Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1201 |
| AccB1I | GGYRCC | 1 cut(s) | 501 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 865 |
| AccII | CGCG | 1 cut(s) | 109 |
| AccIII | TCCGGA | 1 cut(s) | 55 |
| AciI | CCGC | 3 cut(s) | 240, 481, 630 |
| AclWI | GGATC | 2 cut(s) | 543, 584 |
| AcsI | RAATTY | 2 cut(s) | 1078, 1085 |
| AcuI | CTGAAG | 1 cut(s) | 622 |
| AfaI | GTAC | 2 cut(s) | 420, 885 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 62, 378, 642, 661, 696, 865, 893, 894 |
| AgsI | TTSAA | 3 cut(s) | 827, 973, 1184 |
| AhlI | ACTAGT | 1 cut(s) | 488 |
| AjiI | CACGTC | 1 cut(s) | 1189 |
| AjnI | CCWGG | 5 cut(s) | 34, 249, 333, 858, 875 |
| Alw21I | GWGCWC | 1 cut(s) | 22 |
| Alw26I | GTCTC | 2 cut(s) | 417, 503 |
| AlwI | GGATC | 2 cut(s) | 543, 584 |
| Ama87I | CYCGRG | 1 cut(s) | 1042 |
| Aor13HI | TCCGGA | 1 cut(s) | 55 |
| AoxI | GGCC | 2 cut(s) | 461, 705 |
| ApeKI | GCWGC | 5 cut(s) | 236, 517, 520, 623, 1024 |
| ApoI | RAATTY | 2 cut(s) | 1078, 1085 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1202 |
| AspLEI | GCGC | 1 cut(s) | 344 |
| AspS9I | GGNCC | 5 cut(s) | 461, 632, 705, 775, 1000 |
| AsuC2I | CCSGG | 2 cut(s) | 506, 586 |
| AsuHPI | GGTGA | 4 cut(s) | 24, 104, 292, 347 |
| AsuNHI | GCTAGC | 1 cut(s) | 626 |
| AvaI | CYCGRG | 1 cut(s) | 1042 |
| AvaII | GGWCC | 3 cut(s) | 632, 775, 1000 |
| BaeGI | GKGCMC | 1 cut(s) | 504 |
| BanI | GGYRCC | 1 cut(s) | 501 |
| BanII | GRGCYC | 1 cut(s) | 902 |
| BbsI | GAAGAC | 2 cut(s) | 264, 1191 |
| Bbv12I | GWGCWC | 1 cut(s) | 22 |
| BbvI | GCAGC | 5 cut(s) | 223, 507, 529, 635, 1011 |
| BccI | CCATC | 1 cut(s) | 636 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 9, 43, 354, 388, 899, 933 |
| BciT130I | CCWGG | 5 cut(s) | 36, 251, 335, 860, 877 |
| BciVI | GTATCC | 1 cut(s) | 925 |
| BcnI | CCSGG | 2 cut(s) | 506, 586 |
| BcoDI | GTCTC | 2 cut(s) | 417, 503 |
| BcuI | ACTAGT | 1 cut(s) | 488 |
| BfaI | CTAG | 5 cut(s) | 359, 489, 627, 741, 1221 |
| BfmI | CTRYAG | 1 cut(s) | 1025 |
| BfuAI | ACCTGC | 1 cut(s) | 1201 |
| BfuI | GTATCC | 1 cut(s) | 925 |
| BglII | AGATCT | 1 cut(s) | 746 |
| BisI | GCNGC | 6 cut(s) | 237, 240, 518, 521, 624, 1025 |
| BlpI | GCTNAGC | 1 cut(s) | 232 |
| BlsI | GCNGC | 6 cut(s) | 238, 241, 519, 522, 625, 1026 |
| Bme1390I | CCNGG | 7 cut(s) | 36, 251, 335, 506, 586, 860, 877 |
| Bme18I | GGWCC | 3 cut(s) | 632, 775, 1000 |
| BmeT110I | CYCGRG | 1 cut(s) | 1042 |
