ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 201 |
| AciI | CCGC | 2 cut(s) | 457, 494 |
| AclWI | GGATC | 4 cut(s) | 7, 20, 248, 393 |
| AcsI | RAATTY | 2 cut(s) | 513, 525 |
| AdeI | CACNNNGTG | 1 cut(s) | 232 |
| AfaI | GTAC | 1 cut(s) | 78 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 462, 549 |
| AflIII | ACRYGT | 1 cut(s) | 199 |
| AgsI | TTSAA | 2 cut(s) | 148, 291 |
| AjnI | CCWGG | 2 cut(s) | 228, 461 |
| AluBI | AGCT | 2 cut(s) | 116, 326 |
| AluI | AGCT | 2 cut(s) | 116, 326 |
| Alw21I | GWGCWC | 2 cut(s) | 228, 237 |
| Alw44I | GTGCAC | 1 cut(s) | 233 |
| AlwI | GGATC | 4 cut(s) | 7, 20, 248, 393 |
| AoxI | GGCC | 4 cut(s) | 89, 367, 487, 497 |
| ApaI | GGGCCC | 1 cut(s) | 501 |
| ApaLI | GTGCAC | 1 cut(s) | 233 |
| ApeKI | GCWGC | 1 cut(s) | 323 |
| ApoI | RAATTY | 2 cut(s) | 513, 525 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 298, 513 |
| AspS9I | GGNCC | 5 cut(s) | 368, 453, 488, 497, 498 |
| AsuHPI | GGTGA | 1 cut(s) | 461 |
| AvaII | GGWCC | 1 cut(s) | 453 |
| BaeGI | GKGCMC | 2 cut(s) | 237, 501 |
| BamHI | GGATCC | 1 cut(s) | 12 |
| BanII | GRGCYC | 1 cut(s) | 501 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 501, 533 |
| Bbv12I | GWGCWC | 2 cut(s) | 228, 237 |
| BbvI | GCAGC | 1 cut(s) | 335 |
| BccI | CCATC | 1 cut(s) | 194 |
| BciT130I | CCWGG | 2 cut(s) | 230, 463 |
| BclI | TGATCA | 1 cut(s) | 166 |
| BisI | GCNGC | 1 cut(s) | 324 |
| BlsI | GCNGC | 1 cut(s) | 325 |
| Bme1390I | CCNGG | 2 cut(s) | 230, 463 |
| Bme18I | GGWCC | 1 cut(s) | 453 |
| BmgT120I | GGNCC | 5 cut(s) | 368, 453, 488, 497, 498 |
| BmiI | GGNNCC | 4 cut(s) | 14, 455, 498, 499 |
| BmrFI | CCNGG | 2 cut(s) | 230, 463 |
| BmrI | ACTGGG | 1 cut(s) | 287 |
| BmsI | GCATC | 1 cut(s) | 201 |
| BmuI | ACTGGG | 1 cut(s) | 287 |
| Bsa29I | ATCGAT | 1 cut(s) | 138 |
| BsaJI | CCNNGG | 1 cut(s) | 461 |
| BsaWI | WCCGGW | 3 cut(s) | 9, 237, 256 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 462, 549 |
| Bse1I | ACTGG | 1 cut(s) | 282 |
| BseBI | CCWGG | 2 cut(s) | 230, 463 |
| BseCI | ATCGAT | 1 cut(s) | 138 |
| BseDI | CCNNGG | 1 cut(s) | 461 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 462, 549 |
| BseMII | CTCAG | 1 cut(s) | 60 |
| BseNI | ACTGG | 1 cut(s) | 282 |
| BseSI | GKGCMC | 2 cut(s) | 237, 501 |
| BseXI | GCAGC | 1 cut(s) | 335 |
| BsgI | GTGCAG | 1 cut(s) | 342 |
| Bsh1236I | CGCG | 1 cut(s) | 201 |
