Rmu_sc0002404.1_g000026

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002404.1
OG0000577
Physical Location & Seq
Reverse (-)
154427 .. 159191
4765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002404.1_g000026.1.cds

Sequence Viewer

Length: 687 bp
atgggaaaagaccgtgacatcttggaggtctacagaacagaccgtagtcgctatatcttcgaacaatgcagagatcattgctcttcacgaagtgtcatcagggggaggtgcagacatcagggggagatgtctacatgttcgtctcgaatcgtgaaggtaatgacaatttctggtgaagatattggacgcaagacaaggcatatcaaaatcttaaatgatttggatggaaactttcccctgactgttcattgtaaatctgctgatgatgatattggtgagaaaaccctccgccatggtgctgtatatgaattcaattttcaacctaaggtctttccgaggactacactgttcttttgcagttttcagtggaatagtatacttcaccatttcaatgtgtattatgagggagttgattgcagtgagtgttgtgtagaaagcttatcatggaggcatcttgacaaggctgagaatgtggattctgggcgaggtcttggccgccttcgactaccatggggtggcttagatgttaggctactggatgcatgtcacggttgggtcccacaatggctgggcctccaaggagttcctaactccctagctatagacctctatctggttggaaaattgtttgatgaggagagtctgcgcatgggcagtaggtgttacatggcgaagcctaatctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

228

Amino Acids

26.24

Weight (kDa)