| BmgBI | CACGTC | 1 cut(s) | 1189 |
| BmgT120I | GGNCC | 5 cut(s) | 461, 632, 705, 775, 1000 |
| BmiI | GGNNCC | 5 cut(s) | 503, 634, 688, 706, 899 |
| BmrFI | CCNGG | 7 cut(s) | 36, 251, 335, 506, 586, 860, 877 |
| BmsI | GCATC | 4 cut(s) | 532, 640, 805, 995 |
| BmtI | GCTAGC | 1 cut(s) | 630 |
| BpiI | GAAGAC | 2 cut(s) | 264, 1191 |
| BpmI | CTGGAG | 1 cut(s) | 1049 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 232 |
| BpuEI | CTTGAG | 3 cut(s) | 111, 330, 703 |
| BpuMI | CCSGG | 2 cut(s) | 506, 586 |
| Bsa29I | ATCGAT | 1 cut(s) | 120 |
| BsaBI | GATNNNNATC | 1 cut(s) | 291 |
| BsaJI | CCNNGG | 3 cut(s) | 311, 585, 858 |
| BsaWI | WCCGGW | 1 cut(s) | 55 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 62, 378, 642, 661, 696, 865, 893, 894 |
| Bse1I | ACTGG | 1 cut(s) | 1066 |
| Bse8I | GATNNNNATC | 1 cut(s) | 291 |
| BseAI | TCCGGA | 1 cut(s) | 55 |
| BseBI | CCWGG | 5 cut(s) | 36, 251, 335, 860, 877 |
| BseCI | ATCGAT | 1 cut(s) | 120 |
| BseDI | CCNNGG | 3 cut(s) | 311, 585, 858 |
| BseGI | GGATG | 1 cut(s) | 457 |
| BseJI | GATNNNNATC | 1 cut(s) | 291 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 62, 378, 642, 661, 696, 865, 893, 894 |
| BseMII | CTCAG | 1 cut(s) | 705 |
| BseNI | ACTGG | 1 cut(s) | 1066 |
| BseRI | GAGGAG | 1 cut(s) | 28 |
| BseSI | GKGCMC | 1 cut(s) | 504 |
| BseXI | GCAGC | 5 cut(s) | 223, 507, 529, 635, 1011 |
| BseYI | CCCAGC | 1 cut(s) | 206 |
| Bsh1236I | CGCG | 1 cut(s) | 109 |
| BshFI | GGCC | 2 cut(s) | 463, 707 |
| BshNI | GGYRCC | 1 cut(s) | 501 |
| BshVI | ATCGAT | 1 cut(s) | 120 |
| BsiHKAI | GWGCWC | 1 cut(s) | 22 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1042 |
| BsiSI | CCGG | 3 cut(s) | 56, 506, 585 |
| BslFI | GGGAC | 1 cut(s) | 971 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 62, 378, 642, 661, 696, 865, 893, 894 |
| BsmAI | GTCTC | 2 cut(s) | 417, 503 |
| BsmBI | CGTCTC | 1 cut(s) | 417 |
| BsmFI | GGGAC | 1 cut(s) | 971 |
| BsnI | GGCC | 2 cut(s) | 463, 707 |
| BsoBI | CYCGRG | 1 cut(s) | 1042 |
| Bsp1286I | GDGCHC | 3 cut(s) | 22, 504, 902 |
| Bsp13I | TCCGGA | 1 cut(s) | 55 |
| Bsp143I | GATC | 5 cut(s) | 99, 535, 576, 673, 746 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 232 |
| BspACI | CCGC | 3 cut(s) | 240, 481, 630 |
| BspANI | GGCC | 2 cut(s) | 463, 707 |
| BspCNI | CTCAG | 1 cut(s) | 704 |
| BspDI | ATCGAT | 1 cut(s) | 120 |
| BspEI | TCCGGA | 1 cut(s) | 55 |
| BspFNI | CGCG | 1 cut(s) | 109 |
