ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 693 |
| Acc36I | ACCTGC | 1 cut(s) | 693 |
| Acc65I | GGTACC | 1 cut(s) | 41 |
| AccB1I | GGYRCC | 2 cut(s) | 32, 41 |
| AclWI | GGATC | 2 cut(s) | 273, 450 |
| AcsI | RAATTY | 1 cut(s) | 517 |
| AfaI | GTAC | 2 cut(s) | 43, 712 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 147, 190 |
| AgsI | TTSAA | 1 cut(s) | 461 |
| AhlI | ACTAGT | 1 cut(s) | 170 |
| AjnI | CCWGG | 1 cut(s) | 254 |
| AluBI | AGCT | 3 cut(s) | 431, 473, 556 |
| AluI | AGCT | 3 cut(s) | 431, 473, 556 |
| Alw26I | GTCTC | 3 cut(s) | 166, 533, 725 |
| AlwI | GGATC | 2 cut(s) | 273, 450 |
| ApeKI | GCWGC | 1 cut(s) | 132 |
| ApoI | RAATTY | 1 cut(s) | 517 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 298 |
| Asp718I | GGTACC | 1 cut(s) | 41 |
| AsuNHI | GCTAGC | 1 cut(s) | 650 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 33, 66 |
| BanI | GGYRCC | 2 cut(s) | 32, 41 |
| BbvI | GCAGC | 1 cut(s) | 144 |
| BccI | CCATC | 1 cut(s) | 648 |
| BciT130I | CCWGG | 1 cut(s) | 256 |
| BcoDI | GTCTC | 3 cut(s) | 166, 533, 725 |
| BcuI | ACTAGT | 1 cut(s) | 170 |
| BfaI | CTAG | 4 cut(s) | 171, 396, 474, 651 |
| BfuAI | ACCTGC | 1 cut(s) | 693 |
| BglII | AGATCT | 1 cut(s) | 392 |
| BisI | GCNGC | 1 cut(s) | 133 |
| BlsI | GCNGC | 1 cut(s) | 134 |
| Bme1390I | CCNGG | 1 cut(s) | 256 |
| BmiI | GGNNCC | 3 cut(s) | 34, 43, 213 |
| BmrFI | CCNGG | 1 cut(s) | 256 |
| BmtI | GCTAGC | 1 cut(s) | 654 |
| BsaI | GGTCTC | 1 cut(s) | 166 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 147, 190 |
| Bse1I | ACTGG | 1 cut(s) | 19 |
| BseBI | CCWGG | 1 cut(s) | 256 |
| BseGI | GGATG | 2 cut(s) | 406, 724 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 147, 190 |
| BseMII | CTCAG | 1 cut(s) | 705 |
| BseNI | ACTGG | 1 cut(s) | 19 |
| BseXI | GCAGC | 1 cut(s) | 144 |
| BshNI | GGYRCC | 2 cut(s) | 32, 41 |
| BslFI | GGGAC | 1 cut(s) | 632 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 147, 190 |
| BsmAI | GTCTC | 3 cut(s) | 166, 533, 725 |
| BsmFI | GGGAC | 1 cut(s) | 632 |
| BsmI | GAATGC | 1 cut(s) | 241 |
| Bso31I | GGTCTC | 1 cut(s) | 166 |
| Bsp143I | GATC | 3 cut(s) | 265, 392, 442 |
| BspCNI | CTCAG | 1 cut(s) | 706 |
| BspHI | TCATGA | 1 cut(s) | 424 |
| BspLI | GGNNCC | 3 cut(s) | 34, 43, 213 |
| BspMI | ACCTGC | 1 cut(s) | 693 |
| BspOI | GCTAGC | 1 cut(s) | 654 |
| BspPI | GGATC | 2 cut(s) | 273, 450 |
| BspT107I | GGYRCC | 2 cut(s) | 32, 41 |
| BspTNI | GGTCTC | 1 cut(s) | 166 |
| BsrI | ACTGG | 1 cut(s) | 19 |
| BssMI | GATC | 3 cut(s) | 265, 392, 442 |
| Bst2UI | CCWGG | 1 cut(s) | 256 |
| Bst4CI | ACNGT | 3 cut(s) | 491, 573, 736 |
