Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NUDIX | PF00293 | 7 - 97 | 1.4e-12 | NUDIX domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 242 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 44, 334 |
| AgsI | TTSAA | 3 cut(s) | 98, 178, 284 |
| AjnI | CCWGG | 3 cut(s) | 22, 165, 327 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 253, 285 |
| AluBI | AGCT | 5 cut(s) | 77, 92, 104, 200, 232 |
| AluI | AGCT | 5 cut(s) | 77, 92, 104, 200, 232 |
| Alw21I | GWGCWC | 1 cut(s) | 257 |
| AoxI | GGCC | 2 cut(s) | 242, 324 |
| ApeKI | GCWGC | 2 cut(s) | 77, 200 |
| AspS9I | GGNCC | 2 cut(s) | 20, 325 |
| AsuHPI | GGTGA | 1 cut(s) | 155 |
| AvaII | GGWCC | 1 cut(s) | 20 |
| AxyI | CCTNAGG | 1 cut(s) | 39 |
| BalI | TGGCCA | 1 cut(s) | 244 |
| Bbv12I | GWGCWC | 1 cut(s) | 257 |
| BbvI | GCAGC | 2 cut(s) | 64, 187 |
| BceAI | ACGGC | 1 cut(s) | 65 |
| BciT130I | CCWGG | 3 cut(s) | 24, 167, 329 |
| BisI | GCNGC | 2 cut(s) | 78, 201 |
| BlsI | GCNGC | 2 cut(s) | 79, 202 |
| Bme1390I | CCNGG | 3 cut(s) | 24, 167, 329 |
| Bme18I | GGWCC | 1 cut(s) | 20 |
| BmgT120I | GGNCC | 2 cut(s) | 20, 325 |
| BmrFI | CCNGG | 3 cut(s) | 24, 167, 329 |
| BmsI | GCATC | 1 cut(s) | 290 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 145, 177, 326, 358 |
| BpuEI | CTTGAG | 1 cut(s) | 254 |
| BsaJI | CCNNGG | 1 cut(s) | 327 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 221, 251 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 44, 334 |
| Bse118I | RCCGGY | 1 cut(s) | 303 |
| Bse1I | ACTGG | 2 cut(s) | 15, 298 |
| Bse21I | CCTNAGG | 1 cut(s) | 39 |
| BseBI | CCWGG | 3 cut(s) | 24, 167, 329 |
| BseDI | CCNNGG | 1 cut(s) | 327 |
| BseGI | GGATG | 3 cut(s) | 11, 175, 321 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 44, 334 |
| BseNI | ACTGG | 2 cut(s) | 15, 298 |
| BseRI | GAGGAG | 2 cut(s) | 129, 242 |
| BseXI | GCAGC | 2 cut(s) | 64, 187 |
| BseYI | CCCAGC | 2 cut(s) | 48, 104 |
| BsgI | GTGCAG | 1 cut(s) | 89 |
| BshFI | GGCC | 2 cut(s) | 244, 326 |
| BsiHKAI | GWGCWC | 1 cut(s) | 257 |
| BsiSI | CCGG | 1 cut(s) | 304 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 44, 334 |
| BsnI | GGCC | 2 cut(s) | 244, 326 |
| Bsp1286I | GDGCHC | 1 cut(s) | 257 |
| BspANI | GGCC | 2 cut(s) | 244, 326 |
| BsrFI | RCCGGY | 1 cut(s) | 303 |
| BsrI | ACTGG | 2 cut(s) | 15, 298 |
| BssAI | RCCGGY | 1 cut(s) | 303 |
| BssECI | CCNNGG | 1 cut(s) | 327 |
| Bst2UI | CCWGG | 3 cut(s) | 24, 167, 329 |
