Rmu_sc0018325.1_g000009

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018325.1
OG0000591
Physical Location & Seq
Forward (+)
39449 .. 40981
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018325.1_g000009.1.cds

Sequence Viewer

Length: 1113 bp
atggcccaggtccttggggttcaagtggttgacaagcatgataagtatttcggaattcagacctttgttggcagatccaaatatgatacctttgcttacattaaagataacttgtgtaaaaaattaacaggtcagagatctaaattgctcagtgctgcaggtagagaaattttgattaaagtggtagcgcaggcactaccgttgtatactatgaattgcatctacttcctcagaatttcattcaggaactccatcaactgtgtgcccagttctggtggggtagcacagatgagaagaaggctatgcattggcgtgattgggatgaactctgtaaacccaaaagcatgggagaagattctttctattccccttagtcctcggaatcatgctgataggtggatttggggtggtgataagagaggtcaattcacggttatatcagcctaccatgtagctcggagtcggattctcactgattatccttccccactgaaccctagtgcttctctttggcgtcgtctgtggaatgctccagttccaggtagcatcaagatttgtgcatggaaagcatcctctaatgttcttcctactcggagtaggcttaatgaatgtggtattgatttggatacccaatgttcactctgtgatgaagaagtcgagactcctattcatgcagttcgtgattgttcctatgcgactagcttgattcagggggccaacctccctttagttttgaaccccacaaatgttgcaaactggctttcgtctgtccctctgaaaaatttggcttctaccctaatgatcctctcggcaacttggagaaataggaattcaaaagtttgggagggttggctagaaaagcataaagcagctcacattactcccaagttaggtttggctgctaggacgcctccaaagtggaagaaaccccctgttggttttatcaaattgaatgctgaagcagcctttgatcaaacttcgcatcgggcggggttaggtggagtattcagagatcatattggggcctttcttcatgggtggtttcgacatactatcatagcttctcattctactagacatgaggaacttttagcattggtcttgggagtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

370

Amino Acids

41.24

Weight (kDa)

