Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 862 |
| Acc36I | ACCTGC | 1 cut(s) | 862 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1055 |
| AccI | GTMKAC | 1 cut(s) | 800 |
| AciI | CCGC | 2 cut(s) | 306, 1080 |
| AclI | AACGTT | 1 cut(s) | 202 |
| AclWI | GGATC | 2 cut(s) | 699, 921 |
| AcsI | RAATTY | 1 cut(s) | 869 |
| AcuI | CTGAAG | 2 cut(s) | 286, 1054 |
| AcvI | CACGTG | 1 cut(s) | 884 |
| AdeI | CACNNNGTG | 1 cut(s) | 586 |
| AfaI | GTAC | 2 cut(s) | 850, 939 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 22, 227, 296, 547, 552, 671, 714, 1055 |
| AflIII | ACRYGT | 2 cut(s) | 180, 883 |
| AgsI | TTSAA | 6 cut(s) | 200, 400, 413, 517, 754, 989 |
| AjnI | CCWGG | 3 cut(s) | 803, 857, 952 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 140, 172, 815, 847 |
| AleI | CACNNNNGTG | 1 cut(s) | 1025 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 626, 658 |
| AluBI | AGCT | 4 cut(s) | 67, 730, 788, 1074 |
| AluI | AGCT | 4 cut(s) | 67, 730, 788, 1074 |
| Alw26I | GTCTC | 6 cut(s) | 17, 83, 146, 434, 440, 480 |
| AlwI | GGATC | 2 cut(s) | 699, 921 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 478, 788 |
| AoxI | GGCC | 3 cut(s) | 538, 673, 711 |
| ApeKI | GCWGC | 2 cut(s) | 617, 949 |
| ApoI | RAATTY | 1 cut(s) | 869 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 82, 114, 145, 177 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 966 |
| AspA2I | CCTAGG | 1 cut(s) | 251 |
| AspS9I | GGNCC | 4 cut(s) | 384, 538, 712, 1059 |
| AsuC2I | CCSGG | 3 cut(s) | 17, 649, 715 |
| AsuHPI | GGTGA | 3 cut(s) | 128, 637, 737 |
| AsuII | TTCGAA | 1 cut(s) | 815 |
| AvaII | GGWCC | 2 cut(s) | 384, 1059 |
| AvrII | CCTAGG | 1 cut(s) | 251 |
| BaeGI | GKGCMC | 1 cut(s) | 845 |
| BbrPI | CACGTG | 1 cut(s) | 884 |
| BbvI | GCAGC | 2 cut(s) | 629, 961 |
| BccI | CCATC | 4 cut(s) | 137, 328, 572, 906 |
| BceAI | ACGGC | 1 cut(s) | 274 |
| BciT130I | CCWGG | 3 cut(s) | 805, 859, 954 |
| BclI | TGATCA | 1 cut(s) | 888 |
| BcnI | CCSGG | 3 cut(s) | 17, 649, 715 |
| BcoDI | GTCTC | 6 cut(s) | 17, 83, 146, 434, 440, 480 |
| BfaI | CTAG | 4 cut(s) | 252, 264, 903, 1096 |
| BfmI | CTRYAG | 1 cut(s) | 282 |
| BfuAI | ACCTGC | 1 cut(s) | 862 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1011 |
| BisI | GCNGC | 3 cut(s) | 618, 950, 1080 |
| BlnI | CCTAGG | 1 cut(s) | 251 |
| BlsI | GCNGC | 3 cut(s) | 619, 951, 1081 |
| Bme1390I | CCNGG | 6 cut(s) | 17, 649, 715, 805, 859, 954 |
| Bme18I | GGWCC | 2 cut(s) | 384, 1059 |
| BmgT120I | GGNCC | 4 cut(s) | 384, 538, 712, 1059 |
| BmiI | GGNNCC | 4 cut(s) | 249, 539, 1060, 1061 |
| BmrFI | CCNGG | 6 cut(s) | 17, 649, 715, 805, 859, 954 |
| BmsI | GCATC | 2 cut(s) | 393, 427 |
| BpmI | CTGGAG | 1 cut(s) | 810 |
| Bpu14I | TTCGAA | 1 cut(s) | 815 |
| BpuMI | CCSGG | 3 cut(s) | 17, 649, 715 |
