Rh2CG195700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000591
Physical Location & Seq
Forward (+)
18664054 .. 18664440
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG195700.1

Sequence Viewer

Length: 387 bp
ATGGCTATGGGGATCAAGTGGGTTAAAAAGGATTGGTTGGACGTACAGAGGCTCAGTCGTCGGAACAATCTGGTATCGTCATCATCGTCGTCATTTTCCACCGGTGATAGAAGGTGGAGGAGGGTCGCAAGGACCAGATCATGCGCTCGAGGTGGGATTGATGGTGGTGGGTGGTCTGGTTTGGGGTTGCAGGTGCGGGACTTGGGTTTAACCCAGAGCTTTTCCGGCTTGTTTGGTGGCGGTGTGCTTGTGGTTGTTGGGGGCAACAAGGTGTCGTTGTTTTGGCTCTTGCACGCCTGGGTTGATGCGACAACAGCAATGGAGGGACGATGGAGGCGCTGCCGGGTTGATGTCGCGACGGAGGCGGTCTTGCAGGGTATGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.09

Weight (kDa)

11.24

Isoelectric Point (pI)

63.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 181
Acc36I ACCTGC 1 cut(s) 181
AccII CGCG 1 cut(s) 356
AciI CCGC 3 cut(s) 196, 240, 365
AclWI GGATC 1 cut(s) 20
AfaI GTAC 1 cut(s) 45
AgeI ACCGGT 1 cut(s) 101
AjnI CCWGG 1 cut(s) 296
AluBI AGCT 1 cut(s) 219
AluI AGCT 1 cut(s) 219
AlwI GGATC 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 339
AsiGI ACCGGT 1 cut(s) 101
AspLEI GCGC 2 cut(s) 146, 339
AspS9I GGNCC 1 cut(s) 132
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 326
BccI CCATC 2 cut(s) 155, 324
BciT130I CCWGG 1 cut(s) 298
BcnI CCSGG 1 cut(s) 344
BfoI RGCGCY 1 cut(s) 340
BfuAI ACCTGC 1 cut(s) 181
BisI GCNGC 1 cut(s) 340
BlsI GCNGC 1 cut(s) 341
Bme1390I CCNGG 2 cut(s) 298, 344
Bme18I GGWCC 1 cut(s) 132
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 132
BmrFI CCNGG 2 cut(s) 298, 344
BmsI GCATC 1 cut(s) 295
BpuMI CCSGG 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 101
Bse118I RCCGGY 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 324
BseBI CCWGG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 297
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 67
BseRI GAGGAG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 326
Bsh1236I CGCG 1 cut(s) 356
BshTI ACCGGT 1 cut(s) 101
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 3 cut(s) 102, 225, 343
BslFI GGGAC 2 cut(s) 212, 339
BsmFI GGGAC 2 cut(s) 212, 339
BsoBI CYCGRG 1 cut(s) 147
Bsp143I GATC 2 cut(s) 12, 137
Bsp68I TCGCGA 1 cut(s) 356
BspACI CCGC 3 cut(s) 196, 240, 365
BspCNI CTCAG 1 cut(s) 66
BspFNI CGCG 1 cut(s) 356
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 324
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 2 cut(s) 12, 137
Bst2UI CCWGG 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 53
BstFNI CGCG 1 cut(s) 356
BstH2I RGCGCY 1 cut(s) 340
BstHHI GCGC 2 cut(s) 146, 339
BstKTI GATC 2 cut(s) 15, 140
BstMBI GATC 2 cut(s) 12, 137
BstMWI GCNNNNNNNGC 3 cut(s) 225, 314, 362
BstNI CCWGG 1 cut(s) 298
BstSCI CCNGG 2 cut(s) 296, 342
BstUI CGCG 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 326
BtuMI TCGCGA 1 cut(s) 356