8.0

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 647
AccB7I CCANNNNNTGG 1 cut(s) 515
AccI GTMKAC 3 cut(s) 30, 131, 376
AciI CCGC 2 cut(s) 289, 496
AcoI YGGCCR 1 cut(s) 493
AcsI RAATTY 1 cut(s) 308
AdeI CACNNNGTG 1 cut(s) 92
AfiI CCNNNNNNNGG 2 cut(s) 515, 613
AflIII ACRYGT 1 cut(s) 134
AgsI TTSAA 3 cut(s) 313, 320, 391
AluBI AGCT 2 cut(s) 438, 599
AluI AGCT 2 cut(s) 438, 599
Alw26I GTCTC 1 cut(s) 147
AoxI GGCC 2 cut(s) 493, 571
ApoI RAATTY 1 cut(s) 308
AspLEI GCGC 1 cut(s) 648
AspS9I GGNCC 2 cut(s) 556, 571
AsuHPI GGTGA 3 cut(s) 185, 287, 374
AsuII TTCGAA 1 cut(s) 60
AvaII GGWCC 1 cut(s) 556
AxyI CCTNAGG 1 cut(s) 324
BccI CCATC 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 1 cut(s) 596
BfmI CTRYAG 2 cut(s) 31, 600
BisI GCNGC 1 cut(s) 496
BlsI GCNGC 1 cut(s) 497
Bme18I GGWCC 1 cut(s) 556
BmgT120I GGNCC 2 cut(s) 556, 571
BmiI GGNNCC 2 cut(s) 557, 558
BmsI GCATC 2 cut(s) 460, 529
BoxI GACNNNNGTC 1 cut(s) 45
Bpu14I TTCGAA 1 cut(s) 60
BsaJI CCNNGG 4 cut(s) 292, 335, 509, 577
Bsc4I CCNNNNNNNGG 2 cut(s) 515, 613
Bse1I ACTGG 1 cut(s) 540
Bse21I CCTNAGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 76
BseDI CCNNGG 4 cut(s) 292, 335, 509, 577
BseGI GGATG 2 cut(s) 229, 544
BseLI CCNNNNNNNGG 2 cut(s) 515, 613
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 1 cut(s) 540
BseRI GAGGAG 1 cut(s) 650
BseYI CCCAGC 1 cut(s) 568
BsgI GTGCAG 1 cut(s) 130
BshFI GGCC 2 cut(s) 495, 573
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 2 cut(s) 515, 613
BsmAI GTCTC 1 cut(s) 147
BsmBI CGTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 542
BsnI GGCC 2 cut(s) 495, 573
Bsp119I TTCGAA 1 cut(s) 60
Bsp143I GATC 1 cut(s) 73
Bsp19I CCATGG 2 cut(s) 292, 509
BspACI CCGC 2 cut(s) 289, 496
BspANI GGCC 2 cut(s) 495, 573
BspCNI CTCAG 1 cut(s) 457
BspLI GGNNCC 2 cut(s) 557, 558
BspQI GCTCTTC 1 cut(s) 88
BspT104I TTCGAA 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 76
BsrI ACTGG 1 cut(s) 540
BssECI CCNNGG 4 cut(s) 292, 335, 509, 577
BssMI GATC 1 cut(s) 73
BssNAI GTATAC 1 cut(s) 377
BssT1I CCWWGG 3 cut(s) 292, 509, 577
Bst1107I GTATAC 1 cut(s) 377
Bst4CI ACNGT 5 cut(s) 14, 44, 244, 348, 551
Bst6I CTCTTC 1 cut(s) 88
BstBI TTCGAA 1 cut(s) 60
BstDEI CTNAG 3 cut(s) 324, 465, 520
BstDSI CCRYGG 2 cut(s) 292, 509
BstF5I GGATG 2 cut(s) 229, 544
BstHHI GCGC 1 cut(s) 648
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 73
BstNSI RCATGY 2 cut(s) 138, 546
BstPAI GACNNNNGTC 1 cut(s) 45
BstSFI CTRYAG 2 cut(s) 31, 600
BstZ17I GTATAC 1 cut(s) 377
Bsu36I CCTNAGG 1 cut(s) 324
BsuRI GGCC 2 cut(s) 495, 573
BtgI CCRYGG 2 cut(s) 292, 509
BtsCI GGATG 2 cut(s) 229, 544
BtsI GCAGTG 1 cut(s) 424
BtsIMutI CAGTG 3 cut(s) 344, 371, 424
CfoI GCGC 1 cut(s) 648
Cfr13I GGNCC 2 cut(s) 556, 571
CseI GACGC 1 cut(s) 195
CviAII CATG 7 cut(s) 135, 293, 444, 510, 543, 649, 667
CviJI RGCY 9 cut(s) 438, 464, 495, 519, 532, 568, 573, 599, 676
CviKI_1 RGCY 9 cut(s) 438, 464, 495, 519, 532, 568, 573, 599, 676
DdeI CTNAG 3 cut(s) 324, 465, 520
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
DraIII CACNNNGTG 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 493
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
EciI GGCGGA 1 cut(s) 278
Eco130I CCWWGG 3 cut(s) 292, 509, 577
Eco47I GGWCC 1 cut(s) 556
Eco81I CCTNAGG 1 cut(s) 324
EcoO109I RGGNCCY 1 cut(s) 556
EcoRI GAATTC 1 cut(s) 308
EcoT14I CCWWGG 3 cut(s) 292, 509, 577
EcoT22I ATGCAT 1 cut(s) 544
