ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 251 |
| AciI | CCGC | 2 cut(s) | 157, 310 |
| AcoI | YGGCCR | 1 cut(s) | 84 |
| AfaI | GTAC | 2 cut(s) | 136, 342 |
| AfeI | AGCGCT | 1 cut(s) | 375 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 629 |
| AgsI | TTSAA | 3 cut(s) | 169, 281, 563 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 558, 590 |
| AluBI | AGCT | 2 cut(s) | 177, 682 |
| AluI | AGCT | 2 cut(s) | 177, 682 |
| Alw21I | GWGCWC | 1 cut(s) | 678 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 299 |
| Aor51HI | AGCGCT | 1 cut(s) | 375 |
| AoxI | GGCC | 4 cut(s) | 84, 362, 513, 548 |
| ApeKI | GCWGC | 1 cut(s) | 380 |
| AspLEI | GCGC | 3 cut(s) | 127, 252, 376 |
| AspS9I | GGNCC | 1 cut(s) | 362 |
| AsuHPI | GGTGA | 1 cut(s) | 460 |
| AsuII | TTCGAA | 1 cut(s) | 397 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 225, 258 |
| BalI | TGGCCA | 1 cut(s) | 86 |
| BanII | GRGCYC | 1 cut(s) | 67 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 324, 356, 436, 468 |
| BbsI | GAAGAC | 2 cut(s) | 545, 591 |
| Bbv12I | GWGCWC | 1 cut(s) | 678 |
| BbvI | GCAGC | 1 cut(s) | 367 |
| BccI | CCATC | 1 cut(s) | 564 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 665, 699 |
| BfaI | CTAG | 2 cut(s) | 68, 122 |
| BfmI | CTRYAG | 2 cut(s) | 31, 457 |
| BfoI | RGCGCY | 1 cut(s) | 377 |
| BisI | GCNGC | 1 cut(s) | 381 |
| BlsI | GCNGC | 1 cut(s) | 382 |
| BmcAI | AGTACT | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 362 |
| BmsI | GCATC | 1 cut(s) | 703 |
| BoxI | GACNNNNGTC | 1 cut(s) | 495 |
| BpiI | GAAGAC | 2 cut(s) | 545, 591 |
| BpmI | CTGGAG | 1 cut(s) | 553 |
| Bpu10I | CCTNAGC | 1 cut(s) | 593 |
| Bpu14I | TTCGAA | 1 cut(s) | 397 |
| Bsa29I | ATCGAT | 1 cut(s) | 141 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 629 |
| Bse1I | ACTGG | 1 cut(s) | 634 |
| BseCI | ATCGAT | 1 cut(s) | 141 |
| BseGI | GGATG | 1 cut(s) | 575 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 629 |
| BseMII | CTCAG | 5 cut(s) | 425, 436, 474, 487, 584 |
| BseNI | ACTGG | 1 cut(s) | 634 |
| BseXI | GCAGC | 1 cut(s) | 367 |
| BseYI | CCCAGC | 1 cut(s) | 57 |
| BshFI | GGCC | 4 cut(s) | 86, 364, 515, 550 |
| BshVI | ATCGAT | 1 cut(s) | 141 |
| BsiHKAI | GWGCWC | 1 cut(s) | 678 |
| BslFI | GGGAC | 2 cut(s) | 170, 222 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 629 |
| BsmFI | GGGAC | 2 cut(s) | 170, 222 |
| BsnI | GGCC | 4 cut(s) | 86, 364, 515, 550 |
| Bsp119I | TTCGAA | 1 cut(s) | 397 |
| Bsp1286I | GDGCHC | 2 cut(s) | 67, 678 |
| Bsp143I | GATC | 1 cut(s) | 301 |
| BspACI | CCGC | 2 cut(s) | 157, 310 |
| BspANI | GGCC | 4 cut(s) | 86, 364, 515, 550 |
| BspCNI | CTCAG | 5 cut(s) | 424, 435, 475, 486, 585 |
| BspDI | ATCGAT | 1 cut(s) | 141 |
| BspHI | TCATGA | 1 cut(s) | 49 |
| BspMAI | CTGCAG | 1 cut(s) | 35 |
| BspT104I | TTCGAA | 1 cut(s) | 397 |
| BsrI | ACTGG | 1 cut(s) | 634 |
| BssMI | GATC | 1 cut(s) | 301 |
| BstBI | TTCGAA | 1 cut(s) | 397 |
| BstC8I | GCNNGC | 2 cut(s) | 63, 378 |