| BsaAI | YACGTR | 2 cut(s) | 884, 941 |
| BsaI | GGTCTC | 2 cut(s) | 17, 146 |
| BsaJI | CCNNGG | 4 cut(s) | 156, 251, 546, 708 |
| BsaWI | WCCGGW | 1 cut(s) | 94 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 17, 47, 239, 269 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 22, 227, 296, 547, 552, 671, 714, 1055 |
| Bse1I | ACTGG | 1 cut(s) | 274 |
| BseBI | CCWGG | 3 cut(s) | 805, 859, 954 |
| BseDI | CCNNGG | 4 cut(s) | 156, 251, 546, 708 |
| BseGI | GGATG | 6 cut(s) | 85, 148, 562, 661, 898, 1036 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 22, 227, 296, 547, 552, 671, 714, 1055 |
| BseMII | CTCAG | 1 cut(s) | 454 |
| BseNI | ACTGG | 1 cut(s) | 274 |
| BseRI | GAGGAG | 2 cut(s) | 38, 68 |
| BseSI | GKGCMC | 1 cut(s) | 845 |
| BseXI | GCAGC | 2 cut(s) | 629, 961 |
| BseYI | CCCAGC | 1 cut(s) | 743 |
| BsgI | GTGCAG | 1 cut(s) | 439 |
| Bsh1285I | CGRYCG | 1 cut(s) | 911 |
| BshFI | GGCC | 3 cut(s) | 540, 675, 713 |
| BsiEI | CGRYCG | 1 cut(s) | 911 |
| BsiSI | CCGG | 4 cut(s) | 17, 95, 648, 715 |
| BslFI | GGGAC | 3 cut(s) | 707, 905, 1072 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 22, 227, 296, 547, 552, 671, 714, 1055 |
| BsmAI | GTCTC | 6 cut(s) | 17, 83, 146, 434, 440, 480 |
| BsmFI | GGGAC | 3 cut(s) | 707, 905, 1072 |
| BsnI | GGCC | 3 cut(s) | 540, 675, 713 |
| Bso31I | GGTCTC | 2 cut(s) | 17, 146 |
| Bsp119I | TTCGAA | 1 cut(s) | 815 |
| Bsp1286I | GDGCHC | 1 cut(s) | 845 |
| Bsp1407I | TGTACA | 1 cut(s) | 848 |
| Bsp143I | GATC | 5 cut(s) | 530, 704, 888, 908, 913 |
| BspACI | CCGC | 2 cut(s) | 306, 1080 |
| BspANI | GGCC | 3 cut(s) | 540, 675, 713 |
| BspCNI | CTCAG | 1 cut(s) | 453 |
| BspLI | GGNNCC | 4 cut(s) | 249, 539, 1060, 1061 |
| BspMI | ACCTGC | 1 cut(s) | 862 |
| BspPI | GGATC | 2 cut(s) | 699, 921 |
| BspQI | GCTCTTC | 1 cut(s) | 226 |
| BspT104I | TTCGAA | 1 cut(s) | 815 |
| BspTNI | GGTCTC | 2 cut(s) | 17, 146 |
| BsrGI | TGTACA | 1 cut(s) | 848 |
| BsrI | ACTGG | 1 cut(s) | 274 |
| BssECI | CCNNGG | 4 cut(s) | 156, 251, 546, 708 |
| BssMI | GATC | 5 cut(s) | 530, 704, 888, 908, 913 |
| BssNAI | GTATAC | 1 cut(s) | 801 |
| BssT1I | CCWWGG | 4 cut(s) | 156, 251, 546, 708 |
| Bst1107I | GTATAC | 1 cut(s) | 801 |
| Bst2UI | CCWGG | 3 cut(s) | 805, 859, 954 |
| Bst4CI | ACNGT | 3 cut(s) | 116, 362, 798 |
| Bst6I | CTCTTC | 3 cut(s) | 15, 226, 984 |
| BstAUI | TGTACA | 1 cut(s) | 848 |
| BstBAI | YACGTR | 2 cut(s) | 884, 941 |
| BstBI | TTCGAA | 1 cut(s) | 815 |
| BstC8I | GCNNGC | 1 cut(s) | 298 |
| BstDEI | CTNAG | 1 cut(s) | 440 |
| BstEII | GGTNACC | 1 cut(s) | 116 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 225, 669 |
| BstF5I | GGATG | 6 cut(s) | 85, 148, 562, 661, 898, 1036 |
| BstKTI | GATC | 5 cut(s) | 533, 707, 891, 911, 916 |
| BstMAI | GTCTC | 6 cut(s) | 17, 83, 146, 434, 440, 480 |