9.93

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 206
AciI CCGC 1 cut(s) 989
AclWI GGATC 2 cut(s) 69, 796
AcsI RAATTY 5 cut(s) 54, 168, 234, 781, 829
AcuI CTGAAG 1 cut(s) 978
AcyI GRCGYC 2 cut(s) 514, 908
AdeI CACNNNGTG 1 cut(s) 644
AfiI CCNNNNNNNGG 4 cut(s) 272, 539, 890, 935
AgsI TTSAA 4 cut(s) 23, 736, 834, 952
AjnI CCWGG 2 cut(s) 6, 538
AluBI AGCT 4 cut(s) 455, 702, 872, 1061
AluI AGCT 4 cut(s) 455, 702, 872, 1061
Alw26I GTCTC 1 cut(s) 653
AlwI GGATC 2 cut(s) 69, 796
AoxI GGCC 3 cut(s) 3, 714, 1023
ApeKI GCWGC 4 cut(s) 155, 869, 899, 962
ApoI RAATTY 5 cut(s) 54, 168, 234, 781, 829
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 4 cut(s) 4, 10, 714, 1023
AsuHPI GGTGA 1 cut(s) 422
AvaII GGWCC 1 cut(s) 10
BaeGI GKGCMC 1 cut(s) 267
BbvI GCAGC 4 cut(s) 142, 881, 886, 974
BccI CCATC 1 cut(s) 260
BciT130I CCWGG 2 cut(s) 8, 540
BciVI GTATCC 1 cut(s) 619
BclI TGATCA 1 cut(s) 970
BcoDI GTCTC 1 cut(s) 653
BfaI CTAG 5 cut(s) 498, 699, 854, 903, 1074
BfmI CTRYAG 1 cut(s) 156
BfuAI ACCTGC 1 cut(s) 149
BfuI GTATCC 1 cut(s) 619
BglII AGATCT 1 cut(s) 137
BisI GCNGC 4 cut(s) 156, 870, 900, 963
BlsI GCNGC 4 cut(s) 157, 871, 901, 964
Bme1390I CCNGG 2 cut(s) 8, 540
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 4 cut(s) 4, 10, 714, 1023
BmiI GGNNCC 2 cut(s) 715, 1024
BmrFI CCNGG 2 cut(s) 8, 540
BmrI ACTGGG 1 cut(s) 261
BmsI GCATC 4 cut(s) 228, 555, 578, 991
BmuI ACTGGG 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 516
BsaHI GRCGYC 2 cut(s) 514, 908
BsaJI CCNNGG 3 cut(s) 6, 13, 377
Bsc4I CCNNNNNNNGG 4 cut(s) 272, 539, 890, 935
Bse1I ACTGG 3 cut(s) 267, 533, 761
BseBI CCWGG 2 cut(s) 8, 540
BseDI CCNNGG 3 cut(s) 6, 13, 377
BseGI GGATG 2 cut(s) 327, 569
BseLI CCNNNNNNNGG 4 cut(s) 272, 539, 890, 935
BseMII CTCAG 2 cut(s) 163, 244
BseNI ACTGG 3 cut(s) 267, 533, 761
BseSI GKGCMC 1 cut(s) 267
BseXI GCAGC 4 cut(s) 142, 881, 886, 974
BshFI GGCC 3 cut(s) 5, 716, 1025
BslFI GGGAC 1 cut(s) 755
BslI CCNNNNNNNGG 4 cut(s) 272, 539, 890, 935
BsmAI GTCTC 1 cut(s) 653
BsmFI GGGAC 1 cut(s) 755
BsmI GAATGC 2 cut(s) 532, 958
BsnI GGCC 3 cut(s) 5, 716, 1025
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 5 cut(s) 74, 137, 801, 970, 1012
BspACI CCGC 1 cut(s) 989
BspANI GGCC 3 cut(s) 5, 716, 1025
BspCNI CTCAG 2 cut(s) 162, 243
BspLI GGNNCC 2 cut(s) 715, 1024
BspMAI CTGCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 149
BspPI GGATC 2 cut(s) 69, 796
BsrI ACTGG 3 cut(s) 267, 533, 761
BssECI CCNNGG 3 cut(s) 6, 13, 377
BssMI GATC 5 cut(s) 74, 137, 801, 970, 1012
BssNAI GTATAC 1 cut(s) 207
BssNI GRCGYC 2 cut(s) 514, 908
BssT1I CCWWGG 1 cut(s) 13
Bst1107I GTATAC 1 cut(s) 207
Bst2UI CCWGG 2 cut(s) 8, 540
Bst4CI ACNGT 3 cut(s) 201, 260, 433
BstACI GRCGYC 2 cut(s) 514, 908
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 3 cut(s) 149, 230, 371
BstF5I GGATG 2 cut(s) 327, 569
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 5 cut(s) 77, 140, 804, 973, 1015
BstMAI GTCTC 1 cut(s) 653
BstMBI GATC 5 cut(s) 74, 137, 801, 970, 1012
BstMWI GCNNNNNNNGC 3 cut(s) 566, 859, 962
BstNI CCWGG 2 cut(s) 8, 540
BstSCI CCNGG 2 cut(s) 6, 538
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 267
BstV1I GCAGC 4 cut(s) 142, 881, 886, 974
BstX2I RGATCY 2 cut(s) 74, 137
BstXI CCANNNNNNTGG 2 cut(s) 14, 345
BstYI RGATCY 2 cut(s) 74, 137
BstZ17I GTATAC 1 cut(s) 207
BsuI GTATCC 1 cut(s) 619
BsuRI GGCC 3 cut(s) 5, 716, 1025
BtsCI GGATG 2 cut(s) 327, 569
BtsIMutI CAGTG 3 cut(s) 157, 471, 488
BveI ACCTGC 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 192
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 4 cut(s) 4, 10, 714, 1023
CseI GACGC 2 cut(s) 503, 916
CspCI CAANNNNNGTGG 2 cut(s) 730, 765
CviAII CATG 8 cut(s) 38, 345, 386, 449, 561, 671, 1034, 1079
DdeI CTNAG 3 cut(s) 149, 230, 371
DpnI GATC 5 cut(s) 76, 139, 803, 972, 1014
DpnII GATC 5 cut(s) 74, 137, 801, 970, 1012
DraIII CACNNNGTG 1 cut(s) 644
Eco130I CCWWGG 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 978