| BshFI | GGCC | 4 cut(s) | 91, 369, 489, 499 |
| BshVI | ATCGAT | 1 cut(s) | 138 |
| BsiHKAI | GWGCWC | 2 cut(s) | 228, 237 |
| BsiSI | CCGG | 3 cut(s) | 10, 238, 257 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 462, 549 |
| BsnI | GGCC | 4 cut(s) | 91, 369, 489, 499 |
| Bsp120I | GGGCCC | 1 cut(s) | 497 |
| Bsp1286I | GDGCHC | 3 cut(s) | 228, 237, 501 |
| Bsp143I | GATC | 5 cut(s) | 12, 135, 166, 240, 385 |
| BspACI | CCGC | 2 cut(s) | 457, 494 |
| BspANI | GGCC | 4 cut(s) | 91, 369, 489, 499 |
| BspCNI | CTCAG | 1 cut(s) | 59 |
| BspDI | ATCGAT | 1 cut(s) | 138 |
| BspFNI | CGCG | 1 cut(s) | 201 |
| BspLI | GGNNCC | 4 cut(s) | 14, 455, 498, 499 |
| BspPI | GGATC | 4 cut(s) | 7, 20, 248, 393 |
| BsrI | ACTGG | 1 cut(s) | 282 |
| BssECI | CCNNGG | 1 cut(s) | 461 |
| BssMI | GATC | 5 cut(s) | 12, 135, 166, 240, 385 |
| Bst2UI | CCWGG | 2 cut(s) | 230, 463 |
| Bst4CI | ACNGT | 1 cut(s) | 29 |
| Bst6I | CTCTTC | 2 cut(s) | 104, 478 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 232 |
| BstDEI | CTNAG | 3 cut(s) | 46, 396, 505 |
| BstFNI | CGCG | 1 cut(s) | 201 |
| BstKTI | GATC | 5 cut(s) | 15, 138, 169, 243, 388 |
| BstMBI | GATC | 5 cut(s) | 12, 135, 166, 240, 385 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 232, 329 |
| BstNI | CCWGG | 2 cut(s) | 230, 463 |
| BstSCI | CCNGG | 2 cut(s) | 228, 461 |
| BstSLI | GKGCMC | 2 cut(s) | 237, 501 |
| BstUI | CGCG | 1 cut(s) | 201 |
| BstV1I | GCAGC | 1 cut(s) | 335 |
| BstX2I | RGATCY | 1 cut(s) | 12 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 528 |
| BstYI | RGATCY | 1 cut(s) | 12 |
| Bsu15I | ATCGAT | 1 cut(s) | 138 |
| BsuRI | GGCC | 4 cut(s) | 91, 369, 489, 499 |
| BsuTUI | ATCGAT | 1 cut(s) | 138 |
| BtsIMutI | CAGTG | 1 cut(s) | 250 |
| Cfr13I | GGNCC | 5 cut(s) | 368, 453, 488, 497, 498 |
| ClaI | ATCGAT | 1 cut(s) | 138 |
| CseI | GACGC | 1 cut(s) | 190 |
| CsiI | ACCWGGT | 1 cut(s) | 228 |
| Csp6I | GTAC | 1 cut(s) | 77 |
| CviAII | CATG | 3 cut(s) | 170, 352, 378 |
| CviQI | GTAC | 1 cut(s) | 77 |
| DdeI | CTNAG | 3 cut(s) | 46, 396, 505 |
| DpnI | GATC | 5 cut(s) | 14, 137, 168, 242, 387 |
| DpnII | GATC | 5 cut(s) | 12, 135, 166, 240, 385 |
| DraIII | CACNNNGTG | 1 cut(s) | 232 |
| Eam1104I | CTCTTC | 2 cut(s) | 104, 478 |
| EarI | CTCTTC | 2 cut(s) | 104, 478 |
| Eco147I | AGGCCT | 1 cut(s) | 91 |
| Eco24I | GRGCYC | 1 cut(s) | 501 |
| Eco47I | GGWCC | 1 cut(s) | 453 |