| BstMBI | GATC | 5 cut(s) | 530, 704, 888, 908, 913 |
| BstMCI | CGRYCG | 1 cut(s) | 911 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1011 |
| BstNI | CCWGG | 3 cut(s) | 805, 859, 954 |
| BstNSI | RCATGY | 2 cut(s) | 184, 395 |
| BstPI | GGTNACC | 1 cut(s) | 116 |
| BstSCI | CCNGG | 6 cut(s) | 15, 647, 713, 803, 857, 952 |
| BstSFI | CTRYAG | 1 cut(s) | 282 |
| BstSLI | GKGCMC | 1 cut(s) | 845 |
| BstSNI | TACGTA | 1 cut(s) | 941 |
| BstV1I | GCAGC | 2 cut(s) | 629, 961 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 631, 1027 |
| BstZ17I | GTATAC | 1 cut(s) | 801 |
| BsuRI | GGCC | 3 cut(s) | 540, 675, 713 |
| BtsCI | GGATG | 6 cut(s) | 85, 148, 562, 661, 898, 1036 |
| BtsI | GCAGTG | 1 cut(s) | 451 |
| BtsIMutI | CAGTG | 2 cut(s) | 448, 451 |
| BveI | ACCTGC | 1 cut(s) | 862 |
| Cac8I | GCNNGC | 1 cut(s) | 298 |
| CaiI | CAGNNNCTG | 2 cut(s) | 478, 788 |
| Cfr13I | GGNCC | 4 cut(s) | 384, 538, 712, 1059 |
| CsiI | ACCWGGT | 1 cut(s) | 803 |
| Csp6I | GTAC | 2 cut(s) | 849, 938 |
| CviAII | CATG | 6 cut(s) | 181, 392, 917, 959, 1007, 1065 |
| CviQI | GTAC | 2 cut(s) | 849, 938 |
| DdeI | CTNAG | 1 cut(s) | 440 |
| DpnI | GATC | 5 cut(s) | 532, 706, 890, 910, 915 |
| DpnII | GATC | 5 cut(s) | 530, 704, 888, 908, 913 |
| DraIII | CACNNNGTG | 1 cut(s) | 586 |
| Eam1104I | CTCTTC | 3 cut(s) | 15, 226, 984 |
| EarI | CTCTTC | 3 cut(s) | 15, 226, 984 |
| Eco105I | TACGTA | 1 cut(s) | 941 |
| Eco130I | CCWWGG | 4 cut(s) | 156, 251, 546, 708 |
| Eco31I | GGTCTC | 2 cut(s) | 17, 146 |
| Eco47I | GGWCC | 2 cut(s) | 384, 1059 |
| Eco57I | CTGAAG | 2 cut(s) | 286, 1054 |
| Eco72I | CACGTG | 1 cut(s) | 884 |
| Eco91I | GGTNACC | 1 cut(s) | 116 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 225, 669 |
| EcoO109I | RGGNCCY | 2 cut(s) | 538, 1059 |
| EcoO65I | GGTNACC | 1 cut(s) | 116 |
| EcoRII | CCWGG | 3 cut(s) | 803, 857, 952 |
| EcoT14I | CCWWGG | 4 cut(s) | 156, 251, 546, 708 |
| ErhI | CCWWGG | 4 cut(s) | 156, 251, 546, 708 |
| FaeI | CATG | 6 cut(s) | 184, 395, 920, 962, 1010, 1068 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 140, 172 |
| FaqI | GGGAC | 3 cut(s) | 707, 905, 1072 |
| FatI | CATG | 6 cut(s) | 180, 391, 916, 958, 1006, 1064 |
| FauI | CCCGC | 1 cut(s) | 299 |
| FauNDI | CATATG | 1 cut(s) | 1051 |
| FbaI | TGATCA | 1 cut(s) | 888 |
| FblI | GTMKAC | 1 cut(s) | 800 |
| Fnu4HI | GCNGC | 3 cut(s) | 618, 950, 1080 |
| FokI | GGATG | 6 cut(s) | 92, 155, 569, 648, 885, 1043 |
| Fsp4HI | GCNGC | 3 cut(s) | 618, 950, 1080 |
| FspBI | CTAG | 4 cut(s) | 252, 264, 903, 1096 |
| GluI | GCNGC | 3 cut(s) | 618, 950, 1080 |
| GsaI | CCCAGC | 1 cut(s) | 747 |
| GsuI | CTGGAG | 1 cut(s) | 810 |
| HaeIII | GGCC | 3 cut(s) | 540, 675, 713 |
| HapII | CCGG | 4 cut(s) | 17, 95, 648, 715 |
| Hin1II | CATG | 6 cut(s) | 184, 395, 920, 962, 1010, 1068 |