| BstC8I | GCNNGC | 1 cut(s) | 652 |
| BstDEI | CTNAG | 2 cut(s) | 608, 714 |
| BstF5I | GGATG | 2 cut(s) | 406, 724 |
| BstKTI | GATC | 3 cut(s) | 268, 395, 445 |
| BstMAI | GTCTC | 3 cut(s) | 166, 533, 725 |
| BstMBI | GATC | 3 cut(s) | 265, 392, 442 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 479, 562 |
| BstNI | CCWGG | 1 cut(s) | 256 |
| BstNSI | RCATGY | 1 cut(s) | 60 |
| BstSCI | CCNGG | 1 cut(s) | 254 |
| BstV1I | GCAGC | 1 cut(s) | 144 |
| BstX2I | RGATCY | 2 cut(s) | 392, 442 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 380 |
| BstYI | RGATCY | 2 cut(s) | 392, 442 |
| BtsCI | GGATG | 2 cut(s) | 406, 724 |
| BveI | ACCTGC | 1 cut(s) | 693 |
| Cac8I | GCNNGC | 1 cut(s) | 652 |
| CciI | TCATGA | 1 cut(s) | 424 |
| CseI | GACGC | 1 cut(s) | 800 |
| Csp6I | GTAC | 2 cut(s) | 42, 711 |
| CviAII | CATG | 7 cut(s) | 47, 57, 190, 385, 425, 622, 775 |
| CviQI | GTAC | 2 cut(s) | 42, 711 |
| DdeI | CTNAG | 2 cut(s) | 608, 714 |
| DpnI | GATC | 3 cut(s) | 267, 394, 444 |
| DpnII | GATC | 3 cut(s) | 265, 392, 442 |
| Eco31I | GGTCTC | 1 cut(s) | 166 |
| EcoRI | GAATTC | 1 cut(s) | 517 |
| EcoRII | CCWGG | 1 cut(s) | 254 |
| FaeI | CATG | 7 cut(s) | 50, 60, 193, 388, 428, 625, 778 |
| FaqI | GGGAC | 1 cut(s) | 632 |
| FatI | CATG | 7 cut(s) | 46, 56, 189, 384, 424, 621, 774 |
| FauNDI | CATATG | 1 cut(s) | 220 |
| Fnu4HI | GCNGC | 1 cut(s) | 133 |
| FokI | GGATG | 2 cut(s) | 413, 731 |
| Fsp4HI | GCNGC | 1 cut(s) | 133 |
| FspBI | CTAG | 4 cut(s) | 171, 396, 474, 651 |
| GluI | GCNGC | 1 cut(s) | 133 |
| HgaI | GACGC | 1 cut(s) | 800 |
| Hin1II | CATG | 7 cut(s) | 50, 60, 193, 388, 428, 625, 778 |
| HinfI | GANTC | 4 cut(s) | 99, 410, 416, 541 |
| Hpy166II | GTNNAC | 3 cut(s) | 487, 711, 765 |
| Hpy188I | TCNGA | 4 cut(s) | 415, 551, 660, 828 |
| Hpy188III | TCNNGA | 4 cut(s) | 232, 269, 425, 530 |
| Hpy8I | GTNNAC | 3 cut(s) | 487, 711, 765 |
| Hpy99I | CGWCG | 1 cut(s) | 279 |
| HpyAV | CCTTC | 1 cut(s) | 351 |
| HpyCH4III | ACNGT | 3 cut(s) | 491, 573, 736 |
| HpyCH4IV | ACGT | 1 cut(s) | 225 |
| HpyCH4V | TGCA | 2 cut(s) | 60, 239 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 479, 562 |
| HpyF3I | CTNAG | 2 cut(s) | 608, 714 |
| HpySE526I | ACGT | 1 cut(s) | 225 |
| Hsp92II | CATG | 7 cut(s) | 50, 60, 193, 388, 428, 625, 778 |
| KpnI | GGTACC | 1 cut(s) | 45 |
| Kzo9I | GATC | 3 cut(s) | 265, 392, 442 |
| LmnI | GCTCC | 2 cut(s) | 211, 562 |
| Lsp1109I | GCAGC | 1 cut(s) | 144 |
| MaeI | CTAG | 4 cut(s) | 171, 396, 474, 651 |
| MaeII | ACGT | 1 cut(s) | 225 |
| MaeIII | GTNAC | 1 cut(s) | 611 |
| MalI | GATC | 3 cut(s) | 267, 394, 444 |