| BspLI | GGNNCC | 5 cut(s) | 503, 634, 688, 706, 899 |
| BspMAI | CTGCAG | 1 cut(s) | 1029 |
| BspMI | ACCTGC | 1 cut(s) | 1201 |
| BspOI | GCTAGC | 1 cut(s) | 630 |
| BspPI | GGATC | 2 cut(s) | 543, 584 |
| BspQI | GCTCTTC | 2 cut(s) | 981, 1093 |
| BspT107I | GGYRCC | 1 cut(s) | 501 |
| BsrI | ACTGG | 1 cut(s) | 1066 |
| BssECI | CCNNGG | 3 cut(s) | 311, 585, 858 |
| BssMI | GATC | 5 cut(s) | 99, 535, 576, 673, 746 |
| BssT1I | CCWWGG | 1 cut(s) | 311 |
| Bst2UI | CCWGG | 5 cut(s) | 36, 251, 335, 860, 877 |
| Bst4CI | ACNGT | 2 cut(s) | 418, 883 |
| Bst6I | CTCTTC | 3 cut(s) | 109, 981, 1093 |
| BstC8I | GCNNGC | 4 cut(s) | 340, 384, 628, 993 |
| BstDEI | CTNAG | 2 cut(s) | 232, 691 |
| BstF5I | GGATG | 1 cut(s) | 457 |
| BstFNI | CGCG | 1 cut(s) | 109 |
| BstHHI | GCGC | 1 cut(s) | 344 |
| BstKTI | GATC | 5 cut(s) | 102, 538, 579, 676, 749 |
| BstMAI | GTCTC | 2 cut(s) | 417, 503 |
| BstMBI | GATC | 5 cut(s) | 99, 535, 576, 673, 746 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1030 |
| BstNI | CCWGG | 5 cut(s) | 36, 251, 335, 860, 877 |
| BstNSI | RCATGY | 1 cut(s) | 342 |
| BstSCI | CCNGG | 7 cut(s) | 34, 249, 333, 504, 584, 858, 875 |
| BstSFI | CTRYAG | 1 cut(s) | 1025 |
| BstSLI | GKGCMC | 1 cut(s) | 504 |
| BstUI | CGCG | 1 cut(s) | 109 |
| BstV1I | GCAGC | 5 cut(s) | 223, 507, 529, 635, 1011 |
| BstV2I | GAAGAC | 2 cut(s) | 264, 1191 |
| BstX2I | RGATCY | 2 cut(s) | 535, 746 |
| BstYI | RGATCY | 2 cut(s) | 535, 746 |
| Bsu15I | ATCGAT | 1 cut(s) | 120 |
| BsuI | GTATCC | 1 cut(s) | 925 |
| BsuRI | GGCC | 2 cut(s) | 463, 707 |
| BsuTUI | ATCGAT | 1 cut(s) | 120 |
| BtrI | CACGTC | 1 cut(s) | 1189 |
| BtsCI | GGATG | 1 cut(s) | 457 |
| BveI | ACCTGC | 1 cut(s) | 1201 |
| Cac8I | GCNNGC | 4 cut(s) | 340, 384, 628, 993 |
| CfoI | GCGC | 1 cut(s) | 344 |
| Cfr13I | GGNCC | 5 cut(s) | 461, 632, 705, 775, 1000 |
| ClaI | ATCGAT | 1 cut(s) | 120 |
| CpoI | CGGWCCG | 1 cut(s) | 1000 |
| CseI | GACGC | 1 cut(s) | 98 |
| CsiI | ACCWGGT | 1 cut(s) | 34 |
| Csp6I | GTAC | 2 cut(s) | 419, 884 |
| CspI | CGGWCCG | 1 cut(s) | 1000 |
| CviAII | CATG | 5 cut(s) | 339, 513, 531, 553, 845 |
| CviQI | GTAC | 2 cut(s) | 419, 884 |
| DdeI | CTNAG | 2 cut(s) | 232, 691 |
| DpnI | GATC | 5 cut(s) | 101, 537, 578, 675, 748 |
| DpnII | GATC | 5 cut(s) | 99, 535, 576, 673, 746 |
| Eam1104I | CTCTTC | 3 cut(s) | 109, 981, 1093 |
| EarI | CTCTTC | 3 cut(s) | 109, 981, 1093 |