| HinfI | GANTC | 6 cut(s) | 91, 131, 448, 560, 718, 812 |
| HpaII | CCGG | 4 cut(s) | 17, 95, 648, 715 |
| HphI | GGTGA | 3 cut(s) | 128, 637, 737 |
| Hpy166II | GTNNAC | 4 cut(s) | 580, 645, 801, 851 |
| Hpy188I | TCNGA | 3 cut(s) | 247, 868, 913 |
| Hpy188III | TCNNGA | 3 cut(s) | 581, 665, 783 |
| Hpy8I | GTNNAC | 4 cut(s) | 580, 645, 801, 851 |
| Hpy99I | CGWCG | 1 cut(s) | 295 |
| HpyAV | CCTTC | 3 cut(s) | 79, 142, 1004 |
| HpyCH4III | ACNGT | 3 cut(s) | 116, 362, 798 |
| HpyCH4IV | ACGT | 4 cut(s) | 202, 679, 883, 940 |
| HpyCH4V | TGCA | 1 cut(s) | 456 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1011 |
| HpyF3I | CTNAG | 1 cut(s) | 440 |
| HpySE526I | ACGT | 4 cut(s) | 202, 679, 883, 940 |
| Hsp92II | CATG | 6 cut(s) | 184, 395, 920, 962, 1010, 1068 |
| KflI | GGGWCCC | 1 cut(s) | 1059 |
| Ksp22I | TGATCA | 1 cut(s) | 888 |
| Kzo9I | GATC | 5 cut(s) | 530, 704, 888, 908, 913 |
| LguI | GCTCTTC | 1 cut(s) | 226 |
| LmnI | GCTCC | 3 cut(s) | 247, 785, 946 |
| Lsp1109I | GCAGC | 2 cut(s) | 629, 961 |
| LweI | GCATC | 2 cut(s) | 393, 427 |
| MabI | ACCWGGT | 1 cut(s) | 803 |
| MaeI | CTAG | 4 cut(s) | 252, 264, 903, 1096 |
| MaeII | ACGT | 4 cut(s) | 202, 679, 883, 940 |
| MaeIII | GTNAC | 2 cut(s) | 116, 699 |
| MalI | GATC | 5 cut(s) | 532, 706, 890, 910, 915 |
| MboI | GATC | 5 cut(s) | 530, 704, 888, 908, 913 |
| MboII | GAAGA | 4 cut(s) | 32, 243, 412, 1001 |
| MhlI | GDGCHC | 1 cut(s) | 845 |
| MluCI | AATT | 4 cut(s) | 5, 195, 869, 977 |
| MlyI | GAGTC | 4 cut(s) | 85, 140, 442, 554 |
| MmeI | TCCRAC | 1 cut(s) | 813 |
| MroXI | GAANNNNTTC | 1 cut(s) | 966 |
| MseI | TTAA | 3 cut(s) | 69, 375, 1088 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1025 |
| MspA1I | CMGCKG | 1 cut(s) | 306 |
| MspI | CCGG | 4 cut(s) | 17, 95, 648, 715 |
| MspR9I | CCNGG | 6 cut(s) | 17, 649, 715, 805, 859, 954 |
| MvaI | CCWGG | 3 cut(s) | 805, 859, 954 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1011 |
| NciI | CCSGG | 3 cut(s) | 17, 649, 715 |
| NdeI | CATATG | 1 cut(s) | 1051 |
| NdeII | GATC | 5 cut(s) | 530, 704, 888, 908, 913 |
| NlaIII | CATG | 6 cut(s) | 184, 395, 920, 962, 1010, 1068 |
| NlaIV | GGNNCC | 4 cut(s) | 249, 539, 1060, 1061 |
| NmuCI | GTSAC | 1 cut(s) | 116 |
| NspI | RCATGY | 2 cut(s) | 184, 395 |
| NspV | TTCGAA | 1 cut(s) | 815 |
| OliI | CACNNNNGTG | 1 cut(s) | 1025 |
| PaqCI | CACCTGC | 1 cut(s) | 862 |
| PciI | ACATGT | 1 cut(s) | 180 |
| PciSI | GCTCTTC | 1 cut(s) | 226 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 199 |
| PdmI | GAANNNNTTC | 1 cut(s) | 966 |
| PfeI | GAWTC | 2 cut(s) | 718, 812 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1055 |
| PfoI | TCCNGGA | 1 cut(s) | 15 |
| PkrI | GCNGC | 3 cut(s) | 619, 951, 1081 |
| Ple19I | CGATCG | 1 cut(s) | 911 |
