ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 251 |
| AclWI | GGATC | 4 cut(s) | 147, 160, 491, 632 |
| AcsI | RAATTY | 2 cut(s) | 298, 677 |
| AfaI | GTAC | 2 cut(s) | 93, 465 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 127 |
| AflIII | ACRYGT | 1 cut(s) | 124 |
| AgsI | TTSAA | 3 cut(s) | 547, 683, 719 |
| AjnI | CCWGG | 3 cut(s) | 61, 148, 359 |
| AluBI | AGCT | 5 cut(s) | 71, 203, 596, 605, 667 |
| AluI | AGCT | 5 cut(s) | 71, 203, 596, 605, 667 |
| Alw26I | GTCTC | 1 cut(s) | 430 |
| AlwI | GGATC | 4 cut(s) | 147, 160, 491, 632 |
| AoxI | GGCC | 1 cut(s) | 560 |
| ApeKI | GCWGC | 4 cut(s) | 265, 356, 482, 626 |
| ApoI | RAATTY | 2 cut(s) | 298, 677 |
| AspLEI | GCGC | 1 cut(s) | 531 |
| AspS9I | GGNCC | 2 cut(s) | 139, 723 |
| AsuC2I | CCSGG | 1 cut(s) | 158 |
| AsuHPI | GGTGA | 1 cut(s) | 307 |
| AvaII | GGWCC | 2 cut(s) | 139, 723 |
| BamHI | GGATCC | 1 cut(s) | 152 |
| BbvI | GCAGC | 4 cut(s) | 252, 368, 469, 638 |
| BccI | CCATC | 1 cut(s) | 468 |
| BciT130I | CCWGG | 3 cut(s) | 63, 150, 361 |
| BclI | TGATCA | 1 cut(s) | 442 |
| BcnI | CCSGG | 1 cut(s) | 158 |
| BcoDI | GTCTC | 1 cut(s) | 430 |
| BfaI | CTAG | 3 cut(s) | 380, 606, 623 |
| BisI | GCNGC | 4 cut(s) | 266, 357, 483, 627 |
| BlsI | GCNGC | 4 cut(s) | 267, 358, 484, 628 |
| Bme1390I | CCNGG | 4 cut(s) | 63, 150, 158, 361 |
| Bme18I | GGWCC | 2 cut(s) | 139, 723 |
| BmgT120I | GGNCC | 2 cut(s) | 139, 723 |
| BmiI | GGNNCC | 1 cut(s) | 154 |
| BmrFI | CCNGG | 4 cut(s) | 63, 150, 158, 361 |
| BmrI | ACTGGG | 1 cut(s) | 543 |
| BmsI | GCATC | 3 cut(s) | 219, 330, 579 |
| BmuI | ACTGGG | 1 cut(s) | 543 |
| BpuMI | CCSGG | 1 cut(s) | 158 |
| BsaBI | GATNNNNATC | 1 cut(s) | 101 |
| BsaJI | CCNNGG | 5 cut(s) | 61, 62, 156, 260, 360 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 155, 185 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 127 |
| Bse1I | ACTGG | 2 cut(s) | 328, 538 |
| Bse8I | GATNNNNATC | 1 cut(s) | 101 |
| BseBI | CCWGG | 3 cut(s) | 63, 150, 361 |
| BseDI | CCNNGG | 5 cut(s) | 61, 62, 156, 260, 360 |
| BseGI | GGATG | 3 cut(s) | 87, 136, 479 |
| BseJI | GATNNNNATC | 1 cut(s) | 101 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 127 |
| BseMII | CTCAG | 2 cut(s) | 294, 350 |
| BseNI | ACTGG | 2 cut(s) | 328, 538 |
| BseRI | GAGGAG | 3 cut(s) | 176, 333, 713 |
| BseXI | GCAGC | 4 cut(s) | 252, 368, 469, 638 |
| BshFI | GGCC | 1 cut(s) | 562 |
