Prupe.1G055500_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000577
Physical Location & Seq
Reverse (-)
3923721 .. 3924134
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G055500.1

Sequence Viewer

Length: 414 bp
ATGGCTTGTTTCAATGGAAGTTCGGTGGTGCTACTAATCACCATGACACTTTTCTTGCTCACCATGACCCCCACGTCTGGTGCAGTGAAGACAAGGCAAGTGAGAGTCACAAGTGAGTTAGAGGGAGGCAAGCCCCTCACCGTTCACTGTAAATCCAAGGACGATGATCTCGGCGTCCATGTGCTCCAACCTAAGGGTTCATATGAATTCAGCTTTAAACCTAATATCTTCATCACATCGACATTATTCTTCTGCAGTTTTCAATGGCCAGGTGCATTTCATTGGTTCGATATATATGTTGACGCTAGAGATAACAAAATTTGTAGCAAATGTCATTGGGTTGTATATGAAGATGGGCCATGCATGTATAACTGGAGCGACCAACAGTATAATATATGCCATACCTGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

138

Amino Acids

15.72

Weight (kDa)

6.48

Isoelectric Point (pI)

29.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 266
AcsI RAATTY 2 cut(s) 206, 318
AcyI GRCGYC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 77, 193
AgsI TTSAA 2 cut(s) 13, 263
AjiI CACGTC 1 cut(s) 75
AjnI CCWGG 2 cut(s) 268, 404
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
Alw21I GWGCWC 1 cut(s) 186
AoxI GGCC 2 cut(s) 266, 356
ApoI RAATTY 2 cut(s) 206, 318
AspS9I GGNCC 1 cut(s) 356
AsuHPI GGTGA 3 cut(s) 31, 52, 130
AxyI CCTNAGG 1 cut(s) 192
BalI TGGCCA 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 186
BccI CCATC 1 cut(s) 347
BciT130I CCWGG 2 cut(s) 270, 406
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 253
Bme1390I CCNGG 2 cut(s) 270, 406
BmgBI CACGTC 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 356
BmrFI CCNGG 2 cut(s) 270, 406
BpiI GAAGAC 1 cut(s) 95
BpmI CTGGAG 1 cut(s) 394
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 193
Bse1I ACTGG 1 cut(s) 377
Bse21I CCTNAGG 1 cut(s) 192
BseBI CCWGG 2 cut(s) 270, 406
BseDI CCNNGG 1 cut(s) 156
BseLI CCNNNNNNNGG 2 cut(s) 77, 193
BseNI ACTGG 1 cut(s) 377
BsgI GTGCAG 1 cut(s) 102
BshFI GGCC 2 cut(s) 268, 358
BsiHKAI GWGCWC 1 cut(s) 186
BslI CCNNNNNNNGG 2 cut(s) 77, 193
BsnI GGCC 2 cut(s) 268, 358
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 1 cut(s) 166
BspANI GGCC 2 cut(s) 268, 358
BspMAI CTGCAG 1 cut(s) 257
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 166
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 270, 406
Bst4CI ACNGT 3 cut(s) 142, 149, 387
BstACI GRCGYC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 192
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstNI CCWGG 2 cut(s) 270, 406
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 2 cut(s) 268, 404
BstSFI CTRYAG 1 cut(s) 253
BstV2I GAAGAC 1 cut(s) 95
Bsu36I CCTNAGG 1 cut(s) 192
BsuRI GGCC 2 cut(s) 268, 358
BtrI CACGTC 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 2 cut(s) 90, 145
Cac8I GCNNGC 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 356
CseI GACGC 2 cut(s) 163, 311
CviAII CATG 5 cut(s) 43, 64, 179, 360, 364
CviJI RGCY 5 cut(s) 5, 133, 213, 268, 358
CviKI_1 RGCY 5 cut(s) 5, 133, 213, 268, 358
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
DraI TTTAAA 1 cut(s) 217
DrdI GACNNNNNNGTC 1 cut(s) 73
DseDI GACNNNNNNGTC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 156
Eco81I CCTNAGG 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 206
EcoRII CCWGG 2 cut(s) 268, 404
EcoT14I CCWWGG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 365
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 5 cut(s) 46, 67, 182, 363, 367
FatI CATG 5 cut(s) 42, 63, 178, 359, 363
FauNDI CATATG 1 cut(s) 202
FspBI CTAG 1 cut(s) 306
GsuI CTGGAG 1 cut(s) 394
HaeIII GGCC 2 cut(s) 268, 358
HgaI GACGC 2 cut(s) 163, 311
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 5 cut(s) 46, 67, 182, 363, 367
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 1 cut(s) 105
HphI GGTGA 3 cut(s) 31, 52, 130
Hpy166II GTNNAC 2 cut(s) 145, 301
Hpy8I GTNNAC 2 cut(s) 145, 301
HpyCH4III ACNGT 3 cut(s) 142, 149, 387
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 4 cut(s) 83, 255, 275, 363
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 74
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 5 cut(s) 46, 67, 182, 363, 367
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 2 cut(s) 189, 375
LpnPI CCDG 5 cut(s) 63, 255, 282, 358, 391
MaeI CTAG 1 cut(s) 306
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 106
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 4 cut(s) 100, 220, 241, 362
MhlI GDGCHC 1 cut(s) 186
MlsI TGGCCA 1 cut(s) 268
MluCI AATT 3 cut(s) 206, 318, 409
MluNI TGGCCA 1 cut(s) 268
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 3 cut(s) 115, 119, 146
Mox20I TGGCCA 1 cut(s) 268
Mph1103I ATGCAT 1 cut(s) 365
MscI TGGCCA 1 cut(s) 268
MseI TTAA 2 cut(s) 216, 412
Msp20I TGGCCA 1 cut(s) 268
MspR9I CCNGG 2 cut(s) 270, 406
MvaI CCWGG 2 cut(s) 270, 406
NdeI CATATG 1 cut(s) 202
NdeII GATC 1 cut(s) 166
NlaIII CATG 5 cut(s) 46, 67, 182, 363, 367
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 106
NsiI ATGCAT 1 cut(s) 365
NspI RCATGY 1 cut(s) 367
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp6I CCWGG 2 cut(s) 268, 404
PspGI CCWGG 2 cut(s) 268, 404
PspPI GGNCC 1 cut(s) 356
PstI CTGCAG 1 cut(s) 257
SaqAI TTAA 2 cut(s) 216, 412
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 1 cut(s) 356
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 270, 406
SduI GDGCHC 1 cut(s) 186
SetI ASST 6 cut(s) 77, 193, 215, 223, 274, 407
SfcI CTRYAG 1 cut(s) 253
Sse9I AATT 3 cut(s) 206, 318, 409
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 268, 404
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 3 cut(s) 142, 149, 387
TaiI ACGT 1 cut(s) 77
TaqI TCGA 2 cut(s) 239, 288
TasI AATT 3 cut(s) 206, 318, 409
Tru1I TTAA 2 cut(s) 216, 412
Tru9I TTAA 2 cut(s) 216, 412
TscAI CASTG 2 cut(s) 90, 152
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 5 cut(s) 189, 219, 220, 269, 363
TspRI CASTG 2 cut(s) 90, 152
XapI RAATTY 2 cut(s) 206, 318
XceI RCATGY 1 cut(s) 367
XspI CTAG 1 cut(s) 306
Zsp2I ATGCAT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.