ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 361 |
| AccB1I | GGYRCC | 3 cut(s) | 266, 528, 742 |
| AccII | CGCG | 1 cut(s) | 705 |
| AciI | CCGC | 4 cut(s) | 320, 332, 560, 1001 |
| AclWI | GGATC | 2 cut(s) | 788, 907 |
| AcoI | YGGCCR | 3 cut(s) | 3, 300, 571 |
| AcsI | RAATTY | 1 cut(s) | 217 |
| AcuI | CTGAAG | 1 cut(s) | 752 |
| AcyI | GRCGYC | 1 cut(s) | 743 |
| AfaI | GTAC | 3 cut(s) | 39, 490, 640 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 444, 726, 836, 886, 971 |
| AgsI | TTSAA | 9 cut(s) | 79, 191, 226, 611, 769, 958, 1023, 1040, 1218 |
| AjnI | CCWGG | 5 cut(s) | 257, 297, 307, 834, 940 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 31 |
| AluBI | AGCT | 5 cut(s) | 106, 618, 689, 1030, 1054 |
| AluI | AGCT | 5 cut(s) | 106, 618, 689, 1030, 1054 |
| Alw26I | GTCTC | 2 cut(s) | 165, 898 |
| AlwI | GGATC | 2 cut(s) | 788, 907 |
| AoxI | GGCC | 6 cut(s) | 3, 231, 300, 571, 888, 1016 |
| ApeKI | GCWGC | 3 cut(s) | 686, 802, 1253 |
| ApoI | RAATTY | 1 cut(s) | 217 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 164, 196 |
| AseI | ATTAAT | 1 cut(s) | 810 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 221, 1018 |
| AspLEI | GCGC | 3 cut(s) | 362, 707, 745 |
| AspS9I | GGNCC | 4 cut(s) | 232, 316, 961, 1093 |
| AsuHPI | GGTGA | 2 cut(s) | 89, 247 |
| AvaII | GGWCC | 3 cut(s) | 316, 961, 1093 |
| BaeGI | GKGCMC | 1 cut(s) | 531 |
| BalI | TGGCCA | 3 cut(s) | 5, 302, 573 |
| BanI | GGYRCC | 3 cut(s) | 266, 528, 742 |
| BauI | CACGAG | 2 cut(s) | 168, 381 |
| BbsI | GAAGAC | 1 cut(s) | 67 |
| BbvCI | CCTCAGC | 1 cut(s) | 132 |
| BbvI | GCAGC | 3 cut(s) | 698, 789, 1240 |
| BccI | CCATC | 3 cut(s) | 134, 497, 1136 |
| BciT130I | CCWGG | 5 cut(s) | 259, 299, 309, 836, 942 |
| BciVI | GTATCC | 1 cut(s) | 948 |
| BcoDI | GTCTC | 2 cut(s) | 165, 898 |
| BfaI | CTAG | 1 cut(s) | 492 |
| BfoI | RGCGCY | 1 cut(s) | 746 |
| BfuI | GTATCC | 1 cut(s) | 948 |
| BisI | GCNGC | 6 cut(s) | 332, 561, 687, 803, 1001, 1254 |
| BlsI | GCNGC | 6 cut(s) | 333, 562, 688, 804, 1002, 1255 |
| BmcAI | AGTACT | 2 cut(s) | 490, 640 |
| Bme1390I | CCNGG | 5 cut(s) | 259, 299, 309, 836, 942 |
| Bme18I | GGWCC | 3 cut(s) | 316, 961, 1093 |
| BmgT120I | GGNCC | 4 cut(s) | 232, 316, 961, 1093 |
| BmiI | GGNNCC | 9 cut(s) | 268, 318, 435, 530, 744, 951, 963, 1048, 1196 |