EcoO109I RGGNCCY 2 cut(s) 10, 1023
EcoRI GAATTC 2 cut(s) 54, 829
EcoRII CCWGG 2 cut(s) 6, 538
EcoT14I CCWWGG 1 cut(s) 13
EcoT22I ATGCAT 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 8 cut(s) 41, 348, 389, 452, 564, 674, 1037, 1082
FaqI GGGAC 1 cut(s) 755
FatI CATG 8 cut(s) 37, 344, 385, 448, 560, 670, 1033, 1078
FauI CCCGC 1 cut(s) 982
FbaI TGATCA 1 cut(s) 970
FblI GTMKAC 1 cut(s) 206
Fnu4HI GCNGC 4 cut(s) 156, 870, 900, 963
FokI GGATG 2 cut(s) 334, 556
Fsp4HI GCNGC 4 cut(s) 156, 870, 900, 963
FspBI CTAG 5 cut(s) 498, 699, 854, 903, 1074
GlaI GCGC 1 cut(s) 189
GluI GCNGC 4 cut(s) 156, 870, 900, 963
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 3 cut(s) 5, 716, 1025
HgaI GACGC 2 cut(s) 503, 916
HhaI GCGC 1 cut(s) 190
Hin1I GRCGYC 2 cut(s) 514, 908
Hin1II CATG 8 cut(s) 41, 348, 389, 452, 564, 674, 1037, 1082
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 6 cut(s) 355, 382, 460, 466, 661, 706
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 4 cut(s) 31, 207, 334, 638
Hpy188III TCNNGA 4 cut(s) 244, 550, 658, 680
Hpy8I GTNNAC 4 cut(s) 31, 207, 334, 638
Hpy99I CGWCG 1 cut(s) 519
HpyAV CCTTC 2 cut(s) 291, 492
HpyCH4III ACNGT 3 cut(s) 201, 260, 433
HpyCH4V TGCA 6 cut(s) 158, 219, 306, 560, 674, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 566, 859, 962
HpyF3I CTNAG 3 cut(s) 149, 230, 371
Hsp92I GRCGYC 2 cut(s) 514, 908
Hsp92II CATG 8 cut(s) 41, 348, 389, 452, 564, 674, 1037, 1082
HspAI GCGC 1 cut(s) 188
Ksp22I TGATCA 1 cut(s) 970
Kzo9I GATC 5 cut(s) 74, 137, 801, 970, 1012
LmnI GCTCC 1 cut(s) 535
Lsp1109I GCAGC 4 cut(s) 142, 881, 886, 974
LweI GCATC 4 cut(s) 228, 555, 578, 991
MaeI CTAG 5 cut(s) 498, 699, 854, 903, 1074
MalI GATC 5 cut(s) 76, 139, 803, 972, 1014
MboI GATC 5 cut(s) 74, 137, 801, 970, 1012
MboII GAAGA 6 cut(s) 306, 364, 575, 662, 934, 1022
MflI RGATCY 2 cut(s) 74, 137
MhlI GDGCHC 1 cut(s) 267
MlyI GAGTC 2 cut(s) 469, 655
MmeI TCCRAC 1 cut(s) 443
Mph1103I ATGCAT 1 cut(s) 308
MseI TTAA 4 cut(s) 102, 125, 177, 603
MslI CAYNNNNRTG 1 cut(s) 311
MspR9I CCNGG 2 cut(s) 8, 540
Mva1269I GAATGC 2 cut(s) 532, 958
MvaI CCWGG 2 cut(s) 8, 540
MwoI GCNNNNNNNGC 3 cut(s) 566, 859, 962
NdeII GATC 5 cut(s) 74, 137, 801, 970, 1012
NlaIII CATG 8 cut(s) 41, 348, 389, 452, 564, 674, 1037, 1082
NlaIV GGNNCC 2 cut(s) 715, 1024
NmeAIII GCCGAG 1 cut(s) 788
NsiI ATGCAT 1 cut(s) 308
PctI GAATGC 2 cut(s) 532, 958
PfeI GAWTC 4 cut(s) 355, 382, 466, 706
PkrI GCNGC 4 cut(s) 157, 871, 901, 964
PleI GAGTC 2 cut(s) 468, 655
PpsI GAGTC 2 cut(s) 468, 655
PpuMI RGGWCCY 1 cut(s) 10
Psp5II RGGWCCY 1 cut(s) 10
Psp6I CCWGG 2 cut(s) 6, 538
PspGI CCWGG 2 cut(s) 6, 538
PspN4I GGNNCC 2 cut(s) 715, 1024
PspPI GGNCC 4 cut(s) 4, 10, 714, 1023
PspPPI RGGWCCY 1 cut(s) 10
PstI CTGCAG 1 cut(s) 160
PsuI RGATCY 2 cut(s) 74, 137
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 4 cut(s) 102, 125, 177, 603
SatI GCNGC 4 cut(s) 156, 870, 900, 963
Sau3AI GATC 5 cut(s) 74, 137, 801, 970, 1012
Sau96I GGNCC 4 cut(s) 4, 10, 714, 1023
SchI GAGTC 2 cut(s) 469, 655
ScrFI CCNGG 2 cut(s) 8, 540
SduI GDGCHC 1 cut(s) 267
SfaNI GCATC 4 cut(s) 228, 555, 578, 991
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 10
SmiMI CAYNNNNRTG 1 cut(s) 311
SsiI CCGC 1 cut(s) 989
SspMI CTAG 5 cut(s) 498, 699, 854, 903, 1074
StyD4I CCNGG 2 cut(s) 6, 538
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 3 cut(s) 201, 260, 433
TaqI TCGA 2 cut(s) 657, 1045
TfiI GAWTC 4 cut(s) 355, 382, 466, 706
Tru1I TTAA 4 cut(s) 102, 125, 177, 603
Tru9I TTAA 4 cut(s) 102, 125, 177, 603
TscAI CASTG 3 cut(s) 157, 478, 495
TseI GCWGC 4 cut(s) 155, 869, 899, 962
TspDTI ATGAA 7 cut(s) 227, 228, 338, 621, 659, 663, 1022
TspRI CASTG 3 cut(s) 157, 478, 495
VpaK11BI GGWCC 1 cut(s) 10
XapI RAATTY 5 cut(s) 54, 168, 234, 781, 829
XcmI CCANNNNNNNNNTGG 1 cut(s) 892
XmiI GTMKAC 1 cut(s) 206
XspI CTAG 5 cut(s) 498, 699, 854, 903, 1074
Zsp2I ATGCAT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.