| EcoO109I | RGGNCCY | 3 cut(s) | 453, 488, 497 |
| EcoRI | GAATTC | 1 cut(s) | 513 |
| EcoRII | CCWGG | 2 cut(s) | 228, 461 |
| EcoT38I | GRGCYC | 1 cut(s) | 501 |
| FaeI | CATG | 3 cut(s) | 173, 355, 381 |
| FaiI | YATR | 8 cut(s) | 171, 182, 266, 353, 379, 421, 443, 561 |
| FatI | CATG | 3 cut(s) | 169, 351, 377 |
| FauI | CCCGC | 2 cut(s) | 464, 487 |
| FbaI | TGATCA | 1 cut(s) | 166 |
| Fnu4HI | GCNGC | 1 cut(s) | 324 |
| FriOI | GRGCYC | 1 cut(s) | 501 |
| Fsp4HI | GCNGC | 1 cut(s) | 324 |
| GluI | GCNGC | 1 cut(s) | 324 |
| HaeIII | GGCC | 4 cut(s) | 91, 369, 489, 499 |
| HapII | CCGG | 3 cut(s) | 10, 238, 257 |
| HgaI | GACGC | 1 cut(s) | 190 |
| Hin1II | CATG | 3 cut(s) | 173, 355, 381 |
| HincII | GTYRAC | 1 cut(s) | 43 |
| HindII | GTYRAC | 1 cut(s) | 43 |
| HindIII | AAGCTT | 1 cut(s) | 114 |
| HinfI | GANTC | 3 cut(s) | 61, 96, 260 |
| HpaI | GTTAAC | 1 cut(s) | 43 |
| HpaII | CCGG | 3 cut(s) | 10, 238, 257 |
| HphI | GGTGA | 1 cut(s) | 461 |
| Hpy166II | GTNNAC | 3 cut(s) | 43, 235, 552 |
| Hpy188I | TCNGA | 2 cut(s) | 60, 393 |
| Hpy188III | TCNNGA | 1 cut(s) | 291 |
| Hpy8I | GTNNAC | 3 cut(s) | 43, 235, 552 |
| Hpy99I | CGWCG | 1 cut(s) | 60 |
| HpyAV | CCTTC | 2 cut(s) | 288, 503 |
| HpyCH4III | ACNGT | 1 cut(s) | 29 |
| HpyCH4V | TGCA | 2 cut(s) | 235, 323 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 232, 329 |
| HpyF3I | CTNAG | 3 cut(s) | 46, 396, 505 |
| Hsp92II | CATG | 3 cut(s) | 173, 355, 381 |
| Ksp22I | TGATCA | 1 cut(s) | 166 |
| KspAI | GTTAAC | 1 cut(s) | 43 |
| Kzo9I | GATC | 5 cut(s) | 12, 135, 166, 240, 385 |
| LmnI | GCTCC | 1 cut(s) | 223 |
| Lsp1109I | GCAGC | 1 cut(s) | 335 |
| LweI | GCATC | 1 cut(s) | 201 |
| MabI | ACCWGGT | 1 cut(s) | 228 |
| MaeIII | GTNAC | 2 cut(s) | 49, 202 |
| MalI | GATC | 5 cut(s) | 14, 137, 168, 242, 387 |
| MboI | GATC | 5 cut(s) | 12, 135, 166, 240, 385 |
| MboII | GAAGA | 3 cut(s) | 91, 166, 495 |
| MflI | RGATCY | 1 cut(s) | 12 |
| MhlI | GDGCHC | 3 cut(s) | 228, 237, 501 |
| MluCI | AATT | 3 cut(s) | 404, 513, 525 |
| MluI | ACGCGT | 1 cut(s) | 199 |
| MlyI | GAGTC | 1 cut(s) | 90 |
| MmeI | TCCRAC | 1 cut(s) | 38 |
| MnlI | CCTC | 5 cut(s) | 81, 102, 275, 439, 479 |
| MroXI | GAANNNNTTC | 2 cut(s) | 298, 513 |
| MseI | TTAA | 1 cut(s) | 42 |
| MslI | CAYNNNNRTG | 1 cut(s) | 209 |
| MspA1I | CMGCKG | 1 cut(s) | 326 |
| MspI | CCGG | 3 cut(s) | 10, 238, 257 |
