Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 164 |
| AccI | GTMKAC | 1 cut(s) | 479 |
| AciI | CCGC | 1 cut(s) | 217 |
| AclWI | GGATC | 1 cut(s) | 229 |
| AcoI | YGGCCR | 1 cut(s) | 342 |
| AflIII | ACRYGT | 1 cut(s) | 320 |
| AjnI | CCWGG | 1 cut(s) | 394 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 169, 201 |
| AluBI | AGCT | 1 cut(s) | 521 |
| AluI | AGCT | 1 cut(s) | 521 |
| Alw26I | GTCTC | 1 cut(s) | 342 |
| AlwI | GGATC | 1 cut(s) | 229 |
| AoxI | GGCC | 2 cut(s) | 247, 342 |
| ApeKI | GCWGC | 1 cut(s) | 401 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 446, 478 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 420, 549 |
| AspS9I | GGNCC | 2 cut(s) | 166, 389 |
| AsuHPI | GGTGA | 1 cut(s) | 58 |
| AsuII | TTCGAA | 1 cut(s) | 301 |
| AvaII | GGWCC | 2 cut(s) | 166, 389 |
| BanII | GRGCYC | 1 cut(s) | 128 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 463, 495 |
| BbvI | GCAGC | 1 cut(s) | 388 |
| BccI | CCATC | 2 cut(s) | 177, 406 |
| BciT130I | CCWGG | 1 cut(s) | 396 |
| BcoDI | GTCTC | 1 cut(s) | 342 |
| BfaI | CTAG | 3 cut(s) | 47, 56, 86 |
| BisI | GCNGC | 1 cut(s) | 402 |
| BlsI | GCNGC | 1 cut(s) | 403 |
| Bme1390I | CCNGG | 1 cut(s) | 396 |
| Bme18I | GGWCC | 2 cut(s) | 166, 389 |
| BmgT120I | GGNCC | 2 cut(s) | 166, 389 |
| BmiI | GGNNCC | 1 cut(s) | 293 |
| BmrFI | CCNGG | 1 cut(s) | 396 |
| BmrI | ACTGGG | 2 cut(s) | 447, 492 |
| BmsI | GCATC | 2 cut(s) | 272, 289 |
| BmuI | ACTGGG | 2 cut(s) | 447, 492 |
| BpmI | CTGGAG | 2 cut(s) | 385, 405 |
| Bpu14I | TTCGAA | 1 cut(s) | 301 |
| BsaJI | CCNNGG | 2 cut(s) | 332, 395 |
| BsaWI | WCCGGW | 1 cut(s) | 163 |
| Bse1I | ACTGG | 2 cut(s) | 442, 487 |
| BseBI | CCWGG | 1 cut(s) | 396 |
| BseDI | CCNNGG | 2 cut(s) | 332, 395 |
| BseMII | CTCAG | 1 cut(s) | 187 |
| BseNI | ACTGG | 2 cut(s) | 442, 487 |
| BseRI | GAGGAG | 1 cut(s) | 128 |
| BseXI | GCAGC | 1 cut(s) | 388 |
| BshFI | GGCC | 2 cut(s) | 249, 344 |
| BsiSI | CCGG | 2 cut(s) | 164, 345 |
| BsmAI | GTCTC | 1 cut(s) | 342 |
| BsmI | GAATGC | 1 cut(s) | 551 |
| BsnI | GGCC | 2 cut(s) | 249, 344 |
| Bsp119I | TTCGAA | 1 cut(s) | 301 |
| Bsp1286I | GDGCHC | 1 cut(s) | 128 |
| Bsp143I | GATC | 3 cut(s) | 58, 63, 221 |
| BspACI | CCGC | 1 cut(s) | 217 |
| BspANI | GGCC | 2 cut(s) | 249, 344 |
| BspCNI | CTCAG | 1 cut(s) | 186 |
| BspLI | GGNNCC | 1 cut(s) | 293 |
| BspPI | GGATC | 1 cut(s) | 229 |
| BspT104I | TTCGAA | 1 cut(s) | 301 |
| BsrI | ACTGG | 2 cut(s) | 442, 487 |
| BssECI | CCNNGG | 2 cut(s) | 332, 395 |
| BssMI | GATC | 3 cut(s) | 58, 63, 221 |
| BssNAI | GTATAC | 1 cut(s) | 480 |
| BssT1I | CCWWGG | 1 cut(s) | 332 |
| Bst1107I | GTATAC | 1 cut(s) | 480 |
| Bst2UI | CCWGG | 1 cut(s) | 396 |
