MD10G1085700.v1.1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000577
Physical Location & Seq
Reverse (-)
12561469 .. 12561882
414 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1085700.v1.1.491

Sequence Viewer

Length: 414 bp
ATGGCTTTGTTCATCAGAAAGGCAGTGCTATTAACGGTGCTCCTTTTGTTCACACTAACCCTGTGCGATGCACGGAAAAGAAGATATATTAGAGTTAAAAATGAGTTGCAAGCCAACGGAGATTTGTCGCTTACCGTTCACTGCAAATCCAAAAACCATGATATTGGTGTGAAAGTGCTCGCCCCTCATGGCTCCTTTGAATTCAGTTTTAAACCTAACATCTGGGGCACGACACTATACTTCTGCAGTTTTTCTTGGCGGGGTCAATTGAAGTGGTTCGACGTGTATAGAGATAAAAGAGACAAAAATCTTGACAGTAAGGTTCAGTGGAGTATACTTCCTGAAGGCGCATGCAGGACGACATGGGACGAGGAGTCATTTTCTGAATGCATTGAGTGGAATAAGGATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

138

Amino Acids

16.1

Weight (kDa)

9.02

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 30 - 133 1.5e-26 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 334
AciI CCGC 1 cut(s) 259
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 363
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 2 cut(s) 200, 271
AhdI GACNNNNNGTC 1 cut(s) 373
AjiI CACGTC 1 cut(s) 283
Alw21I GWGCWC 2 cut(s) 42, 180
Alw26I GTCTC 1 cut(s) 294
ApoI RAATTY 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 230
Bbv12I GWGCWC 2 cut(s) 42, 180
BcoDI GTCTC 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 244
BmeRI GACNNNNNGTC 1 cut(s) 373
BmgBI CACGTC 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 193
BmsI GCATC 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 386
BseSI GKGCMC 1 cut(s) 230
BsiHKAI GWGCWC 2 cut(s) 42, 180
BslFI GGGAC 1 cut(s) 380
BsmAI GTCTC 1 cut(s) 294
BsmFI GGGAC 1 cut(s) 380
BsmI GAATGC 1 cut(s) 392
Bsp1286I GDGCHC 3 cut(s) 42, 180, 230
BspACI CCGC 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 193
BspMAI CTGCAG 1 cut(s) 248
BssNAI GTATAC 1 cut(s) 335
Bst1107I GTATAC 1 cut(s) 335
Bst4CI ACNGT 3 cut(s) 37, 136, 317
BstC8I GCNNGC 3 cut(s) 111, 180, 352
BstHHI GCGC 1 cut(s) 350
BstMAI GTCTC 1 cut(s) 294
BstNSI RCATGY 1 cut(s) 354
BstSFI CTRYAG 1 cut(s) 244
BstSLI GKGCMC 1 cut(s) 230
BstXI CCANNNNNNTGG 1 cut(s) 164
BstZ17I GTATAC 1 cut(s) 335
BtgZI GCGATG 1 cut(s) 81
BtrI CACGTC 1 cut(s) 283
BtsI GCAGTG 2 cut(s) 30, 139
BtsIMutI CAGTG 3 cut(s) 30, 139, 332
Cac8I GCNNGC 3 cut(s) 111, 180, 352
CfoI GCGC 1 cut(s) 350
CspCI CAANNNNNGTGG 2 cut(s) 254, 289
CviAII CATG 4 cut(s) 158, 188, 351, 363
CviJI RGCY 3 cut(s) 5, 113, 192
CviKI_1 RGCY 3 cut(s) 5, 113, 192
DraI TTTAAA 1 cut(s) 211
DriI GACNNNNNGTC 1 cut(s) 373
Eam1105I GACNNNNNGTC 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 363
EcoRI GAATTC 1 cut(s) 200
EcoT22I ATGCAT 1 cut(s) 392
FaeI CATG 4 cut(s) 161, 191, 354, 366
FaiI YATR 8 cut(s) 87, 159, 189, 238, 288, 335, 352, 364
FaqI GGGAC 1 cut(s) 380
FatI CATG 4 cut(s) 157, 187, 350, 362
FauI CCCGC 1 cut(s) 252
FblI GTMKAC 1 cut(s) 334
GlaI GCGC 1 cut(s) 349
HhaI GCGC 1 cut(s) 350
Hin1II CATG 4 cut(s) 161, 191, 354, 366
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HinfI GANTC 1 cut(s) 374
Hpy166II GTNNAC 3 cut(s) 51, 139, 335
Hpy188I TCNGA 2 cut(s) 17, 385
Hpy188III TCNNGA 2 cut(s) 311, 341
Hpy8I GTNNAC 3 cut(s) 51, 139, 335
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 3 cut(s) 37, 136, 317
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 6 cut(s) 71, 109, 144, 246, 354, 390
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 4 cut(s) 161, 191, 354, 366
HspAI GCGC 1 cut(s) 348
LmnI GCTCC 2 cut(s) 45, 197
LpnPI CCDG 4 cut(s) 74, 208, 340, 354
LweI GCATC 1 cut(s) 58
MaeII ACGT 1 cut(s) 282
MboII GAAGA 1 cut(s) 93
MfeI CAATTG 1 cut(s) 266
MhlI GDGCHC 3 cut(s) 42, 180, 230
MluCI AATT 2 cut(s) 200, 266
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 2 cut(s) 195, 364
Mph1103I ATGCAT 1 cut(s) 392
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 3 cut(s) 32, 96, 210
MunI CAATTG 1 cut(s) 266
Mva1269I GAATGC 1 cut(s) 392
NlaIII CATG 4 cut(s) 161, 191, 354, 366
NlaIV GGNNCC 1 cut(s) 193
NsiI ATGCAT 1 cut(s) 392
NspI RCATGY 1 cut(s) 354
PaeI GCATGC 1 cut(s) 354
PctI GAATGC 1 cut(s) 392
PdmI GAANNNNTTC 1 cut(s) 275
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
PspN4I GGNNCC 1 cut(s) 193
PstI CTGCAG 1 cut(s) 248
SaqAI TTAA 3 cut(s) 32, 96, 210
SchI GAGTC 1 cut(s) 383
SduI GDGCHC 3 cut(s) 42, 180, 230
SetI ASST 3 cut(s) 217, 285, 324
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 244
SphI GCATGC 1 cut(s) 354
Sse9I AATT 2 cut(s) 200, 266
SsiI CCGC 1 cut(s) 259
TaaI ACNGT 3 cut(s) 37, 136, 317
TaiI ACGT 1 cut(s) 285
TaqI TCGA 1 cut(s) 279
TasI AATT 2 cut(s) 200, 266
Tru1I TTAA 3 cut(s) 32, 96, 210
Tru9I TTAA 3 cut(s) 32, 96, 210
TscAI CASTG 3 cut(s) 30, 146, 332
TspGWI ACGGA 2 cut(s) 88, 132
TspRI CASTG 3 cut(s) 30, 146, 332
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 354
XmiI GTMKAC 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 275
Zsp2I ATGCAT 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.