| MboI | GATC | 3 cut(s) | 265, 392, 442 |
| MboII | GAAGA | 2 cut(s) | 473, 762 |
| MflI | RGATCY | 2 cut(s) | 392, 442 |
| MluCI | AATT | 5 cut(s) | 76, 107, 456, 517, 725 |
| MlyI | GAGTC | 2 cut(s) | 425, 535 |
| MmeI | TCCRAC | 3 cut(s) | 240, 540, 806 |
| MnlI | CCTC | 7 cut(s) | 23, 146, 256, 284, 302, 688, 709 |
| MroXI | GAANNNNTTC | 1 cut(s) | 298 |
| MseI | TTAA | 1 cut(s) | 690 |
| MslI | CAYNNNNRTG | 3 cut(s) | 171, 303, 645 |
| MspR9I | CCNGG | 1 cut(s) | 256 |
| Mva1269I | GAATGC | 1 cut(s) | 241 |
| MvaI | CCWGG | 1 cut(s) | 256 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 479, 562 |
| NdeI | CATATG | 1 cut(s) | 220 |
| NdeII | GATC | 3 cut(s) | 265, 392, 442 |
| NheI | GCTAGC | 1 cut(s) | 650 |
| NlaIII | CATG | 7 cut(s) | 50, 60, 193, 388, 428, 625, 778 |
| NlaIV | GGNNCC | 3 cut(s) | 34, 43, 213 |
| NmuCI | GTSAC | 1 cut(s) | 611 |
| NspI | RCATGY | 1 cut(s) | 60 |
| PagI | TCATGA | 1 cut(s) | 424 |
| PaqCI | CACCTGC | 1 cut(s) | 693 |
| PctI | GAATGC | 1 cut(s) | 241 |
| PdmI | GAANNNNTTC | 1 cut(s) | 298 |
| PfeI | GAWTC | 2 cut(s) | 99, 410 |
| PkrI | GCNGC | 1 cut(s) | 134 |
| PleI | GAGTC | 2 cut(s) | 424, 535 |
| PpsI | GAGTC | 2 cut(s) | 424, 535 |
| Psp6I | CCWGG | 1 cut(s) | 254 |
| PspGI | CCWGG | 1 cut(s) | 254 |
| PspN4I | GGNNCC | 3 cut(s) | 34, 43, 213 |
| PsuI | RGATCY | 2 cut(s) | 392, 442 |
| RsaI | GTAC | 2 cut(s) | 43, 712 |
| RsaNI | GTAC | 2 cut(s) | 42, 711 |
| RseI | CAYNNNNRTG | 3 cut(s) | 171, 303, 645 |
| SaqAI | TTAA | 1 cut(s) | 690 |
| SatI | GCNGC | 1 cut(s) | 133 |
| Sau3AI | GATC | 3 cut(s) | 265, 392, 442 |
| SchI | GAGTC | 2 cut(s) | 425, 535 |
| ScrFI | CCNGG | 1 cut(s) | 256 |
| SetI | ASST | 8 cut(s) | 34, 228, 343, 433, 475, 558, 699, 707 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 171, 303, 645 |
| SpeI | ACTAGT | 1 cut(s) | 170 |
| Sse9I | AATT | 5 cut(s) | 76, 107, 456, 517, 725 |
| SspMI | CTAG | 4 cut(s) | 171, 396, 474, 651 |
| StyD4I | CCNGG | 1 cut(s) | 254 |
| TaaI | ACNGT | 3 cut(s) | 491, 573, 736 |
| TaiI | ACGT | 1 cut(s) | 228 |
| TaqI | TCGA | 1 cut(s) | 316 |
| TasI | AATT | 5 cut(s) | 76, 107, 456, 517, 725 |
| TatI | WGTACW | 1 cut(s) | 710 |
| TfiI | GAWTC | 2 cut(s) | 99, 410 |
| Tru1I | TTAA | 1 cut(s) | 690 |
| Tru9I | TTAA | 1 cut(s) | 690 |
| TseFI | GTSAC | 1 cut(s) | 611 |
| TseI | GCWGC | 1 cut(s) | 132 |
| Tsp45I | GTSAC | 1 cut(s) | 611 |
| TspDTI | ATGAA | 4 cut(s) | 413, 441, 510, 638 |
| XapI | RAATTY | 1 cut(s) | 517 |
| XceI | RCATGY | 1 cut(s) | 60 |
| XmnI | GAANNNNTTC | 1 cut(s) | 298 |
| XspI | CTAG | 4 cut(s) | 171, 396, 474, 651 |