| BstBI | TTCGAA | 1 cut(s) | 301 |
| BstC8I | GCNNGC | 1 cut(s) | 9 |
| BstDEI | CTNAG | 1 cut(s) | 173 |
| BstKTI | GATC | 3 cut(s) | 61, 66, 224 |
| BstMAI | GTCTC | 1 cut(s) | 342 |
| BstMBI | GATC | 3 cut(s) | 58, 63, 221 |
| BstNI | CCWGG | 1 cut(s) | 396 |
| BstNSI | RCATGY | 1 cut(s) | 324 |
| BstSCI | CCNGG | 1 cut(s) | 394 |
| BstV1I | GCAGC | 1 cut(s) | 388 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 412 |
| BstZ17I | GTATAC | 1 cut(s) | 480 |
| BsuRI | GGCC | 2 cut(s) | 249, 344 |
| Cac8I | GCNNGC | 1 cut(s) | 9 |
| Cfr13I | GGNCC | 2 cut(s) | 166, 389 |
| CviAII | CATG | 2 cut(s) | 321, 457 |
| CviJI | RGCY | 7 cut(s) | 126, 249, 337, 344, 401, 511, 521 |
| CviKI_1 | RGCY | 7 cut(s) | 126, 249, 337, 344, 401, 511, 521 |
| DdeI | CTNAG | 1 cut(s) | 173 |
| DpnI | GATC | 3 cut(s) | 60, 65, 223 |
| DpnII | GATC | 3 cut(s) | 58, 63, 221 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 164 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 164 |
| EaeI | YGGCCR | 1 cut(s) | 342 |
| Eco130I | CCWWGG | 1 cut(s) | 332 |
| Eco147I | AGGCCT | 1 cut(s) | 249 |
| Eco24I | GRGCYC | 1 cut(s) | 128 |
| Eco47I | GGWCC | 2 cut(s) | 166, 389 |
| EcoRII | CCWGG | 1 cut(s) | 394 |
| EcoT14I | CCWWGG | 1 cut(s) | 332 |
| EcoT22I | ATGCAT | 1 cut(s) | 537 |
| EcoT38I | GRGCYC | 1 cut(s) | 128 |
| ErhI | CCWWGG | 1 cut(s) | 332 |
| FaeI | CATG | 2 cut(s) | 324, 460 |
| FaiI | YATR | 9 cut(s) | 104, 106, 111, 322, 341, 458, 480, 533, 563 |
| FatI | CATG | 2 cut(s) | 320, 456 |
| FauI | CCCGC | 1 cut(s) | 210 |
| FblI | GTMKAC | 1 cut(s) | 479 |
| Fnu4HI | GCNGC | 1 cut(s) | 402 |
| FriOI | GRGCYC | 1 cut(s) | 128 |
| Fsp4HI | GCNGC | 1 cut(s) | 402 |
| FspBI | CTAG | 3 cut(s) | 47, 56, 86 |
| GluI | GCNGC | 1 cut(s) | 402 |
| GsuI | CTGGAG | 2 cut(s) | 385, 405 |
| HaeIII | GGCC | 2 cut(s) | 249, 344 |
| HapII | CCGG | 2 cut(s) | 164, 345 |
| Hin1II | CATG | 2 cut(s) | 324, 460 |
| HincII | GTYRAC | 1 cut(s) | 139 |
| HindII | GTYRAC | 1 cut(s) | 139 |
| HinfI | GANTC | 3 cut(s) | 135, 240, 298 |
| HpaII | CCGG | 2 cut(s) | 164, 345 |
| HphI | GGTGA | 1 cut(s) | 58 |
| Hpy166II | GTNNAC | 2 cut(s) | 139, 480 |
| Hpy188I | TCNGA | 2 cut(s) | 63, 176 |
| Hpy188III | TCNNGA | 4 cut(s) | 35, 148, 364, 384 |
| Hpy8I | GTNNAC | 2 cut(s) | 139, 480 |
| Hpy99I | CGWCG | 1 cut(s) | 429 |
| HpyAV | CCTTC | 2 cut(s) | 115, 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 287 |
| HpyCH4V | TGCA | 4 cut(s) | 7, 263, 489, 535 |
| HpyF3I | CTNAG | 1 cut(s) | 173 |
| HpySE526I | ACGT | 1 cut(s) | 287 |
| Hsp92II | CATG | 2 cut(s) | 324, 460 |
| Kzo9I | GATC | 3 cut(s) | 58, 63, 221 |
| LmnI | GCTCC | 1 cut(s) | 366 |
| Lsp1109I | GCAGC | 1 cut(s) | 388 |
| LweI | GCATC | 2 cut(s) | 272, 289 |
