ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 281 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 408 |
| AccII | CGCG | 1 cut(s) | 388 |
| AciI | CCGC | 1 cut(s) | 388 |
| AcuI | CTGAAG | 1 cut(s) | 301 |
| AfaI | GTAC | 1 cut(s) | 126 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 387, 388, 408, 543 |
| AgsI | TTSAA | 2 cut(s) | 377, 508 |
| AjnI | CCWGG | 1 cut(s) | 81 |
| AluBI | AGCT | 2 cut(s) | 136, 215 |
| AluI | AGCT | 2 cut(s) | 136, 215 |
| Alw26I | GTCTC | 3 cut(s) | 289, 372, 417 |
| AoxI | GGCC | 4 cut(s) | 92, 303, 463, 579 |
| ApeKI | GCWGC | 2 cut(s) | 193, 338 |
| AspLEI | GCGC | 2 cut(s) | 315, 388 |
| AspS9I | GGNCC | 2 cut(s) | 79, 579 |
| AsuHPI | GGTGA | 1 cut(s) | 142 |
| AvaII | GGWCC | 1 cut(s) | 79 |
| BauI | CACGAG | 1 cut(s) | 471 |
| BbvI | GCAGC | 2 cut(s) | 205, 325 |
| BccI | CCATC | 3 cut(s) | 103, 155, 545 |
| BceAI | ACGGC | 2 cut(s) | 18, 495 |
| BciT130I | CCWGG | 1 cut(s) | 83 |
| BcoDI | GTCTC | 3 cut(s) | 289, 372, 417 |
| BfaI | CTAG | 4 cut(s) | 122, 342, 383, 491 |
| BfoI | RGCGCY | 1 cut(s) | 316 |
| BisI | GCNGC | 2 cut(s) | 194, 339 |
| BlsI | GCNGC | 2 cut(s) | 195, 340 |
| Bme1390I | CCNGG | 1 cut(s) | 83 |
| Bme18I | GGWCC | 1 cut(s) | 79 |
| BmgT120I | GGNCC | 2 cut(s) | 79, 579 |
| BmiI | GGNNCC | 1 cut(s) | 580 |
| BmrFI | CCNGG | 1 cut(s) | 83 |
| BmsI | GCATC | 1 cut(s) | 556 |
| BpmI | CTGGAG | 1 cut(s) | 441 |
| BsaAI | YACGTR | 2 cut(s) | 158, 363 |
| BsaBI | GATNNNNATC | 1 cut(s) | 354 |
| BsaI | GGTCTC | 1 cut(s) | 372 |
| BsaJI | CCNNGG | 3 cut(s) | 34, 407, 477 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 387, 388, 408, 543 |
| Bse1I | ACTGG | 1 cut(s) | 175 |
| Bse8I | GATNNNNATC | 1 cut(s) | 354 |
| BseBI | CCWGG | 1 cut(s) | 83 |
| BseDI | CCNNGG | 3 cut(s) | 34, 407, 477 |
| BseGI | GGATG | 2 cut(s) | 238, 547 |
| BseJI | GATNNNNATC | 1 cut(s) | 354 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 387, 388, 408, 543 |
| BseNI | ACTGG | 1 cut(s) | 175 |
| BseRI | GAGGAG | 2 cut(s) | 247, 360 |
| BseXI | GCAGC | 2 cut(s) | 205, 325 |
| Bsh1236I | CGCG | 1 cut(s) | 388 |
| BshFI | GGCC | 4 cut(s) | 94, 305, 465, 581 |
| BslFI | GGGAC | 1 cut(s) | 384 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 387, 388, 408, 543 |
| BsmAI | GTCTC | 3 cut(s) | 289, 372, 417 |
| BsmFI | GGGAC | 1 cut(s) | 384 |
| BsmI | GAATGC | 1 cut(s) | 301 |
| BsnI | GGCC | 4 cut(s) | 94, 305, 465, 581 |
| Bso31I | GGTCTC | 1 cut(s) | 372 |
| Bsp143I | GATC | 2 cut(s) | 349, 487 |
| BspACI | CCGC | 1 cut(s) | 388 |
| BspANI | GGCC | 4 cut(s) | 94, 305, 465, 581 |