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 294
CfoI GCGC 2 cut(s) 146, 339
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 44
CspAI ACCGGT 1 cut(s) 101
CviAII CATG 1 cut(s) 141
CviJI RGCY 5 cut(s) 5, 52, 219, 228, 286
CviKI_1 RGCY 5 cut(s) 5, 52, 219, 228, 286
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 1 cut(s) 53
DpnI GATC 2 cut(s) 14, 139
DpnII GATC 2 cut(s) 12, 137
Eco47I GGWCC 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 296
FaeI CATG 1 cut(s) 144
FaiI YATR 3 cut(s) 8, 142, 380
FaqI GGGAC 2 cut(s) 212, 339
FatI CATG 1 cut(s) 140
FauI CCCGC 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 340
Fsp4HI GCNGC 1 cut(s) 340
GlaI GCGC 2 cut(s) 145, 338
GluI GCNGC 1 cut(s) 340
HaeII RGCGCY 1 cut(s) 340
HapII CCGG 3 cut(s) 102, 225, 343
HhaI GCGC 2 cut(s) 146, 339
Hin1II CATG 1 cut(s) 144
Hin6I GCGC 2 cut(s) 144, 337
HinP1I GCGC 2 cut(s) 144, 337
HpaII CCGG 3 cut(s) 102, 225, 343
HphI GGTGA 1 cut(s) 116
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 355
Hpy99I CGWCG 3 cut(s) 63, 91, 361
HpyAV CCTTC 1 cut(s) 105
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 3 cut(s) 190, 292, 373
HpyF10VI GCNNNNNNNGC 3 cut(s) 225, 314, 362
HpyF3I CTNAG 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 1 cut(s) 144
HspAI GCGC 2 cut(s) 144, 337
Kzo9I GATC 2 cut(s) 12, 137
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 1 cut(s) 295
MaeII ACGT 1 cut(s) 42
MalI GATC 2 cut(s) 14, 139
MboI GATC 2 cut(s) 12, 137
MmeI TCCRAC 2 cut(s) 18, 41
MnlI CCTC 7 cut(s) 42, 111, 114, 143, 316, 327, 355
MseI TTAA 2 cut(s) 24, 209
MspI CCGG 3 cut(s) 102, 225, 343
MspR9I CCNGG 2 cut(s) 298, 344
MvaI CCWGG 1 cut(s) 298
MvnI CGCG 1 cut(s) 356
MwoI GCNNNNNNNGC 3 cut(s) 225, 314, 362
NciI CCSGG 1 cut(s) 344
NdeII GATC 2 cut(s) 12, 137
NlaIII CATG 1 cut(s) 144
NruI TCGCGA 1 cut(s) 356
PaeR7I CTCGAG 1 cut(s) 147
PaqCI CACCTGC 1 cut(s) 181
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 296
PspGI CCWGG 1 cut(s) 296
PspPI GGNCC 1 cut(s) 132
PspXI VCTCGAGB 1 cut(s) 147
RruI TCGCGA 1 cut(s) 356
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SaqAI TTAA 2 cut(s) 24, 209
SatI GCNGC 1 cut(s) 340
Sau3AI GATC 2 cut(s) 12, 137
Sau96I GGNCC 1 cut(s) 132
ScrFI CCNGG 2 cut(s) 298, 344
SetI ASST 6 cut(s) 45, 116, 154, 195, 221, 273
SfaNI GCATC 1 cut(s) 295
Sfr274I CTCGAG 1 cut(s) 147
SgrAI CRCCGGYG 1 cut(s) 101
SinI GGWCC 1 cut(s) 132
SlaI CTCGAG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
SsiI CCGC 3 cut(s) 196, 240, 365
StyD4I CCNGG 2 cut(s) 296, 342
TaiI ACGT 1 cut(s) 45
TaqI TCGA 1 cut(s) 148
Tru1I TTAA 2 cut(s) 24, 209
Tru9I TTAA 2 cut(s) 24, 209
TseI GCWGC 1 cut(s) 339
TspGWI ACGGA 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 132
XhoI CTCGAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.