| BstDEI | CTNAG | 5 cut(s) | 411, 422, 473, 483, 593 |
| BstF5I | GGATG | 1 cut(s) | 575 |
| BstH2I | RGCGCY | 1 cut(s) | 377 |
| BstHHI | GCGC | 3 cut(s) | 127, 252, 376 |
| BstKTI | GATC | 1 cut(s) | 304 |
| BstMBI | GATC | 1 cut(s) | 301 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 380 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 495 |
| BstSFI | CTRYAG | 2 cut(s) | 31, 457 |
| BstV1I | GCAGC | 1 cut(s) | 367 |
| BstV2I | GAAGAC | 2 cut(s) | 545, 591 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 376 |
| Bsu15I | ATCGAT | 1 cut(s) | 141 |
| BsuRI | GGCC | 4 cut(s) | 86, 364, 515, 550 |
| BsuTUI | ATCGAT | 1 cut(s) | 141 |
| BtgZI | GCGATG | 2 cut(s) | 398, 680 |
| BtsCI | GGATG | 1 cut(s) | 575 |
| BtsIMutI | CAGTG | 2 cut(s) | 419, 430 |
| Cac8I | GCNNGC | 2 cut(s) | 63, 378 |
| CaiI | CAGNNNCTG | 1 cut(s) | 299 |
| CciI | TCATGA | 1 cut(s) | 49 |
| CfoI | GCGC | 3 cut(s) | 127, 252, 376 |
| Cfr13I | GGNCC | 1 cut(s) | 362 |
| ClaI | ATCGAT | 1 cut(s) | 141 |
| CseI | GACGC | 1 cut(s) | 172 |
| Csp6I | GTAC | 2 cut(s) | 135, 341 |
| CviAII | CATG | 4 cut(s) | 50, 239, 337, 690 |
| CviQI | GTAC | 2 cut(s) | 135, 341 |
| DdeI | CTNAG | 5 cut(s) | 411, 422, 473, 483, 593 |
| DpnI | GATC | 1 cut(s) | 303 |
| DpnII | GATC | 1 cut(s) | 301 |
| EaeI | YGGCCR | 1 cut(s) | 84 |
| Eco24I | GRGCYC | 1 cut(s) | 67 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco47III | AGCGCT | 1 cut(s) | 375 |
| EcoO109I | RGGNCCY | 1 cut(s) | 362 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT38I | GRGCYC | 1 cut(s) | 67 |
| FaeI | CATG | 4 cut(s) | 53, 242, 340, 693 |
| FaiI | YATR | 9 cut(s) | 51, 83, 192, 240, 307, 338, 431, 602, 691 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 161, 193 |
| FaqI | GGGAC | 2 cut(s) | 170, 222 |
| FatI | CATG | 4 cut(s) | 49, 238, 336, 689 |
| Fnu4HI | GCNGC | 1 cut(s) | 381 |
| FokI | GGATG | 1 cut(s) | 582 |
| FriOI | GRGCYC | 1 cut(s) | 67 |
| Fsp4HI | GCNGC | 1 cut(s) | 381 |
| FspBI | CTAG | 2 cut(s) | 68, 122 |
| FspI | TGCGCA | 1 cut(s) | 251 |
| GlaI | GCGC | 3 cut(s) | 126, 251, 375 |
| GluI | GCNGC | 1 cut(s) | 381 |
| GsaI | CCCAGC | 1 cut(s) | 61 |
| GsuI | CTGGAG | 1 cut(s) | 553 |
| HaeII | RGCGCY | 1 cut(s) | 377 |
| HaeIII | GGCC | 4 cut(s) | 86, 364, 515, 550 |
| HgaI | GACGC | 1 cut(s) | 172 |
| HhaI | GCGC | 3 cut(s) | 127, 252, 376 |
| Hin1II | CATG | 4 cut(s) | 53, 242, 340, 693 |
| Hin6I | GCGC | 3 cut(s) | 125, 250, 374 |
| HinP1I | GCGC | 3 cut(s) | 125, 250, 374 |
| HindIII | AAGCTT | 1 cut(s) | 680 |
| HinfI | GANTC | 6 cut(s) | 143, 165, 210, 409, 420, 485 |
| HphI | GGTGA | 1 cut(s) | 460 |
| Hpy166II | GTNNAC | 3 cut(s) | 225, 315, 419 |
| Hpy188I | TCNGA | 3 cut(s) | 115, 484, 490 |
| Hpy188III | TCNNGA | 5 cut(s) | 25, 50, 347, 357, 532 |
| Hpy8I | GTNNAC | 3 cut(s) | 225, 315, 419 |
| HpyAV | CCTTC | 2 cut(s) | 489, 560 |
| HpyCH4IV | ACGT | 1 cut(s) | 343 |
| HpyCH4V | TGCA | 3 cut(s) | 33, 643, 689 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 380 |