| PleI | GAGTC | 4 cut(s) | 85, 139, 442, 554 |
| PmaCI | CACGTG | 1 cut(s) | 884 |
| PmlI | CACGTG | 1 cut(s) | 884 |
| PpsI | GAGTC | 4 cut(s) | 85, 139, 442, 554 |
| Ppu21I | YACGTR | 2 cut(s) | 884, 941 |
| PpuMI | RGGWCCY | 1 cut(s) | 1059 |
| PscI | ACATGT | 1 cut(s) | 180 |
| Psp1406I | AACGTT | 1 cut(s) | 202 |
| Psp5II | RGGWCCY | 1 cut(s) | 1059 |
| Psp6I | CCWGG | 3 cut(s) | 803, 857, 952 |
| PspCI | CACGTG | 1 cut(s) | 884 |
| PspEI | GGTNACC | 1 cut(s) | 116 |
| PspFI | CCCAGC | 1 cut(s) | 743 |
| PspGI | CCWGG | 3 cut(s) | 803, 857, 952 |
| PspN4I | GGNNCC | 4 cut(s) | 249, 539, 1060, 1061 |
| PspPI | GGNCC | 4 cut(s) | 384, 538, 712, 1059 |
| PspPPI | RGGWCCY | 1 cut(s) | 1059 |
| PstNI | CAGNNNCTG | 2 cut(s) | 478, 788 |
| PvuI | CGATCG | 1 cut(s) | 911 |
| RsaI | GTAC | 2 cut(s) | 850, 939 |
| RsaNI | GTAC | 2 cut(s) | 849, 938 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1025 |
| SapI | GCTCTTC | 1 cut(s) | 226 |
| SaqAI | TTAA | 3 cut(s) | 69, 375, 1088 |
| SatI | GCNGC | 3 cut(s) | 618, 950, 1080 |
| Sau3AI | GATC | 5 cut(s) | 530, 704, 888, 908, 913 |
| Sau96I | GGNCC | 4 cut(s) | 384, 538, 712, 1059 |
| SchI | GAGTC | 4 cut(s) | 85, 140, 442, 554 |
| ScrFI | CCNGG | 6 cut(s) | 17, 649, 715, 805, 859, 954 |
| SduI | GDGCHC | 1 cut(s) | 845 |
| SexAI | ACCWGGT | 1 cut(s) | 803 |
| SfaNI | GCATC | 2 cut(s) | 393, 427 |
| SfcI | CTRYAG | 1 cut(s) | 282 |
| SfuI | TTCGAA | 1 cut(s) | 815 |
| SinI | GGWCC | 2 cut(s) | 384, 1059 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1025 |
| SnaBI | TACGTA | 1 cut(s) | 941 |
| Sse9I | AATT | 4 cut(s) | 5, 195, 869, 977 |
| SsiI | CCGC | 2 cut(s) | 306, 1080 |
| SspMI | CTAG | 4 cut(s) | 252, 264, 903, 1096 |
| StyD4I | CCNGG | 6 cut(s) | 15, 647, 713, 803, 857, 952 |
| StyI | CCWWGG | 4 cut(s) | 156, 251, 546, 708 |
| TaaI | ACNGT | 3 cut(s) | 116, 362, 798 |
| TaiI | ACGT | 4 cut(s) | 205, 682, 886, 943 |
| TaqI | TCGA | 3 cut(s) | 815, 907, 970 |
| TasI | AATT | 4 cut(s) | 5, 195, 869, 977 |
| TatI | WGTACW | 1 cut(s) | 848 |
| TauI | GCSGC | 1 cut(s) | 1082 |
| TfiI | GAWTC | 2 cut(s) | 718, 812 |
| Tru1I | TTAA | 3 cut(s) | 69, 375, 1088 |
| Tru9I | TTAA | 3 cut(s) | 69, 375, 1088 |
| TscAI | CASTG | 2 cut(s) | 448, 458 |
| TseFI | GTSAC | 1 cut(s) | 116 |
| TseI | GCWGC | 2 cut(s) | 617, 949 |
| Tsp45I | GTSAC | 1 cut(s) | 116 |
| TspDTI | ATGAA | 3 cut(s) | 356, 975, 1023 |
| TspRI | CASTG | 2 cut(s) | 448, 458 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1055 |
| VpaK11BI | GGWCC | 2 cut(s) | 384, 1059 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 225, 669 |
| XapI | RAATTY | 1 cut(s) | 869 |
| XceI | RCATGY | 2 cut(s) | 184, 395 |
| XmaJI | CCTAGG | 1 cut(s) | 251 |
| XmiI | GTMKAC | 1 cut(s) | 800 |
| XmnI | GAANNNNTTC | 1 cut(s) | 966 |
| XspI | CTAG | 4 cut(s) | 252, 264, 903, 1096 |