| BsiSI | CCGG | 2 cut(s) | 106, 158 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 127 |
| BsmAI | GTCTC | 1 cut(s) | 430 |
| BsmI | GAATGC | 2 cut(s) | 347, 553 |
| BsnI | GGCC | 1 cut(s) | 562 |
| Bsp143I | GATC | 6 cut(s) | 152, 205, 442, 496, 522, 637 |
| Bsp19I | CCATGG | 1 cut(s) | 260 |
| BspANI | GGCC | 1 cut(s) | 562 |
| BspCNI | CTCAG | 2 cut(s) | 295, 349 |
| BspLI | GGNNCC | 1 cut(s) | 154 |
| BspPI | GGATC | 4 cut(s) | 147, 160, 491, 632 |
| BsrI | ACTGG | 2 cut(s) | 328, 538 |
| BssECI | CCNNGG | 5 cut(s) | 61, 62, 156, 260, 360 |
| BssMI | GATC | 6 cut(s) | 152, 205, 442, 496, 522, 637 |
| BssT1I | CCWWGG | 1 cut(s) | 260 |
| Bst2UI | CCWGG | 3 cut(s) | 63, 150, 361 |
| Bst4CI | ACNGT | 2 cut(s) | 139, 460 |
| BstC8I | GCNNGC | 4 cut(s) | 240, 345, 487, 594 |
| BstDEI | CTNAG | 3 cut(s) | 303, 336, 503 |
| BstDSI | CCRYGG | 1 cut(s) | 260 |
| BstF5I | GGATG | 3 cut(s) | 87, 136, 479 |
| BstHHI | GCGC | 1 cut(s) | 531 |
| BstKTI | GATC | 6 cut(s) | 155, 208, 445, 499, 525, 640 |
| BstMAI | GTCTC | 1 cut(s) | 430 |
| BstMBI | GATC | 6 cut(s) | 152, 205, 442, 496, 522, 637 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 200, 221, 353, 548, 602 |
| BstNI | CCWGG | 3 cut(s) | 63, 150, 361 |
| BstNSI | RCATGY | 1 cut(s) | 128 |
| BstSCI | CCNGG | 4 cut(s) | 61, 148, 156, 359 |
| BstV1I | GCAGC | 4 cut(s) | 252, 368, 469, 638 |
| BstX2I | RGATCY | 2 cut(s) | 152, 496 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 411 |
| BstYI | RGATCY | 2 cut(s) | 152, 496 |
| BsuRI | GGCC | 1 cut(s) | 562 |
| BtgI | CCRYGG | 1 cut(s) | 260 |
| BtsCI | GGATG | 3 cut(s) | 87, 136, 479 |
| BtsI | GCAGTG | 1 cut(s) | 217 |
| BtsIMutI | CAGTG | 2 cut(s) | 217, 531 |
| Cac8I | GCNNGC | 4 cut(s) | 240, 345, 487, 594 |
| CfoI | GCGC | 1 cut(s) | 531 |
| Cfr13I | GGNCC | 2 cut(s) | 139, 723 |
| CpoI | CGGWCCG | 1 cut(s) | 139 |
| Csp6I | GTAC | 2 cut(s) | 92, 464 |
| CspI | CGGWCCG | 1 cut(s) | 139 |
| CviAII | CATG | 5 cut(s) | 125, 219, 261, 490, 709 |
| CviQI | GTAC | 2 cut(s) | 92, 464 |
| DdeI | CTNAG | 3 cut(s) | 303, 336, 503 |
| DpnI | GATC | 6 cut(s) | 154, 207, 444, 498, 524, 639 |
| DpnII | GATC | 6 cut(s) | 152, 205, 442, 496, 522, 637 |
| Eco130I | CCWWGG | 1 cut(s) | 260 |
| Eco47I | GGWCC | 2 cut(s) | 139, 723 |
| EcoRI | GAATTC | 1 cut(s) | 298 |
| EcoRII | CCWGG | 3 cut(s) | 61, 148, 359 |
| EcoT14I | CCWWGG | 1 cut(s) | 260 |
| ErhI | CCWWGG | 1 cut(s) | 260 |
| FaeI | CATG | 5 cut(s) | 128, 222, 264, 493, 712 |
| FatI | CATG | 5 cut(s) | 124, 218, 260, 489, 708 |
| FbaI | TGATCA | 1 cut(s) | 442 |
| FblI | GTMKAC | 1 cut(s) | 251 |
| Fnu4HI | GCNGC | 4 cut(s) | 266, 357, 483, 627 |
| FokI | GGATG | 3 cut(s) | 94, 143, 486 |
| Fsp4HI | GCNGC | 4 cut(s) | 266, 357, 483, 627 |
| FspBI | CTAG | 3 cut(s) | 380, 606, 623 |
| GlaI | GCGC | 1 cut(s) | 530 |
| GluI | GCNGC | 4 cut(s) | 266, 357, 483, 627 |
| HaeIII | GGCC | 1 cut(s) | 562 |
| HapII | CCGG | 2 cut(s) | 106, 158 |
| HhaI | GCGC | 1 cut(s) | 531 |
| Hin1II | CATG | 5 cut(s) | 128, 222, 264, 493, 712 |
| Hin6I | GCGC | 1 cut(s) | 529 |
| HinP1I | GCGC | 1 cut(s) | 529 |
| HincII | GTYRAC | 2 cut(s) | 174, 367 |
| HindII | GTYRAC | 2 cut(s) | 174, 367 |
| HinfI | GANTC | 3 cut(s) | 56, 248, 715 |
| HpaII | CCGG | 2 cut(s) | 106, 158 |
| HphI | GGTGA | 1 cut(s) | 307 |
| Hpy166II | GTNNAC | 3 cut(s) | 174, 252, 367 |
| Hpy188I | TCNGA | 6 cut(s) | 122, 143, 304, 339, 353, 447 |
| Hpy8I | GTNNAC | 3 cut(s) | 174, 252, 367 |
| HpyAV | CCTTC | 1 cut(s) | 472 |
| HpyCH4III | ACNGT | 2 cut(s) | 139, 460 |
| HpyCH4IV | ACGT | 1 cut(s) | 90 |
| HpyCH4V | TGCA | 4 cut(s) | 343, 489, 653, 674 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 200, 221, 353, 548, 602 |
| HpyF3I | CTNAG | 3 cut(s) | 303, 336, 503 |
| HpySE526I | ACGT | 1 cut(s) | 90 |
| Hsp92II | CATG | 5 cut(s) | 128, 222, 264, 493, 712 |
| HspAI | GCGC | 1 cut(s) | 529 |
| Ksp22I | TGATCA | 1 cut(s) | 442 |
| Kzo9I | GATC | 6 cut(s) | 152, 205, 442, 496, 522, 637 |
| LmnI | GCTCC | 1 cut(s) | 664 |
| Lsp1109I | GCAGC | 4 cut(s) | 252, 368, 469, 638 |
| LweI | GCATC | 3 cut(s) | 219, 330, 579 |
| MaeI | CTAG | 3 cut(s) | 380, 606, 623 |
| MaeII | ACGT | 1 cut(s) | 90 |
| MaeIII | GTNAC | 1 cut(s) | 133 |
| MalI | GATC | 6 cut(s) | 154, 207, 444, 498, 524, 639 |
| MboI | GATC | 6 cut(s) | 152, 205, 442, 496, 522, 637 |
| MboII | GAAGA | 1 cut(s) | 532 |
| MflI | RGATCY | 2 cut(s) | 152, 496 |
| MluCI | AATT | 4 cut(s) | 9, 298, 617, 677 |
| MlyI | GAGTC | 1 cut(s) | 257 |
| MmeI | TCCRAC | 2 cut(s) | 145, 665 |
| MnlI | CCTC | 8 cut(s) | 46, 154, 162, 311, 510, 552, 691, 694 |
| MseI | TTAA | 2 cut(s) | 282, 669 |
| MslI | CAYNNNNRTG | 2 cut(s) | 129, 259 |
| MspA1I | CMGCKG | 1 cut(s) | 203 |
| MspI | CCGG | 2 cut(s) | 106, 158 |
| MspR9I | CCNGG | 4 cut(s) | 63, 150, 158, 361 |
| Mva1269I | GAATGC | 2 cut(s) | 347, 553 |
| MvaI | CCWGG | 3 cut(s) | 63, 150, 361 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 200, 221, 353, 548, 602 |
| NciI | CCSGG | 1 cut(s) | 158 |
| NcoI | CCATGG | 1 cut(s) | 260 |
| NdeII | GATC | 6 cut(s) | 152, 205, 442, 496, 522, 637 |
| NlaIII | CATG | 5 cut(s) | 128, 222, 264, 493, 712 |
| NlaIV | GGNNCC | 1 cut(s) | 154 |
| NspI | RCATGY | 1 cut(s) | 128 |
| PasI | CCCWGGG | 1 cut(s) | 62 |
| PciI | ACATGT | 1 cut(s) | 124 |
| PctI | GAATGC | 2 cut(s) | 347, 553 |
| PfeI | GAWTC | 2 cut(s) | 56, 715 |
| PkrI | GCNGC | 4 cut(s) | 267, 358, 484, 628 |
| PleI | GAGTC | 1 cut(s) | 256 |
| PpsI | GAGTC | 1 cut(s) | 256 |
| PscI | ACATGT | 1 cut(s) | 124 |
| Psp6I | CCWGG | 3 cut(s) | 61, 148, 359 |
| PspGI | CCWGG | 3 cut(s) | 61, 148, 359 |
| PspN4I | GGNNCC | 1 cut(s) | 154 |
| PspPI | GGNCC | 2 cut(s) | 139, 723 |
| PsuI | RGATCY | 2 cut(s) | 152, 496 |
| PvuII | CAGCTG | 1 cut(s) | 203 |
| RsaI | GTAC | 2 cut(s) | 93, 465 |
| RsaNI | GTAC | 2 cut(s) | 92, 464 |
| RseI | CAYNNNNRTG | 2 cut(s) | 129, 259 |
| Rsr2I | CGGWCCG | 1 cut(s) | 139 |
| RsrII | CGGWCCG | 1 cut(s) | 139 |
| SaqAI | TTAA | 2 cut(s) | 282, 669 |
| SatI | GCNGC | 4 cut(s) | 266, 357, 483, 627 |
| Sau3AI | GATC | 6 cut(s) | 152, 205, 442, 496, 522, 637 |
| Sau96I | GGNCC | 2 cut(s) | 139, 723 |
| SchI | GAGTC | 1 cut(s) | 257 |
| ScrFI | CCNGG | 4 cut(s) | 63, 150, 158, 361 |
| SfaNI | GCATC | 3 cut(s) | 219, 330, 579 |
| SinI | GGWCC | 2 cut(s) | 139, 723 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 129, 259 |
| Sse9I | AATT | 4 cut(s) | 9, 298, 617, 677 |
| SspMI | CTAG | 3 cut(s) | 380, 606, 623 |
| StyD4I | CCNGG | 4 cut(s) | 61, 148, 156, 359 |
| StyI | CCWWGG | 1 cut(s) | 260 |
| TaaI | ACNGT | 2 cut(s) | 139, 460 |
| TaiI | ACGT | 1 cut(s) | 93 |
| TaqI | TCGA | 2 cut(s) | 577, 601 |
| TaqII | GACCGA | 1 cut(s) | 191 |
| TasI | AATT | 4 cut(s) | 9, 298, 617, 677 |
| TatI | WGTACW | 1 cut(s) | 463 |
| TfiI | GAWTC | 2 cut(s) | 56, 715 |
| Tru1I | TTAA | 2 cut(s) | 282, 669 |
| Tru9I | TTAA | 2 cut(s) | 282, 669 |
| TscAI | CASTG | 2 cut(s) | 217, 538 |
| TseI | GCWGC | 4 cut(s) | 265, 356, 482, 626 |
| TspDTI | ATGAA | 3 cut(s) | 98, 300, 630 |
| TspGWI | ACGGA | 1 cut(s) | 710 |
| TspRI | CASTG | 2 cut(s) | 217, 538 |
| VpaK11BI | GGWCC | 2 cut(s) | 139, 723 |
| XapI | RAATTY | 2 cut(s) | 298, 677 |
| XceI | RCATGY | 1 cut(s) | 128 |
| XmiI | GTMKAC | 1 cut(s) | 251 |
| XspI | CTAG | 3 cut(s) | 380, 606, 623 |