| HpyF3I | CTNAG | 5 cut(s) | 411, 422, 473, 483, 593 |
| HpySE526I | ACGT | 1 cut(s) | 343 |
| Hsp92II | CATG | 4 cut(s) | 53, 242, 340, 693 |
| HspAI | GCGC | 3 cut(s) | 125, 250, 374 |
| Kzo9I | GATC | 1 cut(s) | 301 |
| LmnI | GCTCC | 1 cut(s) | 673 |
| Lsp1109I | GCAGC | 1 cut(s) | 367 |
| LweI | GCATC | 1 cut(s) | 703 |
| MaeI | CTAG | 2 cut(s) | 68, 122 |
| MaeII | ACGT | 1 cut(s) | 343 |
| MaeIII | GTNAC | 1 cut(s) | 466 |
| MalI | GATC | 1 cut(s) | 303 |
| MboI | GATC | 1 cut(s) | 301 |
| MboII | GAAGA | 5 cut(s) | 97, 411, 550, 575, 596 |
| MhlI | GDGCHC | 2 cut(s) | 67, 678 |
| MlsI | TGGCCA | 1 cut(s) | 86 |
| MluCI | AATT | 1 cut(s) | 648 |
| MluNI | TGGCCA | 1 cut(s) | 86 |
| MlyI | GAGTC | 4 cut(s) | 204, 403, 414, 494 |
| MmeI | TCCRAC | 1 cut(s) | 651 |
| MnlI | CCTC | 8 cut(s) | 29, 158, 198, 353, 375, 482, 505, 528 |
| Mox20I | TGGCCA | 1 cut(s) | 86 |
| MscI | TGGCCA | 1 cut(s) | 86 |
| MseI | TTAA | 4 cut(s) | 45, 327, 657, 708 |
| MslI | CAYNNNNRTG | 2 cut(s) | 243, 273 |
| Msp20I | TGGCCA | 1 cut(s) | 86 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 380 |
| NdeII | GATC | 1 cut(s) | 301 |
| NlaIII | CATG | 4 cut(s) | 53, 242, 340, 693 |
| NmuCI | GTSAC | 1 cut(s) | 466 |
| NsbI | TGCGCA | 1 cut(s) | 251 |
| NspV | TTCGAA | 1 cut(s) | 397 |
| PagI | TCATGA | 1 cut(s) | 49 |
| PfeI | GAWTC | 2 cut(s) | 143, 165 |
| PkrI | GCNGC | 1 cut(s) | 382 |
| PleI | GAGTC | 4 cut(s) | 204, 403, 414, 493 |
| PpsI | GAGTC | 4 cut(s) | 204, 403, 414, 493 |
| PshAI | GACNNNNGTC | 1 cut(s) | 495 |
| PspFI | CCCAGC | 1 cut(s) | 57 |
| PspPI | GGNCC | 1 cut(s) | 362 |
| PstI | CTGCAG | 1 cut(s) | 35 |
| PstNI | CAGNNNCTG | 1 cut(s) | 299 |
| RsaI | GTAC | 2 cut(s) | 136, 342 |
| RsaNI | GTAC | 2 cut(s) | 135, 341 |
| RseI | CAYNNNNRTG | 2 cut(s) | 243, 273 |
| SaqAI | TTAA | 4 cut(s) | 45, 327, 657, 708 |
| SatI | GCNGC | 1 cut(s) | 381 |
| Sau3AI | GATC | 1 cut(s) | 301 |
| Sau96I | GGNCC | 1 cut(s) | 362 |
| ScaI | AGTACT | 1 cut(s) | 136 |
| SchI | GAGTC | 4 cut(s) | 204, 403, 414, 494 |
| SduI | GDGCHC | 2 cut(s) | 67, 678 |
| SetI | ASST | 5 cut(s) | 97, 179, 346, 458, 684 |
| SfaNI | GCATC | 1 cut(s) | 703 |
| SfcI | CTRYAG | 2 cut(s) | 31, 457 |
| SfuI | TTCGAA | 1 cut(s) | 397 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 243, 273 |
| Sse9I | AATT | 1 cut(s) | 648 |
| SsiI | CCGC | 2 cut(s) | 157, 310 |
| SspMI | CTAG | 2 cut(s) | 68, 122 |
| TaiI | ACGT | 1 cut(s) | 346 |
| TaqI | TCGA | 2 cut(s) | 141, 397 |
| TasI | AATT | 1 cut(s) | 648 |
| TatI | WGTACW | 1 cut(s) | 134 |
| TfiI | GAWTC | 2 cut(s) | 143, 165 |
| Tru1I | TTAA | 4 cut(s) | 45, 327, 657, 708 |
| Tru9I | TTAA | 4 cut(s) | 45, 327, 657, 708 |
| TscAI | CASTG | 2 cut(s) | 419, 430 |
| TseFI | GTSAC | 1 cut(s) | 466 |
| TseI | GCWGC | 1 cut(s) | 380 |
| Tsp45I | GTSAC | 1 cut(s) | 466 |
| TspDTI | ATGAA | 3 cut(s) | 66, 427, 617 |
| TspGWI | ACGGA | 1 cut(s) | 489 |
| TspRI | CASTG | 2 cut(s) | 419, 430 |
| XspI | CTAG | 2 cut(s) | 68, 122 |
| ZrmI | AGTACT | 1 cut(s) | 136 |