| Eco130I | CCWWGG | 1 cut(s) | 311 |
| Eco24I | GRGCYC | 1 cut(s) | 902 |
| Eco32I | GATATC | 1 cut(s) | 472 |
| Eco47I | GGWCC | 3 cut(s) | 632, 775, 1000 |
| Eco57I | CTGAAG | 1 cut(s) | 622 |
| Eco88I | CYCGRG | 1 cut(s) | 1042 |
| EcoO109I | RGGNCCY | 2 cut(s) | 461, 705 |
| EcoRI | GAATTC | 1 cut(s) | 1078 |
| EcoRII | CCWGG | 5 cut(s) | 34, 249, 333, 858, 875 |
| EcoRV | GATATC | 1 cut(s) | 472 |
| EcoT14I | CCWWGG | 1 cut(s) | 311 |
| EcoT38I | GRGCYC | 1 cut(s) | 902 |
| ErhI | CCWWGG | 1 cut(s) | 311 |
| Esp3I | CGTCTC | 1 cut(s) | 417 |
| FaeI | CATG | 5 cut(s) | 342, 516, 534, 556, 848 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 54, 86, 179, 211 |
| FaqI | GGGAC | 1 cut(s) | 971 |
| FatI | CATG | 5 cut(s) | 338, 512, 530, 552, 844 |
| Fnu4HI | GCNGC | 6 cut(s) | 237, 240, 518, 521, 624, 1025 |
| FokI | GGATG | 1 cut(s) | 464 |
| FriOI | GRGCYC | 1 cut(s) | 902 |
| Fsp4HI | GCNGC | 6 cut(s) | 237, 240, 518, 521, 624, 1025 |
| FspBI | CTAG | 5 cut(s) | 359, 489, 627, 741, 1221 |
| GlaI | GCGC | 1 cut(s) | 343 |
| GluI | GCNGC | 6 cut(s) | 237, 240, 518, 521, 624, 1025 |
| GsaI | CCCAGC | 1 cut(s) | 210 |
| GsuI | CTGGAG | 1 cut(s) | 1049 |
| HaeIII | GGCC | 2 cut(s) | 463, 707 |
| HapII | CCGG | 3 cut(s) | 56, 506, 585 |
| HgaI | GACGC | 1 cut(s) | 98 |
| HhaI | GCGC | 1 cut(s) | 344 |
| Hin1II | CATG | 5 cut(s) | 342, 516, 534, 556, 848 |
| Hin6I | GCGC | 1 cut(s) | 342 |
| HinP1I | GCGC | 1 cut(s) | 342 |
| HincII | GTYRAC | 2 cut(s) | 430, 730 |
| HindII | GTYRAC | 2 cut(s) | 430, 730 |
| HindIII | AAGCTT | 2 cut(s) | 348, 849 |
| HinfI | GANTC | 7 cut(s) | 117, 316, 323, 401, 613, 1040, 1108 |
| HpaI | GTTAAC | 1 cut(s) | 730 |
| HpaII | CCGG | 3 cut(s) | 56, 506, 585 |
| HphI | GGTGA | 4 cut(s) | 24, 104, 292, 347 |
| Hpy166II | GTNNAC | 4 cut(s) | 9, 430, 486, 730 |
| Hpy188I | TCNGA | 6 cut(s) | 328, 641, 694, 751, 1004, 1077 |
| Hpy188III | TCNNGA | 3 cut(s) | 56, 302, 320 |
| Hpy8I | GTNNAC | 4 cut(s) | 9, 430, 486, 730 |
| HpyAV | CCTTC | 2 cut(s) | 62, 646 |
| HpyCH4III | ACNGT | 2 cut(s) | 418, 883 |
| HpyCH4IV | ACGT | 3 cut(s) | 426, 944, 1188 |
| HpyCH4V | TGCA | 4 cut(s) | 523, 796, 910, 1027 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1030 |
| HpyF3I | CTNAG | 2 cut(s) | 232, 691 |
| HpySE526I | ACGT | 3 cut(s) | 426, 944, 1188 |
| Hsp92II | CATG | 5 cut(s) | 342, 516, 534, 556, 848 |
| HspAI | GCGC | 1 cut(s) | 342 |
| Kpn2I | TCCGGA | 1 cut(s) | 55 |