| BspFNI | CGCG | 1 cut(s) | 388 |
| BspLI | GGNNCC | 1 cut(s) | 580 |
| BspTNI | GGTCTC | 1 cut(s) | 372 |
| BsrI | ACTGG | 1 cut(s) | 175 |
| BssECI | CCNNGG | 3 cut(s) | 34, 407, 477 |
| BssMI | GATC | 2 cut(s) | 349, 487 |
| BssSI | CACGAG | 1 cut(s) | 471 |
| BssT1I | CCWWGG | 1 cut(s) | 407 |
| Bst2BI | CACGAG | 1 cut(s) | 471 |
| Bst2UI | CCWGG | 1 cut(s) | 83 |
| BstBAI | YACGTR | 2 cut(s) | 158, 363 |
| BstDSI | CCRYGG | 2 cut(s) | 34, 477 |
| BstF5I | GGATG | 2 cut(s) | 238, 547 |
| BstFNI | CGCG | 1 cut(s) | 388 |
| BstH2I | RGCGCY | 1 cut(s) | 316 |
| BstHHI | GCGC | 2 cut(s) | 315, 388 |
| BstKTI | GATC | 2 cut(s) | 352, 490 |
| BstMAI | GTCTC | 3 cut(s) | 289, 372, 417 |
| BstMBI | GATC | 2 cut(s) | 349, 487 |
| BstNI | CCWGG | 1 cut(s) | 83 |
| BstSCI | CCNGG | 1 cut(s) | 81 |
| BstSNI | TACGTA | 1 cut(s) | 158 |
| BstUI | CGCG | 1 cut(s) | 388 |
| BstV1I | GCAGC | 2 cut(s) | 205, 325 |
| BsuRI | GGCC | 4 cut(s) | 94, 305, 465, 581 |
| BtgI | CCRYGG | 2 cut(s) | 34, 477 |
| BtsCI | GGATG | 2 cut(s) | 238, 547 |
| BtsIMutI | CAGTG | 1 cut(s) | 325 |
| CfoI | GCGC | 2 cut(s) | 315, 388 |
| Cfr13I | GGNCC | 2 cut(s) | 79, 579 |
| CseI | GACGC | 1 cut(s) | 566 |
| Csp6I | GTAC | 1 cut(s) | 125 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 442, 477 |
| CviQI | GTAC | 1 cut(s) | 125 |
| DpnI | GATC | 2 cut(s) | 351, 489 |
| DpnII | GATC | 2 cut(s) | 349, 487 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 281 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 281 |
| Eco105I | TACGTA | 1 cut(s) | 158 |
| Eco130I | CCWWGG | 1 cut(s) | 407 |
| Eco147I | AGGCCT | 1 cut(s) | 305 |
| Eco31I | GGTCTC | 1 cut(s) | 372 |
| Eco47I | GGWCC | 1 cut(s) | 79 |
| Eco57I | CTGAAG | 1 cut(s) | 301 |
| EcoO109I | RGGNCCY | 1 cut(s) | 579 |
| EcoRII | CCWGG | 1 cut(s) | 81 |
| EcoT14I | CCWWGG | 1 cut(s) | 407 |
| ErhI | CCWWGG | 1 cut(s) | 407 |
| FaqI | GGGAC | 1 cut(s) | 384 |
| FauI | CCCGC | 1 cut(s) | 381 |
| FauNDI | CATATG | 1 cut(s) | 179 |
| Fnu4HI | GCNGC | 2 cut(s) | 194, 339 |
| FokI | GGATG | 2 cut(s) | 245, 534 |
| Fsp4HI | GCNGC | 2 cut(s) | 194, 339 |
| FspBI | CTAG | 4 cut(s) | 122, 342, 383, 491 |
| GlaI | GCGC | 2 cut(s) | 314, 387 |
| GluI | GCNGC | 2 cut(s) | 194, 339 |
| GsuI | CTGGAG | 1 cut(s) | 441 |
| HaeII | RGCGCY | 1 cut(s) | 316 |
| HaeIII | GGCC | 4 cut(s) | 94, 305, 465, 581 |
| HgaI | GACGC | 1 cut(s) | 566 |
| HhaI | GCGC | 2 cut(s) | 315, 388 |
| Hin6I | GCGC | 2 cut(s) | 313, 386 |
| HinP1I | GCGC | 2 cut(s) | 313, 386 |
| HphI | GGTGA | 1 cut(s) | 142 |