| BmrFI | CCNGG | 5 cut(s) | 259, 299, 309, 836, 942 |
| BmrI | ACTGGG | 2 cut(s) | 7, 1152 |
| BmsI | GCATC | 3 cut(s) | 487, 516, 869 |
| BmuI | ACTGGG | 2 cut(s) | 7, 1152 |
| BpiI | GAAGAC | 1 cut(s) | 67 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1038, 1070 |
| BpmI | CTGGAG | 2 cut(s) | 968, 1160 |
| Bpu10I | CCTNAGC | 1 cut(s) | 132 |
| BsaAI | YACGTR | 1 cut(s) | 485 |
| BsaHI | GRCGYC | 1 cut(s) | 743 |
| BsaI | GGTCTC | 1 cut(s) | 165 |
| BsaJI | CCNNGG | 4 cut(s) | 258, 429, 834, 835 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 418, 448 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 444, 726, 836, 886, 971 |
| Bse118I | RCCGGY | 1 cut(s) | 645 |
| Bse1I | ACTGG | 3 cut(s) | 13, 750, 1158 |
| BseBI | CCWGG | 5 cut(s) | 259, 299, 309, 836, 942 |
| BseDI | CCNNGG | 4 cut(s) | 258, 429, 834, 835 |
| BseGI | GGATG | 4 cut(s) | 62, 126, 353, 826 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 444, 726, 836, 886, 971 |
| BseMII | CTCAG | 4 cut(s) | 84, 146, 176, 437 |
| BseNI | ACTGG | 3 cut(s) | 13, 750, 1158 |
| BseRI | GAGGAG | 7 cut(s) | 11, 14, 23, 32, 35, 485, 899 |
| BseSI | GKGCMC | 1 cut(s) | 531 |
| BseXI | GCAGC | 3 cut(s) | 698, 789, 1240 |
| BseYI | CCCAGC | 4 cut(s) | 444, 532, 553, 1066 |
| Bsh1236I | CGCG | 1 cut(s) | 705 |
| BshFI | GGCC | 6 cut(s) | 5, 233, 302, 573, 890, 1018 |
| BshNI | GGYRCC | 3 cut(s) | 266, 528, 742 |
| BsiSI | CCGG | 1 cut(s) | 646 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 444, 726, 836, 886, 971 |
| BsmAI | GTCTC | 2 cut(s) | 165, 898 |
| BsmBI | CGTCTC | 1 cut(s) | 898 |
| BsmI | GAATGC | 1 cut(s) | 289 |
| BsnI | GGCC | 6 cut(s) | 5, 233, 302, 573, 890, 1018 |
| Bso31I | GGTCTC | 1 cut(s) | 165 |
| Bsp1286I | GDGCHC | 1 cut(s) | 531 |
| Bsp143I | GATC | 3 cut(s) | 627, 780, 912 |
| BspACI | CCGC | 4 cut(s) | 320, 332, 560, 1001 |
| BspANI | GGCC | 6 cut(s) | 5, 233, 302, 573, 890, 1018 |
| BspCNI | CTCAG | 4 cut(s) | 83, 145, 175, 436 |
| BspFNI | CGCG | 1 cut(s) | 705 |
| BspLI | GGNNCC | 9 cut(s) | 268, 318, 435, 530, 744, 951, 963, 1048, 1196 |
| BspPI | GGATC | 2 cut(s) | 788, 907 |
| BspT107I | GGYRCC | 3 cut(s) | 266, 528, 742 |
| BspTNI | GGTCTC | 1 cut(s) | 165 |
| BsrFI | RCCGGY | 1 cut(s) | 645 |
| BsrI | ACTGG | 3 cut(s) | 13, 750, 1158 |
| BssAI | RCCGGY | 1 cut(s) | 645 |