| KspAI | GTTAAC | 1 cut(s) | 730 |
| Kzo9I | GATC | 5 cut(s) | 99, 535, 576, 673, 746 |
| LguI | GCTCTTC | 2 cut(s) | 981, 1093 |
| LmnI | GCTCC | 3 cut(s) | 607, 897, 1068 |
| Lsp1109I | GCAGC | 5 cut(s) | 223, 507, 529, 635, 1011 |
| LweI | GCATC | 4 cut(s) | 532, 640, 805, 995 |
| MabI | ACCWGGT | 1 cut(s) | 34 |
| MaeI | CTAG | 5 cut(s) | 359, 489, 627, 741, 1221 |
| MaeII | ACGT | 3 cut(s) | 426, 944, 1188 |
| MaeIII | GTNAC | 4 cut(s) | 30, 110, 221, 1046 |
| MalI | GATC | 5 cut(s) | 101, 537, 578, 675, 748 |
| MboI | GATC | 5 cut(s) | 99, 535, 576, 673, 746 |
| MboII | GAAGA | 9 cut(s) | 96, 264, 269, 430, 839, 998, 1110, 1132, 1196 |
| MflI | RGATCY | 2 cut(s) | 535, 746 |
| MhlI | GDGCHC | 3 cut(s) | 22, 504, 902 |
| MluCI | AATT | 3 cut(s) | 305, 1078, 1085 |
| MlyI | GAGTC | 1 cut(s) | 1034 |
| MmeI | TCCRAC | 1 cut(s) | 930 |
| MroI | TCCGGA | 1 cut(s) | 55 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1202 |
| MseI | TTAA | 3 cut(s) | 594, 729, 1131 |
| MslI | CAYNNNNRTG | 1 cut(s) | 446 |
| MspA1I | CMGCKG | 1 cut(s) | 520 |
| MspI | CCGG | 3 cut(s) | 56, 506, 585 |
| MspR9I | CCNGG | 7 cut(s) | 36, 251, 335, 506, 586, 860, 877 |
| MvaI | CCWGG | 5 cut(s) | 36, 251, 335, 860, 877 |
| MvnI | CGCG | 1 cut(s) | 109 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1030 |
| NciI | CCSGG | 2 cut(s) | 506, 586 |
| NdeII | GATC | 5 cut(s) | 99, 535, 576, 673, 746 |
| NheI | GCTAGC | 1 cut(s) | 626 |
| NlaIII | CATG | 5 cut(s) | 342, 516, 534, 556, 848 |
| NlaIV | GGNNCC | 5 cut(s) | 503, 634, 688, 706, 899 |
| NmuCI | GTSAC | 3 cut(s) | 30, 110, 1046 |
| NspI | RCATGY | 1 cut(s) | 342 |
| PaeI | GCATGC | 1 cut(s) | 342 |
| PaeR7I | CTCGAG | 1 cut(s) | 1042 |
| PciSI | GCTCTTC | 2 cut(s) | 981, 1093 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 941 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1202 |
| PfeI | GAWTC | 6 cut(s) | 117, 316, 323, 401, 613, 1108 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 865 |
| PkrI | GCNGC | 6 cut(s) | 238, 241, 519, 522, 625, 1026 |
| PleI | GAGTC | 1 cut(s) | 1034 |
| PpsI | GAGTC | 1 cut(s) | 1034 |
| Psp6I | CCWGG | 5 cut(s) | 34, 249, 333, 858, 875 |
| PspFI | CCCAGC | 1 cut(s) | 206 |
| PspGI | CCWGG | 5 cut(s) | 34, 249, 333, 858, 875 |
| PspN4I | GGNNCC | 5 cut(s) | 503, 634, 688, 706, 899 |
| PspPI | GGNCC | 5 cut(s) | 461, 632, 705, 775, 1000 |
| PspXI | VCTCGAGB | 1 cut(s) | 1042 |
| PstI | CTGCAG | 1 cut(s) | 1029 |
