Rorug04G0077200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000591
Physical Location & Seq
Forward (+)
11961102 .. 11961536
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0077200.1

Sequence Viewer

Length: 435 bp
ATGGCGGTGACTGCATTGGGGGGAGGGGGTGCGAGGCAGAAGGCGGTGTCCGGCTGTGTGGTGTCGGTTGGGCTCTCGGATCTTGCAGCAGGGATGGGGGAGGACGACGGTCGGTTCGGGAAGGAAGACAGCGGGTGTCCGATTTCTGGTGCTTCTCGTCATCAGGGATCTGGGCACTCGAGTTTTGGGGGTGTGGTGGTGGAGGATGTCAGTTGCTGGTTCTTTGTCGGCGGTGTTTGTTCGACGGCGGTCGGGGTCCGAGAGCAGCTGCGGAGCGACGGTCTGGGAGCTAGGAAGGCAGCGGTGGTGCTTCCTGTGCAGCAACGTGTTTGGGCTGGATCCACTATCTGGGCCCTCGTTGACCTACTTCGGTTGTGGGCCTGCCTTAGGCCGAGTGGTTGTTTTTGGGCAGAAGCAGTCGTGGGCTGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

144

Amino Acids

14.81

Weight (kDa)

6.09

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 348
AciI CCGC 7 cut(s) 5, 44, 132, 231, 248, 271, 302
AclWI GGATC 4 cut(s) 87, 175, 333, 346
AfiI CCNNNNNNNGG 3 cut(s) 146, 348, 387
AflIII ACRYGT 1 cut(s) 325
AluBI AGCT 2 cut(s) 268, 290
AluI AGCT 2 cut(s) 268, 290
AlwI GGATC 4 cut(s) 87, 175, 333, 346
AlwNI CAGNNNCTG 1 cut(s) 216
Ama87I CYCGRG 1 cut(s) 178
AoxI GGCC 3 cut(s) 351, 378, 389
ApaI GGGCCC 1 cut(s) 355
ApeKI GCWGC 5 cut(s) 86, 265, 268, 299, 319
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AspS9I GGNCC 4 cut(s) 256, 351, 352, 378
AsuHPI GGTGA 1 cut(s) 19
AvaI CYCGRG 1 cut(s) 178
AvaII GGWCC 1 cut(s) 256
AxyI CCTNAGG 1 cut(s) 386
BaeGI GKGCMC 2 cut(s) 177, 355
BamHI GGATCC 1 cut(s) 338
BanII GRGCYC 2 cut(s) 75, 355
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 5 cut(s) 98, 255, 277, 311, 331
BccI CCATC 1 cut(s) 88
BceAI ACGGC 1 cut(s) 261
BfaI CTAG 1 cut(s) 291
BisI GCNGC 5 cut(s) 87, 266, 269, 300, 320
BlsI GCNGC 5 cut(s) 88, 267, 270, 301, 321
Bme18I GGWCC 1 cut(s) 256
BmeT110I CYCGRG 1 cut(s) 178
BmgT120I GGNCC 4 cut(s) 256, 351, 352, 378
BmiI GGNNCC 3 cut(s) 257, 340, 353
BoxI GACNNNNGTC 2 cut(s) 108, 248
BpiI GAAGAC 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 265, 295
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 348, 387
Bse21I CCTNAGG 1 cut(s) 386
BseGI GGATG 2 cut(s) 99, 211
BseLI CCNNNNNNNGG 3 cut(s) 146, 348, 387
BseSI GKGCMC 2 cut(s) 177, 355
BseXI GCAGC 5 cut(s) 98, 255, 277, 311, 331
BseYI CCCAGC 1 cut(s) 426
BsgI GTGCAG 1 cut(s) 338
Bsh1285I CGRYCG 2 cut(s) 112, 252
BshFI GGCC 3 cut(s) 353, 380, 391
BsiEI CGRYCG 2 cut(s) 112, 252
BsiHKCI CYCGRG 1 cut(s) 178
BsiSI CCGG 1 cut(s) 51
BslI CCNNNNNNNGG 3 cut(s) 146, 348, 387
BsnI GGCC 3 cut(s) 353, 380, 391
BsoBI CYCGRG 1 cut(s) 178
Bsp120I GGGCCC 1 cut(s) 351
Bsp1286I GDGCHC 3 cut(s) 75, 177, 355
Bsp143I GATC 3 cut(s) 79, 167, 338
BspACI CCGC 7 cut(s) 5, 44, 132, 231, 248, 271, 302
BspANI GGCC 3 cut(s) 353, 380, 391
BspLI GGNNCC 3 cut(s) 257, 340, 353
BspPI GGATC 4 cut(s) 87, 175, 333, 346
BssMI GATC 3 cut(s) 79, 167, 338
Bst4CI ACNGT 2 cut(s) 110, 281
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 1 cut(s) 386
BstENI CCTNNNNNAGG 1 cut(s) 385
BstF5I GGATG 2 cut(s) 99, 211
BstKTI GATC 3 cut(s) 82, 170, 341
BstMBI GATC 3 cut(s) 79, 167, 338
BstMCI CGRYCG 2 cut(s) 112, 252
BstMWI GCNNNNNNNGC 3 cut(s) 11, 296, 316
BstPAI GACNNNNGTC 2 cut(s) 108, 248
BstSLI GKGCMC 2 cut(s) 177, 355
BstV1I GCAGC 5 cut(s) 98, 255, 277, 311, 331
