Prupe.1G057100_v2.0.a1

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000577
Physical Location & Seq
Forward (+)
4071358 .. 4072113
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G057100.1

Sequence Viewer

Length: 309 bp
ATGGCTTTATTCAGTAGAAATGTATTGCTGCTAATGGTAGTTTTTTTCATGATTACAAGGTGCCAGGCAATATTTCGTCACCATACACAAACTATTAGAAGTACTAATGATGTGGGTGCAGAGATGACTGTTCATTGTAAATCCAAGGACGACGATCTCGGTTCTCATTTGATCTCCGTTAAAAGGTTCGAATGGGGGTCGGAATCTCACTATTTCGACATATACATATCGTATAGAGACCACCCACCGTGCAATGTGTGCCTGTGGAGCATAAGACCAAAGGGGCCATGCATGTGGAACTATGAAACC
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

103

Amino Acids

12.13

Weight (kDa)

7.7

Isoelectric Point (pI)

31.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 60
AfaI GTAC 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 183
AjnI CCWGG 1 cut(s) 63
Alw26I GTCTC 1 cut(s) 231
AoxI GGCC 1 cut(s) 284
ApeKI GCWGC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 71
AsuII TTCGAA 1 cut(s) 189
BanI GGYRCC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 15
BciT130I CCWGG 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 231
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
BmcAI AGTACT 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 62, 285
BmrFI CCNGG 1 cut(s) 65
Bpu14I TTCGAA 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 183
BseMI GCAATG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 138
BshFI GGCC 1 cut(s) 286
BshNI GGYRCC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 231
BsnI GGCC 1 cut(s) 286
Bso31I GGTCTC 1 cut(s) 231
Bsp119I TTCGAA 1 cut(s) 189
Bsp143I GATC 2 cut(s) 154, 171
BspANI GGCC 1 cut(s) 286
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 62, 285
BspT104I TTCGAA 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 60
BspTNI GGTCTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 2 cut(s) 154, 171
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 2 cut(s) 130, 249
BstAPI GCANNNNNTGC 1 cut(s) 258
BstBI TTCGAA 1 cut(s) 189
BstKTI GATC 2 cut(s) 157, 174
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 2 cut(s) 154, 171
BstMWI GCNNNNNNNGC 2 cut(s) 258, 267
BstNI CCWGG 1 cut(s) 65
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 15
BstXI CCANNNNNNTGG 1 cut(s) 294
BsuRI GGCC 1 cut(s) 286
CciI TCATGA 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 102
CviAII CATG 3 cut(s) 49, 288, 292
CviJI RGCY 2 cut(s) 5, 286
CviKI_1 RGCY 2 cut(s) 5, 286
CviQI GTAC 1 cut(s) 102
DpnI GATC 2 cut(s) 156, 173
DpnII GATC 2 cut(s) 154, 171
Eco130I CCWWGG 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 3 cut(s) 52, 291, 295
FatI CATG 3 cut(s) 48, 287, 291
Fnu4HI GCNGC 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 29
GluI GCNGC 1 cut(s) 29
HaeIII GGCC 1 cut(s) 286
Hin1II CATG 3 cut(s) 52, 291, 295
HinfI GANTC 1 cut(s) 203
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 155
HpyCH4III ACNGT 2 cut(s) 130, 249
HpyCH4V TGCA 3 cut(s) 119, 252, 291
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 267
Hsp92II CATG 3 cut(s) 52, 291, 295
Kzo9I GATC 2 cut(s) 154, 171
LmnI GCTCC 1 cut(s) 267
LpnPI CCDG 3 cut(s) 50, 77, 275
Lsp1109I GCAGC 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 156, 173
MboI GATC 2 cut(s) 154, 171
MmeI TCCRAC 1 cut(s) 180
Mph1103I ATGCAT 1 cut(s) 293
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 292
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 258, 267
NdeII GATC 2 cut(s) 154, 171
NlaIII CATG 3 cut(s) 52, 291, 295
NlaIV GGNNCC 2 cut(s) 62, 285
NmuCI GTSAC 1 cut(s) 77
NsiI ATGCAT 1 cut(s) 293
NspI RCATGY 1 cut(s) 295
NspV TTCGAA 1 cut(s) 189
PagI TCATGA 1 cut(s) 48
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 2 cut(s) 62, 285
PspPI GGNCC 1 cut(s) 284
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
RseI CAYNNNNRTG 1 cut(s) 292
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 2 cut(s) 154, 171
Sau96I GGNCC 1 cut(s) 284
ScaI AGTACT 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 65
SetI ASST 2 cut(s) 62, 188
SfuI TTCGAA 1 cut(s) 189
SmiMI CAYNNNNRTG 1 cut(s) 292
SspI AATATT 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 2 cut(s) 130, 249
TaqI TCGA 2 cut(s) 189, 216
TatI WGTACW 1 cut(s) 101
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 37, 122
TspGWI ACGGA 1 cut(s) 166
XceI RCATGY 1 cut(s) 295
ZrmI AGTACT 1 cut(s) 103
Zsp2I ATGCAT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.