| Hpy188I | TCNGA | 3 cut(s) | 115, 232, 289 |
| Hpy188III | TCNNGA | 1 cut(s) | 508 |
| HpyAV | CCTTC | 1 cut(s) | 232 |
| HpyCH4IV | ACGT | 3 cut(s) | 157, 276, 362 |
| HpyCH4V | TGCA | 2 cut(s) | 299, 529 |
| HpySE526I | ACGT | 3 cut(s) | 157, 276, 362 |
| HspAI | GCGC | 2 cut(s) | 313, 386 |
| Kzo9I | GATC | 2 cut(s) | 349, 487 |
| LpnPI | CCDG | 8 cut(s) | 68, 95, 156, 210, 287, 405, 444, 561 |
| Lsp1109I | GCAGC | 2 cut(s) | 205, 325 |
| LweI | GCATC | 1 cut(s) | 556 |
| MaeI | CTAG | 4 cut(s) | 122, 342, 383, 491 |
| MaeII | ACGT | 3 cut(s) | 157, 276, 362 |
| MalI | GATC | 2 cut(s) | 351, 489 |
| MboI | GATC | 2 cut(s) | 349, 487 |
| MluCI | AATT | 1 cut(s) | 394 |
| MnlI | CCTC | 5 cut(s) | 265, 268, 316, 338, 504 |
| MseI | TTAA | 2 cut(s) | 413, 429 |
| MspR9I | CCNGG | 1 cut(s) | 83 |
| Mva1269I | GAATGC | 1 cut(s) | 301 |
| MvaI | CCWGG | 1 cut(s) | 83 |
| MvnI | CGCG | 1 cut(s) | 388 |
| NdeI | CATATG | 1 cut(s) | 179 |
| NdeII | GATC | 2 cut(s) | 349, 487 |
| NlaIV | GGNNCC | 1 cut(s) | 580 |
| PceI | AGGCCT | 1 cut(s) | 305 |
| PctI | GAATGC | 1 cut(s) | 301 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 408 |
| PkrI | GCNGC | 2 cut(s) | 195, 340 |
| Ppu21I | YACGTR | 2 cut(s) | 158, 363 |
| Psp6I | CCWGG | 1 cut(s) | 81 |
| PspGI | CCWGG | 1 cut(s) | 81 |
| PspN4I | GGNNCC | 1 cut(s) | 580 |
| PspPI | GGNCC | 2 cut(s) | 79, 579 |
| RsaI | GTAC | 1 cut(s) | 126 |
| RsaNI | GTAC | 1 cut(s) | 125 |
| SaqAI | TTAA | 2 cut(s) | 413, 429 |
| SatI | GCNGC | 2 cut(s) | 194, 339 |
| Sau3AI | GATC | 2 cut(s) | 349, 487 |
| Sau96I | GGNCC | 2 cut(s) | 79, 579 |
| ScrFI | CCNGG | 1 cut(s) | 83 |
| SetI | ASST | 9 cut(s) | 138, 160, 211, 217, 243, 257, 279, 365, 409 |
| SfaNI | GCATC | 1 cut(s) | 556 |
| SinI | GGWCC | 1 cut(s) | 79 |
| SnaBI | TACGTA | 1 cut(s) | 158 |
| Sse9I | AATT | 1 cut(s) | 394 |
| SseBI | AGGCCT | 1 cut(s) | 305 |
| SsiI | CCGC | 1 cut(s) | 388 |
| SspMI | CTAG | 4 cut(s) | 122, 342, 383, 491 |
| StuI | AGGCCT | 1 cut(s) | 305 |
| StyD4I | CCNGG | 1 cut(s) | 81 |
| StyI | CCWWGG | 1 cut(s) | 407 |
| TaiI | ACGT | 3 cut(s) | 160, 279, 365 |
| TaqI | TCGA | 1 cut(s) | 540 |
| TasI | AATT | 1 cut(s) | 394 |
| TatI | WGTACW | 1 cut(s) | 124 |
| Tru1I | TTAA | 2 cut(s) | 413, 429 |
| Tru9I | TTAA | 2 cut(s) | 413, 429 |
| TscAI | CASTG | 1 cut(s) | 325 |
| TseI | GCWGC | 2 cut(s) | 193, 338 |
| TspDTI | ATGAA | 1 cut(s) | 447 |
| TspRI | CASTG | 1 cut(s) | 325 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 408 |
| VpaK11BI | GGWCC | 1 cut(s) | 79 |
| XspI | CTAG | 4 cut(s) | 122, 342, 383, 491 |