| Bst4CI | ACNGT | 2 cut(s) | 67, 280 |
| BstC8I | GCNNGC | 3 cut(s) | 305, 309, 354 |
| BstDEI | CTNAG | 1 cut(s) | 39 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 42, 332 |
| BstF5I | GGATG | 3 cut(s) | 11, 175, 321 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 209 |
| BstNI | CCWGG | 3 cut(s) | 24, 167, 329 |
| BstNSI | RCATGY | 2 cut(s) | 311, 356 |
| BstSCI | CCNGG | 3 cut(s) | 22, 165, 327 |
| BstV1I | GCAGC | 2 cut(s) | 64, 187 |
| Bsu36I | CCTNAGG | 1 cut(s) | 39 |
| BsuRI | GGCC | 2 cut(s) | 244, 326 |
| BtsCI | GGATG | 3 cut(s) | 11, 175, 321 |
| BtsIMutI | CAGTG | 1 cut(s) | 22 |
| Cac8I | GCNNGC | 3 cut(s) | 305, 309, 354 |
| Cfr10I | RCCGGY | 1 cut(s) | 303 |
| Cfr13I | GGNCC | 2 cut(s) | 20, 325 |
| CsiI | ACCWGGT | 1 cut(s) | 22 |
| CviAII | CATG | 4 cut(s) | 240, 308, 312, 353 |
| DdeI | CTNAG | 1 cut(s) | 39 |
| EaeI | YGGCCR | 1 cut(s) | 242 |
| Eco47I | GGWCC | 1 cut(s) | 20 |
| Eco81I | CCTNAGG | 1 cut(s) | 39 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 42, 332 |
| EcoO109I | RGGNCCY | 1 cut(s) | 325 |
| EcoRII | CCWGG | 3 cut(s) | 22, 165, 327 |
| EcoT22I | ATGCAT | 1 cut(s) | 313 |
| FaeI | CATG | 4 cut(s) | 243, 311, 315, 356 |
| FaiI | YATR | 7 cut(s) | 191, 193, 206, 241, 309, 313, 354 |
| FatI | CATG | 4 cut(s) | 239, 307, 311, 352 |
| Fnu4HI | GCNGC | 2 cut(s) | 78, 201 |
| FokI | GGATG | 2 cut(s) | 182, 328 |
| Fsp4HI | GCNGC | 2 cut(s) | 78, 201 |
| GluI | GCNGC | 2 cut(s) | 78, 201 |
| GsaI | CCCAGC | 2 cut(s) | 52, 108 |
| HaeIII | GGCC | 2 cut(s) | 244, 326 |
| HapII | CCGG | 1 cut(s) | 304 |
| Hin1II | CATG | 4 cut(s) | 243, 311, 315, 356 |
| HinfI | GANTC | 1 cut(s) | 236 |
| HpaII | CCGG | 1 cut(s) | 304 |
| HphI | GGTGA | 1 cut(s) | 155 |
| Hpy166II | GTNNAC | 1 cut(s) | 20 |
| Hpy188III | TCNNGA | 1 cut(s) | 284 |
| Hpy8I | GTNNAC | 1 cut(s) | 20 |
| HpyAV | CCTTC | 1 cut(s) | 179 |
| HpyCH4III | ACNGT | 2 cut(s) | 67, 280 |
| HpyCH4V | TGCA | 5 cut(s) | 70, 212, 311, 356, 374 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 209 |
| HpyF3I | CTNAG | 1 cut(s) | 39 |
| Hsp92II | CATG | 4 cut(s) | 243, 311, 315, 356 |
| KroI | GCCGGC | 1 cut(s) | 303 |
| KroNI | GCCGGC | 1 cut(s) | 305 |
| LmnI | GCTCC | 1 cut(s) | 229 |
| Lsp1109I | GCAGC | 2 cut(s) | 64, 187 |
| LweI | GCATC | 1 cut(s) | 290 |
| MabI | ACCWGGT | 1 cut(s) | 22 |
| MboII | GAAGA | 1 cut(s) | 110 |
| MhlI | GDGCHC | 1 cut(s) | 257 |
| MlsI | TGGCCA | 1 cut(s) | 244 |