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 3 cut(s) 79, 167, 338
BstYI RGATCY 3 cut(s) 79, 167, 338
Bsu36I CCTNAGG 1 cut(s) 386
BsuRI GGCC 3 cut(s) 353, 380, 391
BtsCI GGATG 2 cut(s) 99, 211
Cac8I GCNNGC 1 cut(s) 382
CaiI CAGNNNCTG 1 cut(s) 216
Cfr13I GGNCC 4 cut(s) 256, 351, 352, 378
CviJI RGCY 9 cut(s) 54, 73, 268, 290, 335, 353, 380, 391, 426
CviKI_1 RGCY 9 cut(s) 54, 73, 268, 290, 335, 353, 380, 391, 426
DdeI CTNAG 1 cut(s) 386
DpnI GATC 3 cut(s) 81, 169, 340
DpnII GATC 3 cut(s) 79, 167, 338
Eco24I GRGCYC 2 cut(s) 75, 355
Eco47I GGWCC 1 cut(s) 256
Eco81I CCTNAGG 1 cut(s) 386
Eco88I CYCGRG 1 cut(s) 178
EcoNI CCTNNNNNAGG 1 cut(s) 385
EcoO109I RGGNCCY 1 cut(s) 352
EcoT38I GRGCYC 2 cut(s) 75, 355
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 5 cut(s) 87, 266, 269, 300, 320
FokI GGATG 2 cut(s) 106, 218
FriOI GRGCYC 2 cut(s) 75, 355
Fsp4HI GCNGC 5 cut(s) 87, 266, 269, 300, 320
FspBI CTAG 1 cut(s) 291
GluI GCNGC 5 cut(s) 87, 266, 269, 300, 320
GsaI CCCAGC 1 cut(s) 430
HaeIII GGCC 3 cut(s) 353, 380, 391
HapII CCGG 1 cut(s) 51
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HpaII CCGG 1 cut(s) 51
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 3 cut(s) 79, 141, 260
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 3 cut(s) 110, 247, 281
HpyAV CCTTC 3 cut(s) 34, 115, 289
HpyCH4III ACNGT 2 cut(s) 110, 281
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 3 cut(s) 14, 86, 319
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 296, 316
HpyF3I CTNAG 1 cut(s) 386
HpySE526I ACGT 1 cut(s) 325
Kzo9I GATC 3 cut(s) 79, 167, 338
LmnI GCTCC 2 cut(s) 273, 287
Lsp1109I GCAGC 5 cut(s) 98, 255, 277, 311, 331
MaeI CTAG 1 cut(s) 291
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 7
MalI GATC 3 cut(s) 81, 169, 340
MboI GATC 3 cut(s) 79, 167, 338
MboII GAAGA 1 cut(s) 137
MflI RGATCY 3 cut(s) 79, 167, 338
MhlI GDGCHC 3 cut(s) 75, 177, 355
MnlI CCTC 5 cut(s) 17, 27, 94, 196, 365
MspA1I CMGCKG 3 cut(s) 132, 268, 302
MspI CCGG 1 cut(s) 51
MwoI GCNNNNNNNGC 3 cut(s) 11, 296, 316
NdeII GATC 3 cut(s) 79, 167, 338
NlaIV GGNNCC 3 cut(s) 257, 340, 353
NmeAIII GCCGAG 1 cut(s) 417
NmuCI GTSAC 1 cut(s) 7
PaeR7I CTCGAG 1 cut(s) 178
PflMI CCANNNNNTGG 1 cut(s) 348
PkrI GCNGC 5 cut(s) 88, 267, 270, 301, 321
PshAI GACNNNNGTC 2 cut(s) 108, 248
PspFI CCCAGC 1 cut(s) 426
PspN4I GGNNCC 3 cut(s) 257, 340, 353
PspOMI GGGCCC 1 cut(s) 351
PspPI GGNCC 4 cut(s) 256, 351, 352, 378
PspXI VCTCGAGB 1 cut(s) 178
PstNI CAGNNNCTG 1 cut(s) 216
PsuI RGATCY 3 cut(s) 79, 167, 338
PvuII CAGCTG 1 cut(s) 268
SatI GCNGC 5 cut(s) 87, 266, 269, 300, 320
Sau3AI GATC 3 cut(s) 79, 167, 338
Sau96I GGNCC 4 cut(s) 256, 351, 352, 378
SduI GDGCHC 3 cut(s) 75, 177, 355
SetI ASST 4 cut(s) 270, 292, 328, 366
Sfr274I CTCGAG 1 cut(s) 178
SinI GGWCC 1 cut(s) 256
SlaI CTCGAG 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
SsiI CCGC 7 cut(s) 5, 44, 132, 231, 248, 271, 302
SspMI CTAG 1 cut(s) 291
TaaI ACNGT 2 cut(s) 110, 281
TaiI ACGT 1 cut(s) 328
TaqI TCGA 2 cut(s) 179, 242
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 5 cut(s) 86, 265, 268, 299, 319
Tsp45I GTSAC 1 cut(s) 7
Van91I CCANNNNNTGG 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 256
XagI CCTNNNNNAGG 1 cut(s) 385
XhoI CTCGAG 1 cut(s) 178
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.