| BssECI | CCNNGG | 4 cut(s) | 258, 429, 834, 835 |
| BssMI | GATC | 3 cut(s) | 627, 780, 912 |
| BssNI | GRCGYC | 1 cut(s) | 743 |
| BssSI | CACGAG | 2 cut(s) | 168, 381 |
| BssT1I | CCWWGG | 1 cut(s) | 429 |
| Bst2BI | CACGAG | 2 cut(s) | 168, 381 |
| Bst2UI | CCWGG | 5 cut(s) | 259, 299, 309, 836, 942 |
| Bst4CI | ACNGT | 2 cut(s) | 587, 936 |
| BstACI | GRCGYC | 1 cut(s) | 743 |
| BstBAI | YACGTR | 1 cut(s) | 485 |
| BstC8I | GCNNGC | 2 cut(s) | 329, 989 |
| BstDEI | CTNAG | 5 cut(s) | 70, 132, 162, 423, 511 |
| BstEII | GGTNACC | 1 cut(s) | 95 |
| BstF5I | GGATG | 4 cut(s) | 62, 126, 353, 826 |
| BstFNI | CGCG | 1 cut(s) | 705 |
| BstH2I | RGCGCY | 1 cut(s) | 746 |
| BstHHI | GCGC | 3 cut(s) | 362, 707, 745 |
| BstKTI | GATC | 3 cut(s) | 630, 783, 915 |
| BstMAI | GTCTC | 2 cut(s) | 165, 898 |
| BstMBI | GATC | 3 cut(s) | 627, 780, 912 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 328, 997, 1006, 1015 |
| BstNI | CCWGG | 5 cut(s) | 259, 299, 309, 836, 942 |
| BstPI | GGTNACC | 1 cut(s) | 95 |
| BstSCI | CCNGG | 5 cut(s) | 257, 297, 307, 834, 940 |
| BstSLI | GKGCMC | 1 cut(s) | 531 |
| BstSNI | TACGTA | 1 cut(s) | 485 |
| BstUI | CGCG | 1 cut(s) | 705 |
| BstV1I | GCAGC | 3 cut(s) | 698, 789, 1240 |
| BstV2I | GAAGAC | 1 cut(s) | 67 |
| BstX2I | RGATCY | 1 cut(s) | 780 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 258, 1145, 1165 |
| BstYI | RGATCY | 1 cut(s) | 780 |
| BsuI | GTATCC | 1 cut(s) | 948 |
| BsuRI | GGCC | 6 cut(s) | 5, 233, 302, 573, 890, 1018 |
| BtgZI | GCGATG | 3 cut(s) | 686, 846, 981 |
| BtsCI | GGATG | 4 cut(s) | 62, 126, 353, 826 |
| BtsI | GCAGTG | 1 cut(s) | 1248 |
| BtsIMutI | CAGTG | 3 cut(s) | 757, 1165, 1248 |
| Cac8I | GCNNGC | 2 cut(s) | 329, 989 |
| CfoI | GCGC | 3 cut(s) | 362, 707, 745 |
| Cfr10I | RCCGGY | 1 cut(s) | 645 |
| Cfr13I | GGNCC | 4 cut(s) | 232, 316, 961, 1093 |
| Csp6I | GTAC | 3 cut(s) | 38, 489, 639 |
| CviAII | CATG | 6 cut(s) | 304, 1033, 1057, 1082, 1139, 1257 |
| CviQI | GTAC | 3 cut(s) | 38, 489, 639 |
| DdeI | CTNAG | 5 cut(s) | 70, 132, 162, 423, 511 |
| DinI | GGCGCC | 1 cut(s) | 744 |
| DpnI | GATC | 3 cut(s) | 629, 782, 914 |
| DpnII | GATC | 3 cut(s) | 627, 780, 912 |
| DraI | TTTAAA | 1 cut(s) | 669 |
| EaeI | YGGCCR | 3 cut(s) | 3, 300, 571 |
| Eco105I | TACGTA | 1 cut(s) | 485 |
| Eco130I | CCWWGG | 1 cut(s) | 429 |