| MluCI | AATT | 1 cut(s) | 146 |
| MluNI | TGGCCA | 1 cut(s) | 244 |
| MlyI | GAGTC | 1 cut(s) | 245 |
| MnlI | CCTC | 6 cut(s) | 38, 107, 220, 280, 316, 328 |
| Mox20I | TGGCCA | 1 cut(s) | 244 |
| Mph1103I | ATGCAT | 1 cut(s) | 313 |
| MroNI | GCCGGC | 1 cut(s) | 303 |
| MscI | TGGCCA | 1 cut(s) | 244 |
| MseI | TTAA | 2 cut(s) | 6, 150 |
| MslI | CAYNNNNRTG | 1 cut(s) | 168 |
| Msp20I | TGGCCA | 1 cut(s) | 244 |
| MspI | CCGG | 1 cut(s) | 304 |
| MspR9I | CCNGG | 3 cut(s) | 24, 167, 329 |
| MvaI | CCWGG | 3 cut(s) | 24, 167, 329 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 209 |
| NaeI | GCCGGC | 1 cut(s) | 305 |
| NgoMIV | GCCGGC | 1 cut(s) | 303 |
| NlaIII | CATG | 4 cut(s) | 243, 311, 315, 356 |
| NsiI | ATGCAT | 1 cut(s) | 313 |
| NspI | RCATGY | 2 cut(s) | 311, 356 |
| PaeI | GCATGC | 2 cut(s) | 311, 356 |
| PdiI | GCCGGC | 1 cut(s) | 305 |
| PflFI | GACNNNGTC | 1 cut(s) | 24 |
| PkrI | GCNGC | 2 cut(s) | 79, 202 |
| PleI | GAGTC | 1 cut(s) | 244 |
| PpsI | GAGTC | 1 cut(s) | 244 |
| Psp6I | CCWGG | 3 cut(s) | 22, 165, 327 |
| PspFI | CCCAGC | 2 cut(s) | 48, 104 |
| PspGI | CCWGG | 3 cut(s) | 22, 165, 327 |
| PspPI | GGNCC | 2 cut(s) | 20, 325 |
| PsyI | GACNNNGTC | 1 cut(s) | 24 |
| RseI | CAYNNNNRTG | 1 cut(s) | 168 |
| SaqAI | TTAA | 2 cut(s) | 6, 150 |
| SatI | GCNGC | 2 cut(s) | 78, 201 |
| Sau96I | GGNCC | 2 cut(s) | 20, 325 |
| SchI | GAGTC | 1 cut(s) | 245 |
| ScrFI | CCNGG | 3 cut(s) | 24, 167, 329 |
| SduI | GDGCHC | 1 cut(s) | 257 |
| SetI | ASST | 8 cut(s) | 28, 79, 94, 106, 190, 202, 234, 373 |
| SexAI | ACCWGGT | 1 cut(s) | 22 |
| SfaNI | GCATC | 1 cut(s) | 290 |
| SinI | GGWCC | 1 cut(s) | 20 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 168 |
| SmlI | CTYRAG | 1 cut(s) | 233 |
| SmoI | CTYRAG | 1 cut(s) | 233 |
| SphI | GCATGC | 2 cut(s) | 311, 356 |
| Sse9I | AATT | 1 cut(s) | 146 |
| StyD4I | CCNGG | 3 cut(s) | 22, 165, 327 |
| TaaI | ACNGT | 2 cut(s) | 67, 280 |
| TaqI | TCGA | 2 cut(s) | 112, 259 |
| TasI | AATT | 1 cut(s) | 146 |
| Tru1I | TTAA | 2 cut(s) | 6, 150 |
| Tru9I | TTAA | 2 cut(s) | 6, 150 |
| TscAI | CASTG | 1 cut(s) | 22 |
| TseI | GCWGC | 2 cut(s) | 77, 200 |
| TspDTI | ATGAA | 1 cut(s) | 75 |
| TspRI | CASTG | 1 cut(s) | 22 |
| Tth111I | GACNNNGTC | 1 cut(s) | 24 |
| VpaK11BI | GGWCC | 1 cut(s) | 20 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 42, 332 |
| XceI | RCATGY | 2 cut(s) | 311, 356 |
| Zsp2I | ATGCAT | 1 cut(s) | 313 |