| MaeI | CTAG | 3 cut(s) | 47, 56, 86 |
| MaeII | ACGT | 1 cut(s) | 287 |
| MaeIII | GTNAC | 2 cut(s) | 323, 494 |
| MalI | GATC | 3 cut(s) | 60, 65, 223 |
| MboI | GATC | 3 cut(s) | 58, 63, 221 |
| MboII | GAAGA | 4 cut(s) | 19, 50, 130, 428 |
| MhlI | GDGCHC | 1 cut(s) | 128 |
| MlyI | GAGTC | 1 cut(s) | 144 |
| MmeI | TCCRAC | 2 cut(s) | 215, 448 |
| MnlI | CCTC | 5 cut(s) | 79, 88, 106, 198, 380 |
| Mph1103I | ATGCAT | 1 cut(s) | 537 |
| MroXI | GAANNNNTTC | 2 cut(s) | 420, 549 |
| MseI | TTAA | 1 cut(s) | 354 |
| MslI | CAYNNNNRTG | 1 cut(s) | 198 |
| MspI | CCGG | 2 cut(s) | 164, 345 |
| MspR9I | CCNGG | 1 cut(s) | 396 |
| Mva1269I | GAATGC | 1 cut(s) | 551 |
| MvaI | CCWGG | 1 cut(s) | 396 |
| NdeII | GATC | 3 cut(s) | 58, 63, 221 |
| NlaIII | CATG | 2 cut(s) | 324, 460 |
| NlaIV | GGNNCC | 1 cut(s) | 293 |
| NmuCI | GTSAC | 1 cut(s) | 323 |
| NsiI | ATGCAT | 1 cut(s) | 537 |
| NspI | RCATGY | 1 cut(s) | 324 |
| NspV | TTCGAA | 1 cut(s) | 301 |
| PceI | AGGCCT | 1 cut(s) | 249 |
| PciI | ACATGT | 1 cut(s) | 320 |
| PctI | GAATGC | 1 cut(s) | 551 |
| PdmI | GAANNNNTTC | 2 cut(s) | 420, 549 |
| PfeI | GAWTC | 2 cut(s) | 240, 298 |
| PkrI | GCNGC | 1 cut(s) | 403 |
| PleI | GAGTC | 1 cut(s) | 143 |
| PpsI | GAGTC | 1 cut(s) | 143 |
| PscI | ACATGT | 1 cut(s) | 320 |
| Psp6I | CCWGG | 1 cut(s) | 394 |
| PspGI | CCWGG | 1 cut(s) | 394 |
| PspN4I | GGNNCC | 1 cut(s) | 293 |
| PspPI | GGNCC | 2 cut(s) | 166, 389 |
| RseI | CAYNNNNRTG | 1 cut(s) | 198 |
| SaqAI | TTAA | 1 cut(s) | 354 |
| SatI | GCNGC | 1 cut(s) | 402 |
| Sau3AI | GATC | 3 cut(s) | 58, 63, 221 |
| Sau96I | GGNCC | 2 cut(s) | 166, 389 |
| SchI | GAGTC | 1 cut(s) | 144 |
| ScrFI | CCNGG | 1 cut(s) | 396 |
| SduI | GDGCHC | 1 cut(s) | 128 |
| SfaNI | GCATC | 2 cut(s) | 272, 289 |
| SfuI | TTCGAA | 1 cut(s) | 301 |
| SinI | GGWCC | 2 cut(s) | 166, 389 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 198 |
| SseBI | AGGCCT | 1 cut(s) | 249 |
| SsiI | CCGC | 1 cut(s) | 217 |
| SspMI | CTAG | 3 cut(s) | 47, 56, 86 |
| StuI | AGGCCT | 1 cut(s) | 249 |
| StyD4I | CCNGG | 1 cut(s) | 394 |
| StyI | CCWWGG | 1 cut(s) | 332 |
| TaiI | ACGT | 1 cut(s) | 290 |
| TaqI | TCGA | 3 cut(s) | 283, 301, 424 |
| TaqII | GACCGA | 1 cut(s) | 424 |
| TfiI | GAWTC | 2 cut(s) | 240, 298 |
| Tru1I | TTAA | 1 cut(s) | 354 |
| Tru9I | TTAA | 1 cut(s) | 354 |
| TseFI | GTSAC | 1 cut(s) | 323 |
| TseI | GCWGC | 1 cut(s) | 401 |
| Tsp45I | GTSAC | 1 cut(s) | 323 |
| TspDTI | ATGAA | 2 cut(s) | 372, 515 |
| VpaK11BI | GGWCC | 2 cut(s) | 166, 389 |
| XceI | RCATGY | 1 cut(s) | 324 |
| XmiI | GTMKAC | 1 cut(s) | 479 |
| XmnI | GAANNNNTTC | 2 cut(s) | 420, 549 |
| XspI | CTAG | 3 cut(s) | 47, 56, 86 |
| Zsp2I | ATGCAT | 1 cut(s) | 537 |