ErhI CCWWGG 3 cut(s) 292, 509, 577
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 7 cut(s) 138, 296, 447, 513, 546, 652, 670
FaqI GGGAC 1 cut(s) 542
FatI CATG 7 cut(s) 134, 292, 443, 509, 542, 648, 666
FblI GTMKAC 3 cut(s) 30, 131, 376
Fnu4HI GCNGC 1 cut(s) 496
FokI GGATG 2 cut(s) 236, 551
Fsp4HI GCNGC 1 cut(s) 496
FspBI CTAG 1 cut(s) 596
FspI TGCGCA 1 cut(s) 647
GlaI GCGC 1 cut(s) 647
GluI GCNGC 1 cut(s) 496
GsaI CCCAGC 1 cut(s) 572
HaeIII GGCC 2 cut(s) 495, 573
HgaI GACGC 1 cut(s) 195
HhaI GCGC 1 cut(s) 648
Hin1II CATG 7 cut(s) 138, 296, 447, 513, 546, 652, 670
Hin6I GCGC 1 cut(s) 646
HinP1I GCGC 1 cut(s) 646
HindIII AAGCTT 1 cut(s) 436
HinfI GANTC 3 cut(s) 147, 476, 640
HphI GGTGA 3 cut(s) 185, 287, 374
Hpy166II GTNNAC 3 cut(s) 31, 132, 377
Hpy188I TCNGA 1 cut(s) 336
Hpy188III TCNNGA 4 cut(s) 87, 144, 151, 455
Hpy8I GTNNAC 3 cut(s) 31, 132, 377
HpyAV CCTTC 2 cut(s) 148, 509
HpyCH4III ACNGT 5 cut(s) 14, 44, 244, 348, 551
HpyCH4V TGCA 5 cut(s) 69, 111, 357, 417, 542
HpyF3I CTNAG 3 cut(s) 324, 465, 520
Hsp92II CATG 7 cut(s) 138, 296, 447, 513, 546, 652, 670
HspAI GCGC 1 cut(s) 646
KflI GGGWCCC 1 cut(s) 556
Kzo9I GATC 1 cut(s) 73
LguI GCTCTTC 1 cut(s) 88
LpnPI CCDG 8 cut(s) 85, 104, 156, 251, 465, 521, 554, 599
LweI GCATC 2 cut(s) 460, 529
MaeI CTAG 1 cut(s) 596
MaeIII GTNAC 3 cut(s) 14, 545, 662
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 3 cut(s) 49, 75, 188
MluCI AATT 4 cut(s) 165, 308, 313, 623
MlyI GAGTC 1 cut(s) 649
MmeI TCCRAC 1 cut(s) 598
Mph1103I ATGCAT 1 cut(s) 544
MseI TTAA 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 390
NcoI CCATGG 2 cut(s) 292, 509
NdeII GATC 1 cut(s) 73
NlaIII CATG 7 cut(s) 138, 296, 447, 513, 546, 652, 670
NlaIV GGNNCC 2 cut(s) 557, 558
NmuCI GTSAC 2 cut(s) 14, 545
NsbI TGCGCA 1 cut(s) 647
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 2 cut(s) 138, 546
NspV TTCGAA 1 cut(s) 60
PciI ACATGT 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 88
PfeI GAWTC 2 cut(s) 147, 476
PflMI CCANNNNNTGG 1 cut(s) 515
PkrI GCNGC 1 cut(s) 497
PleI GAGTC 1 cut(s) 648
PpsI GAGTC 1 cut(s) 648
PpuMI RGGWCCY 1 cut(s) 556
PscI ACATGT 1 cut(s) 134
PshAI GACNNNNGTC 1 cut(s) 45
Psp5II RGGWCCY 1 cut(s) 556
PspFI CCCAGC 1 cut(s) 568
PspN4I GGNNCC 2 cut(s) 557, 558
PspPI GGNCC 2 cut(s) 556, 571
PspPPI RGGWCCY 1 cut(s) 556
RseI CAYNNNNRTG 1 cut(s) 390
SapI GCTCTTC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 1 cut(s) 496
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 2 cut(s) 556, 571
SchI GAGTC 1 cut(s) 649
SfaNI GCATC 2 cut(s) 460, 529
SfcI CTRYAG 2 cut(s) 31, 600
SfuI TTCGAA 1 cut(s) 60
SinI GGWCC 1 cut(s) 556
SmiMI CAYNNNNRTG 1 cut(s) 390
Sse9I AATT 4 cut(s) 165, 308, 313, 623
SsiI CCGC 2 cut(s) 289, 496
SspMI CTAG 1 cut(s) 596
StyI CCWWGG 3 cut(s) 292, 509, 577
TaaI ACNGT 5 cut(s) 14, 44, 244, 348, 551
TaqI TCGA 3 cut(s) 60, 145, 502
TasI AATT 4 cut(s) 165, 308, 313, 623
TauI GCSGC 1 cut(s) 498
TfiI GAWTC 2 cut(s) 147, 476
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 3 cut(s) 351, 371, 424
TseFI GTSAC 2 cut(s) 14, 545
Tsp45I GTSAC 2 cut(s) 14, 545
TspDTI ATGAA 2 cut(s) 236, 321
TspRI CASTG 3 cut(s) 351, 371, 424
Van91I CCANNNNNTGG 1 cut(s) 515
VpaK11BI GGWCC 1 cut(s) 556
XapI RAATTY 1 cut(s) 308
XceI RCATGY 2 cut(s) 138, 546
XmiI GTMKAC 3 cut(s) 30, 131, 376
XspI CTAG 1 cut(s) 596
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.