| MspR9I | CCNGG | 2 cut(s) | 230, 463 |
| MvaI | CCWGG | 2 cut(s) | 230, 463 |
| MvnI | CGCG | 1 cut(s) | 201 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 232, 329 |
| NdeII | GATC | 5 cut(s) | 12, 135, 166, 240, 385 |
| NlaIII | CATG | 3 cut(s) | 173, 355, 381 |
| NlaIV | GGNNCC | 4 cut(s) | 14, 455, 498, 499 |
| NmuCI | GTSAC | 1 cut(s) | 202 |
| PceI | AGGCCT | 1 cut(s) | 91 |
| PdmI | GAANNNNTTC | 2 cut(s) | 298, 513 |
| PfeI | GAWTC | 2 cut(s) | 61, 260 |
| PkrI | GCNGC | 1 cut(s) | 325 |
| PleI | GAGTC | 1 cut(s) | 90 |
| PpsI | GAGTC | 1 cut(s) | 90 |
| PpuMI | RGGWCCY | 1 cut(s) | 453 |
| Psp5II | RGGWCCY | 1 cut(s) | 453 |
| Psp6I | CCWGG | 2 cut(s) | 228, 461 |
| PspGI | CCWGG | 2 cut(s) | 228, 461 |
| PspN4I | GGNNCC | 4 cut(s) | 14, 455, 498, 499 |
| PspOMI | GGGCCC | 1 cut(s) | 497 |
| PspPI | GGNCC | 5 cut(s) | 368, 453, 488, 497, 498 |
| PspPPI | RGGWCCY | 1 cut(s) | 453 |
| PsuI | RGATCY | 1 cut(s) | 12 |
| PvuII | CAGCTG | 1 cut(s) | 326 |
| RsaI | GTAC | 1 cut(s) | 78 |
| RsaNI | GTAC | 1 cut(s) | 77 |
| RseI | CAYNNNNRTG | 1 cut(s) | 209 |
| SaqAI | TTAA | 1 cut(s) | 42 |
| SatI | GCNGC | 1 cut(s) | 324 |
| Sau3AI | GATC | 5 cut(s) | 12, 135, 166, 240, 385 |
| Sau96I | GGNCC | 5 cut(s) | 368, 453, 488, 497, 498 |
| SchI | GAGTC | 1 cut(s) | 90 |
| ScrFI | CCNGG | 2 cut(s) | 230, 463 |
| SduI | GDGCHC | 3 cut(s) | 228, 237, 501 |
| SetI | ASST | 7 cut(s) | 118, 146, 234, 328, 467, 506, 567 |
| SexAI | ACCWGGT | 1 cut(s) | 228 |
| SfaNI | GCATC | 1 cut(s) | 201 |
| SinI | GGWCC | 1 cut(s) | 453 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 209 |
| Sse9I | AATT | 3 cut(s) | 404, 513, 525 |
| SseBI | AGGCCT | 1 cut(s) | 91 |
| SsiI | CCGC | 2 cut(s) | 457, 494 |
| StuI | AGGCCT | 1 cut(s) | 91 |
| StyD4I | CCNGG | 2 cut(s) | 228, 461 |
| TaaI | ACNGT | 1 cut(s) | 29 |
| TaqI | TCGA | 2 cut(s) | 94, 138 |
| TasI | AATT | 3 cut(s) | 404, 513, 525 |
| TfiI | GAWTC | 2 cut(s) | 61, 260 |
| Tru1I | TTAA | 1 cut(s) | 42 |
| Tru9I | TTAA | 1 cut(s) | 42 |
| TscAI | CASTG | 1 cut(s) | 250 |
| TseFI | GTSAC | 1 cut(s) | 202 |
| TseI | GCWGC | 1 cut(s) | 323 |
| Tsp45I | GTSAC | 1 cut(s) | 202 |
| TspDTI | ATGAA | 4 cut(s) | 169, 323, 330, 362 |
| TspRI | CASTG | 1 cut(s) | 250 |
| VneI | GTGCAC | 1 cut(s) | 233 |
| VpaK11BI | GGWCC | 1 cut(s) | 453 |
| XapI | RAATTY | 2 cut(s) | 513, 525 |
| XmnI | GAANNNNTTC | 2 cut(s) | 298, 513 |