ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 360 |
| Acc36I | ACCTGC | 1 cut(s) | 898 |
| AciI | CCGC | 3 cut(s) | 259, 373, 383 |
| AclWI | GGATC | 2 cut(s) | 570, 659 |
| AcsI | RAATTY | 5 cut(s) | 52, 115, 128, 178, 229 |
| AfaI | GTAC | 2 cut(s) | 64, 987 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 247, 422, 646 |
| AgsI | TTSAA | 2 cut(s) | 52, 464 |
| AjnI | CCWGG | 2 cut(s) | 245, 668 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 809, 841 |
| AluBI | AGCT | 1 cut(s) | 253 |
| AluI | AGCT | 1 cut(s) | 253 |
| Alw26I | GTCTC | 3 cut(s) | 881, 925, 964 |
| AlwI | GGATC | 2 cut(s) | 570, 659 |
| AoxI | GGCC | 1 cut(s) | 834 |
| ApeKI | GCWGC | 2 cut(s) | 370, 701 |
| ApoI | RAATTY | 5 cut(s) | 52, 115, 128, 178, 229 |
| AspS9I | GGNCC | 1 cut(s) | 834 |
| AsuHPI | GGTGA | 2 cut(s) | 619, 826 |
| BbvI | GCAGC | 2 cut(s) | 357, 688 |
| BccI | CCATC | 2 cut(s) | 158, 709 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 176, 210 |
| BciT130I | CCWGG | 2 cut(s) | 247, 670 |
| BciVI | GTATCC | 1 cut(s) | 438 |
| BcoDI | GTCTC | 3 cut(s) | 881, 925, 964 |
| BfmI | CTRYAG | 1 cut(s) | 273 |
| BfuAI | ACCTGC | 1 cut(s) | 898 |
| BfuI | GTATCC | 1 cut(s) | 438 |
| BisI | GCNGC | 2 cut(s) | 371, 702 |
| BlsI | GCNGC | 2 cut(s) | 372, 703 |
| BmcAI | AGTACT | 1 cut(s) | 987 |
| Bme1390I | CCNGG | 2 cut(s) | 247, 670 |
| BmgT120I | GGNCC | 1 cut(s) | 834 |
| BmiI | GGNNCC | 2 cut(s) | 638, 835 |
| BmrFI | CCNGG | 2 cut(s) | 247, 670 |
| BmrI | ACTGGG | 1 cut(s) | 706 |
| BmsI | GCATC | 2 cut(s) | 745, 847 |
| BmuI | ACTGGG | 1 cut(s) | 706 |
| BpmI | CTGGAG | 1 cut(s) | 108 |
| BsaBI | GATNNNNATC | 1 cut(s) | 309 |
| BsaJI | CCNNGG | 3 cut(s) | 150, 246, 668 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 159, 189, 442, 472, 878, 908 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 247, 422, 646 |
| Bse1I | ACTGG | 6 cut(s) | 91, 208, 343, 356, 701, 802 |
| Bse8I | GATNNNNATC | 1 cut(s) | 309 |
| BseBI | CCWGG | 2 cut(s) | 247, 670 |
| BseDI | CCNNGG | 3 cut(s) | 150, 246, 668 |
| BseGI | GGATG | 1 cut(s) | 146 |
| BseJI | GATNNNNATC | 1 cut(s) | 309 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 247, 422, 646 |
| BseMII | CTCAG | 2 cut(s) | 418, 692 |
| BseNI | ACTGG | 6 cut(s) | 91, 208, 343, 356, 701, 802 |
| BseRI | GAGGAG | 2 cut(s) | 259, 932 |
| BseXI | GCAGC | 2 cut(s) | 357, 688 |
| BsgI | GTGCAG | 1 cut(s) | 711 |
| BshFI | GGCC | 1 cut(s) | 836 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 247, 422, 646 |
| BsmAI | GTCTC | 3 cut(s) | 881, 925, 964 |
| BsnI | GGCC | 1 cut(s) | 836 |
| Bsp1407I | TGTACA | 1 cut(s) | 62 |
| Bsp143I | GATC | 5 cut(s) | 400, 484, 562, 664, 938 |
| BspACI | CCGC | 3 cut(s) | 259, 373, 383 |
| BspANI | GGCC | 1 cut(s) | 836 |
| BspCNI | CTCAG | 2 cut(s) | 417, 691 |
| BspLI | GGNNCC | 2 cut(s) | 638, 835 |
| BspMI | ACCTGC | 1 cut(s) | 898 |
| BspPI | GGATC | 2 cut(s) | 570, 659 |
| BsrGI | TGTACA | 1 cut(s) | 62 |
| BsrI | ACTGG | 6 cut(s) | 91, 208, 343, 356, 701, 802 |
| BssECI | CCNNGG | 3 cut(s) | 150, 246, 668 |
| BssMI | GATC | 5 cut(s) | 400, 484, 562, 664, 938 |
| