ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 272 |
| AclWI | GGATC | 1 cut(s) | 229 |
| AfaI | GTAC | 1 cut(s) | 162 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 109 |
| AgsI | TTSAA | 1 cut(s) | 352 |
| AjnI | CCWGG | 2 cut(s) | 102, 130 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 241, 273 |
| AleI | CACNNNNGTG | 1 cut(s) | 232 |
| AluBI | AGCT | 1 cut(s) | 64 |
| AluI | AGCT | 1 cut(s) | 64 |
| Alw26I | GTCTC | 4 cut(s) | 208, 232, 295, 339 |
| AlwI | GGATC | 1 cut(s) | 229 |
| AoxI | GGCC | 1 cut(s) | 333 |
| ApeKI | GCWGC | 1 cut(s) | 311 |
| AspA2I | CCTAGG | 1 cut(s) | 20 |
| AspLEI | GCGC | 2 cut(s) | 265, 316 |
| AspS9I | GGNCC | 2 cut(s) | 212, 333 |
| AvaII | GGWCC | 1 cut(s) | 212 |
| AvrII | CCTAGG | 1 cut(s) | 20 |
| BbvI | GCAGC | 1 cut(s) | 323 |
| BciT130I | CCWGG | 2 cut(s) | 104, 132 |
| BclI | TGATCA | 1 cut(s) | 52 |
| BcoDI | GTCTC | 4 cut(s) | 208, 232, 295, 339 |
| BfaI | CTAG | 2 cut(s) | 21, 366 |
| BisI | GCNGC | 1 cut(s) | 312 |
| BlnI | CCTAGG | 1 cut(s) | 20 |
| BlsI | GCNGC | 1 cut(s) | 313 |
| Bme1390I | CCNGG | 2 cut(s) | 104, 132 |
| Bme18I | GGWCC | 1 cut(s) | 212 |
| BmgT120I | GGNCC | 2 cut(s) | 212, 333 |
| BmrFI | CCNGG | 2 cut(s) | 104, 132 |
| BpmI | CTGGAG | 1 cut(s) | 153 |
| BpuEI | CTTGAG | 1 cut(s) | 86 |
| BsaAI | YACGTR | 1 cut(s) | 77 |
| BsaBI | GATNNNNATC | 1 cut(s) | 279 |
| BsaJI | CCNNGG | 3 cut(s) | 20, 103, 329 |
| BsaWI | WCCGGW | 1 cut(s) | 245 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 109 |
| Bse8I | GATNNNNATC | 1 cut(s) | 279 |
| BseBI | CCWGG | 2 cut(s) | 104, 132 |
| BseDI | CCNNGG | 3 cut(s) | 20, 103, 329 |
| BseGI | GGATG | 2 cut(s) | 156, 205 |
| BseJI | GATNNNNATC | 1 cut(s) | 279 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 109 |
| BseMII | CTCAG | 1 cut(s) | 363 |
| BseRI | GAGGAG | 1 cut(s) | 128 |
| BseXI | GCAGC | 1 cut(s) | 323 |
| BshFI | GGCC | 1 cut(s) | 335 |
| BsiSI | CCGG | 1 cut(s) | 246 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 109 |
| BsmAI | GTCTC | 4 cut(s) | 208, 232, 295, 339 |
| BsnI | GGCC | 1 cut(s) | 335 |
| Bsp143I | GATC | 3 cut(s) | 3, 52, 221 |
| BspACI | CCGC | 1 cut(s) | 272 |
| BspANI | GGCC | 1 cut(s) | 335 |
| BspCNI | CTCAG | 1 cut(s) | 364 |
| BspPI | GGATC | 1 cut(s) | 229 |
| BssECI | CCNNGG | 3 cut(s) | 20, 103, 329 |
| BssMI | GATC | 3 cut(s) | 3, 52, 221 |
| BssT1I | CCWWGG | 2 cut(s) | 20, 329 |
| Bst2UI | CCWGG | 2 cut(s) | 104, 132 |
| BstBAI | YACGTR | 1 cut(s) | 77 |
| BstDEI | CTNAG | 1 cut(s) | 372 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 107 |
| BstF5I | GGATG | 2 cut(s) | 156, 205 |
| BstHHI | GCGC | 2 cut(s) | 265, 316 |
| BstKTI | GATC | 3 cut(s) | 6, 55, 224 |
| BstMAI | GTCTC | 4 cut(s) | 208, 232, 295, 339 |
| BstMBI | GATC | 3 cut(s) | 3, 52, 221 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 269 |
| BstNI | CCWGG | 2 cut(s) | 104, 132 |
| BstNSI | RCATGY | 1 cut(s) | 197 |
| BstSCI | CCNGG | 2 cut(s) | 102, 130 |
| BstSNI | TACGTA | 1 cut(s) | 77 |
| BstV1I | GCAGC | 1 cut(s) | 323 |
| BstX2I | RGATCY | 1 cut(s) | 221 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 234 |
| BstYI | RGATCY | 1 cut(s) | 221 |
| BsuRI | GGCC | 1 cut(s) | 335 |
| BtsCI | GGATG | 2 cut(s) | 156, 205 |
| CfoI | GCGC | 2 cut(s) | 265, 316 |
| Cfr13I | GGNCC | 2 cut(s) | 212, 333 |
| Csp6I | GTAC | 1 cut(s) | 161 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 177, 212 |
| CviAII | CATG | 1 cut(s) | 194 |
| CviJI | RGCY | 4 cut(s) | 64, 293, 335, 371 |
| CviKI_1 | RGCY | 4 cut(s) | 64, 293, 335, 371 |
| CviQI | GTAC | 1 cut(s) | 161 |
| DdeI | CTNAG | 1 cut(s) | 372 |
| DpnI | GATC | 3 cut(s) | 5, 54, 223 |
| DpnII | GATC | 3 cut(s) | 3, 52, 221 |
| Eco105I | TACGTA | 1 cut(s) | 77 |
| Eco130I | CCWWGG | 2 cut(s) | 20, 329 |
| Eco47I | GGWCC | 1 cut(s) | 212 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 107 |
| EcoRII | CCWGG | 2 cut(s) | 102, 130 |
| EcoT14I | CCWWGG | 2 cut(s) | 20, 329 |
| ErhI | CCWWGG | 2 cut(s) | 20, 329 |
| FaeI | CATG | 1 cut(s) | 197 |
| FaiI | YATR | 4 cut(s) | 148, 195, 253, 255 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 48, 80 |
| FatI | CATG | 1 cut(s) | 193 |
| FbaI | TGATCA | 1 cut(s) | 52 |
| Fnu4HI | GCNGC | 1 cut(s) | 312 |
| FokI | GGATG | 2 cut(s) | 163, 212 |
| Fsp4HI | GCNGC | 1 cut(s) | 312 |
| FspBI | CTAG | 2 cut(s) | 21, 366 |
| GlaI | GCGC | 2 cut(s) | 264, 315 |
| GluI | GCNGC | 1 cut(s) | 312 |
| GsuI | CTGGAG | 1 cut(s) | 153 |
| HaeIII | GGCC | 1 cut(s) | 335 |
| HapII | CCGG | 1 cut(s) | 246 |
| HhaI | GCGC | 2 cut(s) | 265, 316 |
| Hin1II | CATG | 1 cut(s) | 197 |
| Hin6I | GCGC | 2 cut(s) | 263, 314 |
| HinP1I | GCGC | 2 cut(s) | 263, 314 |
| HinfI | GANTC | 2 cut(s) | 68, 125 |
| HpaII | CCGG | 1 cut(s) | 246 |
| Hpy188I | TCNGA | 2 cut(s) | 8, 40 |
| HpyCH4IV | ACGT | 3 cut(s) | 76, 159, 287 |
| HpyCH4V | TGCA | 1 cut(s) | 188 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 269 |
| HpyF3I | CTNAG | 1 cut(s) | 372 |
| HpySE526I | ACGT | 3 cut(s) | 76, 159, 287 |
| Hsp92II | CATG | 1 cut(s) | 197 |
| HspAI | GCGC | 2 cut(s) | 263, 314 |
| Ksp22I | TGATCA | 1 cut(s) | 52 |
| Kzo9I | GATC | 3 cut(s) | 3, 52, 221 |
| LpnPI | CCDG | 8 cut(s) | 89, 116, 117, 144, 204, 228, 259, 366 |
| Lsp1109I | GCAGC | 1 cut(s) | 323 |
| MaeI | CTAG | 2 cut(s) | 21, 366 |
| MaeII | ACGT | 3 cut(s) | 76, 159, 287 |
| MalI | GATC | 3 cut(s) | 5, 54, 223 |
| MboI | GATC | 3 cut(s) | 3, 52, 221 |
| MfeI | CAATTG | 1 cut(s) | 305 |
| MflI | RGATCY | 1 cut(s) | 221 |
| MluCI | AATT | 3 cut(s) | 165, 178, 305 |
| MlyI | GAGTC | 1 cut(s) | 77 |
| MnlI | CCTC | 2 cut(s) | 56, 106 |
| MseI | TTAA | 1 cut(s) | 81 |
| MslI | CAYNNNNRTG | 2 cut(s) | 198, 232 |
| MspA1I | CMGCKG | 1 cut(s) | 272 |
| MspI | CCGG | 1 cut(s) | 246 |
| MspR9I | CCNGG | 2 cut(s) | 104, 132 |
| MunI | CAATTG | 1 cut(s) | 305 |
| MvaI | CCWGG | 2 cut(s) | 104, 132 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 269 |
| NdeII | GATC | 3 cut(s) | 3, 52, 221 |
| NlaIII | CATG | 1 cut(s) | 197 |
| NspI | RCATGY | 1 cut(s) | 197 |
| OliI | CACNNNNGTG | 1 cut(s) | 232 |
| PfeI | GAWTC | 1 cut(s) | 125 |
| PfoI | TCCNGGA | 1 cut(s) | 130 |
| PkrI | GCNGC | 1 cut(s) | 313 |
| PleI | GAGTC | 1 cut(s) | 76 |
| PpsI | GAGTC | 1 cut(s) | 76 |
| Ppu21I | YACGTR | 1 cut(s) | 77 |
| Psp6I | CCWGG | 2 cut(s) | 102, 130 |
| PspGI | CCWGG | 2 cut(s) | 102, 130 |
| PspPI | GGNCC | 2 cut(s) | 212, 333 |
| PsuI | RGATCY | 1 cut(s) | 221 |
| RsaI | GTAC | 1 cut(s) | 162 |
| RsaNI | GTAC | 1 cut(s) | 161 |
| RseI | CAYNNNNRTG | 2 cut(s) | 198, 232 |
| SaqAI | TTAA | 1 cut(s) | 81 |
| SatI | GCNGC | 1 cut(s) | 312 |
| Sau3AI | GATC | 3 cut(s) | 3, 52, 221 |
| Sau96I | GGNCC | 2 cut(s) | 212, 333 |
| SchI | GAGTC | 1 cut(s) | 77 |
| ScrFI | CCNGG | 2 cut(s) | 104, 132 |
| SetI | ASST | 6 cut(s) | 22, 66, 79, 162, 290, 331 |
| SinI | GGWCC | 1 cut(s) | 212 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 198, 232 |
| SmlI | CTYRAG | 1 cut(s) | 65 |
| SmoI | CTYRAG | 1 cut(s) | 65 |
| SnaBI | TACGTA | 1 cut(s) | 77 |
| Sse9I | AATT | 3 cut(s) | 165, 178, 305 |
| SsiI | CCGC | 1 cut(s) | 272 |
| SspMI | CTAG | 2 cut(s) | 21, 366 |
| StyD4I | CCNGG | 2 cut(s) | 102, 130 |
| StyI | CCWWGG | 2 cut(s) | 20, 329 |
| TaiI | ACGT | 3 cut(s) | 79, 162, 290 |
| TaqI | TCGA | 1 cut(s) | 283 |
| TasI | AATT | 3 cut(s) | 165, 178, 305 |
| TfiI | GAWTC | 1 cut(s) | 125 |
| Tru1I | TTAA | 1 cut(s) | 81 |
| Tru9I | TTAA | 1 cut(s) | 81 |
| TseI | GCWGC | 1 cut(s) | 311 |
| TspDTI | ATGAA | 1 cut(s) | 167 |
| VpaK11BI | GGWCC | 1 cut(s) | 212 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 107 |
| XceI | RCATGY | 1 cut(s) | 197 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 171 |
| XmaJI | CCTAGG | 1 cut(s) | 20 |
| XspI | CTAG | 2 cut(s) | 21, 366 |