| Eco147I | AGGCCT | 2 cut(s) | 890, 1018 |
| Eco31I | GGTCTC | 1 cut(s) | 165 |
| Eco47I | GGWCC | 3 cut(s) | 316, 961, 1093 |
| Eco57I | CTGAAG | 1 cut(s) | 752 |
| Eco91I | GGTNACC | 1 cut(s) | 95 |
| EcoO109I | RGGNCCY | 3 cut(s) | 316, 961, 1093 |
| EcoO65I | GGTNACC | 1 cut(s) | 95 |
| EcoRII | CCWGG | 5 cut(s) | 257, 297, 307, 834, 940 |
| EcoT14I | CCWWGG | 1 cut(s) | 429 |
| EgeI | GGCGCC | 1 cut(s) | 744 |
| EheI | GGCGCC | 1 cut(s) | 744 |
| ErhI | CCWWGG | 1 cut(s) | 429 |
| Esp3I | CGTCTC | 1 cut(s) | 898 |
| FaeI | CATG | 6 cut(s) | 307, 1036, 1060, 1085, 1142, 1260 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 422, 454 |
| FatI | CATG | 6 cut(s) | 303, 1032, 1056, 1081, 1138, 1256 |
| FauI | CCCGC | 1 cut(s) | 327 |
| FauNDI | CATATG | 1 cut(s) | 364 |
| Fnu4HI | GCNGC | 6 cut(s) | 332, 561, 687, 803, 1001, 1254 |
| FokI | GGATG | 4 cut(s) | 49, 113, 340, 813 |
| Fsp4HI | GCNGC | 6 cut(s) | 332, 561, 687, 803, 1001, 1254 |
| FspBI | CTAG | 1 cut(s) | 492 |
| FspI | TGCGCA | 1 cut(s) | 361 |
| GlaI | GCGC | 3 cut(s) | 361, 706, 744 |
| GluI | GCNGC | 6 cut(s) | 332, 561, 687, 803, 1001, 1254 |
| GsaI | CCCAGC | 4 cut(s) | 448, 536, 557, 1070 |
| GsuI | CTGGAG | 2 cut(s) | 968, 1160 |
| HaeII | RGCGCY | 1 cut(s) | 746 |
| HaeIII | GGCC | 6 cut(s) | 5, 233, 302, 573, 890, 1018 |
| HapII | CCGG | 1 cut(s) | 646 |
| HhaI | GCGC | 3 cut(s) | 362, 707, 745 |
| Hin1I | GRCGYC | 1 cut(s) | 743 |
| Hin1II | CATG | 6 cut(s) | 307, 1036, 1060, 1085, 1142, 1260 |
| Hin6I | GCGC | 3 cut(s) | 360, 705, 743 |
| HinP1I | GCGC | 3 cut(s) | 360, 705, 743 |
| HinfI | GANTC | 4 cut(s) | 116, 419, 769, 843 |
| HpaII | CCGG | 1 cut(s) | 646 |
| HphI | GGTGA | 2 cut(s) | 89, 247 |
| Hpy166II | GTNNAC | 2 cut(s) | 790, 853 |
| Hpy188I | TCNGA | 4 cut(s) | 426, 774, 931, 1187 |
| Hpy188III | TCNNGA | 4 cut(s) | 79, 168, 947, 1235 |
| Hpy8I | GTNNAC | 2 cut(s) | 790, 853 |
| HpyAV | CCTTC | 8 cut(s) | 38, 727, 952, 1008, 1029, 1034, 1121, 1140 |
| HpyCH4III | ACNGT | 2 cut(s) | 587, 936 |
| HpyCH4IV | ACGT | 1 cut(s) | 484 |
| HpyCH4V | TGCA | 6 cut(s) | 54, 500, 625, 686, 805, 1256 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 328, 997, 1006, 1015 |
| HpyF3I | CTNAG | 5 cut(s) | 70, 132, 162, 423, 511 |
| HpySE526I | ACGT | 1 cut(s) | 484 |
| Hsp92I | GRCGYC | 1 cut(s) | 743 |