| PsuI | RGATCY | 2 cut(s) | 535, 746 |
| PvuII | CAGCTG | 1 cut(s) | 520 |
| RsaI | GTAC | 2 cut(s) | 420, 885 |
| RsaNI | GTAC | 2 cut(s) | 419, 884 |
| RseI | CAYNNNNRTG | 1 cut(s) | 446 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1000 |
| RsrII | CGGWCCG | 1 cut(s) | 1000 |
| SapI | GCTCTTC | 2 cut(s) | 981, 1093 |
| SaqAI | TTAA | 3 cut(s) | 594, 729, 1131 |
| SatI | GCNGC | 6 cut(s) | 237, 240, 518, 521, 624, 1025 |
| Sau3AI | GATC | 5 cut(s) | 99, 535, 576, 673, 746 |
| Sau96I | GGNCC | 5 cut(s) | 461, 632, 705, 775, 1000 |
| SchI | GAGTC | 1 cut(s) | 1034 |
| ScrFI | CCNGG | 7 cut(s) | 36, 251, 335, 506, 586, 860, 877 |
| SduI | GDGCHC | 3 cut(s) | 22, 504, 902 |
| SexAI | ACCWGGT | 1 cut(s) | 34 |
| SfaNI | GCATC | 4 cut(s) | 532, 640, 805, 995 |
| SfcI | CTRYAG | 1 cut(s) | 1025 |
| Sfr274I | CTCGAG | 1 cut(s) | 1042 |
| SinI | GGWCC | 3 cut(s) | 632, 775, 1000 |
| SlaI | CTCGAG | 1 cut(s) | 1042 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 446 |
| SmlI | CTYRAG | 4 cut(s) | 126, 345, 718, 1042 |
| SmoI | CTYRAG | 4 cut(s) | 126, 345, 718, 1042 |
| SpeI | ACTAGT | 1 cut(s) | 488 |
| SphI | GCATGC | 1 cut(s) | 342 |
| Sse9I | AATT | 3 cut(s) | 305, 1078, 1085 |
| SsiI | CCGC | 3 cut(s) | 240, 481, 630 |
| SspMI | CTAG | 5 cut(s) | 359, 489, 627, 741, 1221 |
| StyD4I | CCNGG | 7 cut(s) | 34, 249, 333, 504, 584, 858, 875 |
| StyI | CCWWGG | 1 cut(s) | 311 |
| TaaI | ACNGT | 2 cut(s) | 418, 883 |
| TaiI | ACGT | 3 cut(s) | 429, 947, 1191 |
| TaqI | TCGA | 6 cut(s) | 120, 404, 563, 919, 1043, 1106 |
| TaqII | GACCGA | 1 cut(s) | 988 |
| TasI | AATT | 3 cut(s) | 305, 1078, 1085 |
| TauI | GCSGC | 1 cut(s) | 242 |
| TfiI | GAWTC | 6 cut(s) | 117, 316, 323, 401, 613, 1108 |
| Tru1I | TTAA | 3 cut(s) | 594, 729, 1131 |
| Tru9I | TTAA | 3 cut(s) | 594, 729, 1131 |
| TseFI | GTSAC | 3 cut(s) | 30, 110, 1046 |
| TseI | GCWGC | 5 cut(s) | 236, 517, 520, 623, 1024 |
| Tsp45I | GTSAC | 3 cut(s) | 30, 110, 1046 |
| TspDTI | ATGAA | 4 cut(s) | 303, 430, 861, 1211 |
| TspGWI | ACGGA | 2 cut(s) | 94, 797 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 865 |
| VpaK11BI | GGWCC | 3 cut(s) | 632, 775, 1000 |
| XapI | RAATTY | 2 cut(s) | 1078, 1085 |
| XceI | RCATGY | 1 cut(s) | 342 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 375 |
| XhoI | CTCGAG | 1 cut(s) | 1042 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1202 |
| XspI | CTAG | 5 cut(s) | 359, 489, 627, 741, 1221 |