| Hsp92II | CATG | 6 cut(s) | 307, 1036, 1060, 1085, 1142, 1260 |
| HspAI | GCGC | 3 cut(s) | 360, 705, 743 |
| KasI | GGCGCC | 1 cut(s) | 742 |
| Kzo9I | GATC | 3 cut(s) | 627, 780, 912 |
| LmnI | GCTCC | 5 cut(s) | 439, 949, 1046, 1159, 1237 |
| Lsp1109I | GCAGC | 3 cut(s) | 698, 789, 1240 |
| LweI | GCATC | 3 cut(s) | 487, 516, 869 |
| MaeI | CTAG | 1 cut(s) | 492 |
| MaeII | ACGT | 1 cut(s) | 484 |
| MaeIII | GTNAC | 4 cut(s) | 95, 150, 165, 1244 |
| MalI | GATC | 3 cut(s) | 629, 782, 914 |
| MboI | GATC | 3 cut(s) | 627, 780, 912 |
| MboII | GAAGA | 3 cut(s) | 67, 214, 623 |
| MflI | RGATCY | 1 cut(s) | 780 |
| MhlI | GDGCHC | 1 cut(s) | 531 |
| MlsI | TGGCCA | 3 cut(s) | 5, 302, 573 |
| MluCI | AATT | 5 cut(s) | 217, 575, 899, 919, 1218 |
| MluNI | TGGCCA | 3 cut(s) | 5, 302, 573 |
| Mly113I | GGCGCC | 1 cut(s) | 743 |
| MmeI | TCCRAC | 1 cut(s) | 1165 |
| Mox20I | TGGCCA | 3 cut(s) | 5, 302, 573 |
| MroXI | GAANNNNTTC | 2 cut(s) | 221, 1018 |
| MscI | TGGCCA | 3 cut(s) | 5, 302, 573 |
| MseI | TTAA | 2 cut(s) | 668, 810 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1143 |
| Msp20I | TGGCCA | 3 cut(s) | 5, 302, 573 |
| MspA1I | CMGCKG | 2 cut(s) | 322, 1003 |
| MspI | CCGG | 1 cut(s) | 646 |
| MspR9I | CCNGG | 5 cut(s) | 259, 299, 309, 836, 942 |
| Mva1269I | GAATGC | 1 cut(s) | 289 |
| MvaI | CCWGG | 5 cut(s) | 259, 299, 309, 836, 942 |
| MvnI | CGCG | 1 cut(s) | 705 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 328, 997, 1006, 1015 |
| NarI | GGCGCC | 1 cut(s) | 743 |
| NdeI | CATATG | 1 cut(s) | 364 |
| NdeII | GATC | 3 cut(s) | 627, 780, 912 |
| NlaIII | CATG | 6 cut(s) | 307, 1036, 1060, 1085, 1142, 1260 |
| NlaIV | GGNNCC | 9 cut(s) | 268, 318, 435, 530, 744, 951, 963, 1048, 1196 |
| NmuCI | GTSAC | 2 cut(s) | 95, 165 |
| NsbI | TGCGCA | 1 cut(s) | 361 |
| PasI | CCCWGGG | 1 cut(s) | 835 |
| PceI | AGGCCT | 2 cut(s) | 890, 1018 |
| PctI | GAATGC | 1 cut(s) | 289 |
| PdmI | GAANNNNTTC | 2 cut(s) | 221, 1018 |
| PfeI | GAWTC | 4 cut(s) | 116, 419, 769, 843 |
| PkrI | GCNGC | 6 cut(s) | 333, 562, 688, 804, 1002, 1255 |
| PluTI | GGCGCC | 1 cut(s) | 746 |
| Ppu21I | YACGTR | 1 cut(s) | 485 |
| PpuMI | RGGWCCY | 3 cut(s) | 316, 961, 1093 |
| PshBI | ATTAAT | 1 cut(s) | 810 |
| Psp5II | RGGWCCY | 3 cut(s) | 316, 961, 1093 |
| Psp6I | CCWGG | 5 cut(s) | 257, 297, 307, 834, 940 |
| PspEI | GGTNACC | 1 cut(s) | 95 |
| PspFI | CCCAGC | 4 cut(s) | 444, 532, 553, 1066 |
| PspGI | CCWGG | 5 cut(s) | 257, 297, 307, 834, 940 |
| PspN4I | GGNNCC | 9 cut(s) | 268, 318, 435, 530, 744, 951, 963, 1048, 1196 |
| PspPI | GGNCC | 4 cut(s) | 232, 316, 961, 1093 |
| PspPPI | RGGWCCY | 3 cut(s) | 316, 961, 1093 |
| PsuI | RGATCY | 1 cut(s) | 780 |
| RsaI | GTAC | 3 cut(s) | 39, 490, 640 |
| RsaNI | GTAC | 3 cut(s) | 38, 489, 639 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1143 |
| SaqAI | TTAA | 2 cut(s) | 668, 810 |
| SatI | GCNGC | 6 cut(s) | 332, 561, 687, 803, 1001, 1254 |
| Sau3AI | GATC | 3 cut(s) | 627, 780, 912 |
| Sau96I | GGNCC | 4 cut(s) | 232, 316, 961, 1093 |
| ScaI | AGTACT | 2 cut(s) | 490, 640 |
| ScrFI | CCNGG | 5 cut(s) | 259, 299, 309, 836, 942 |
| SduI | GDGCHC | 1 cut(s) | 531 |
| SfaNI | GCATC | 3 cut(s) | 487, 516, 869 |
| SfoI | GGCGCC | 1 cut(s) | 744 |
| SinI | GGWCC | 3 cut(s) | 316, 961, 1093 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1143 |
| SnaBI | TACGTA | 1 cut(s) | 485 |
| Sse9I | AATT | 5 cut(s) | 217, 575, 899, 919, 1218 |
| SseBI | AGGCCT | 2 cut(s) | 890, 1018 |
| SsiI | CCGC | 4 cut(s) | 320, 332, 560, 1001 |
| SspDI | GGCGCC | 1 cut(s) | 742 |
| SspMI | CTAG | 1 cut(s) | 492 |
| StuI | AGGCCT | 2 cut(s) | 890, 1018 |
| StyD4I | CCNGG | 5 cut(s) | 257, 297, 307, 834, 940 |
| StyI | CCWWGG | 1 cut(s) | 429 |
| TaaI | ACNGT | 2 cut(s) | 587, 936 |
| TaiI | ACGT | 1 cut(s) | 487 |
| TasI | AATT | 5 cut(s) | 217, 575, 899, 919, 1218 |
| TatI | WGTACW | 2 cut(s) | 488, 638 |
| TauI | GCSGC | 3 cut(s) | 334, 563, 1003 |
| TfiI | GAWTC | 4 cut(s) | 116, 419, 769, 843 |
| Tru1I | TTAA | 2 cut(s) | 668, 810 |
| Tru9I | TTAA | 2 cut(s) | 668, 810 |
| TscAI | CASTG | 3 cut(s) | 757, 1165, 1255 |
| TseFI | GTSAC | 2 cut(s) | 95, 165 |
| TseI | GCWGC | 3 cut(s) | 686, 802, 1253 |
| Tsp45I | GTSAC | 2 cut(s) | 95, 165 |
| TspDTI | ATGAA | 4 cut(s) | 611, 750, 815, 835 |
| TspRI | CASTG | 3 cut(s) | 757, 1165, 1255 |
| VpaK11BI | GGWCC | 3 cut(s) | 316, 961, 1093 |
| VspI | ATTAAT | 1 cut(s) | 810 |
| XapI | RAATTY | 1 cut(s) | 217 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1000 |
| XmnI | GAANNNNTTC | 2 cut(s) | 221, 1018 |
| XspI | CTAG | 1 cut(s) | 492 |
| ZrmI | AGTACT | 2 cut(s) | 490, 640 |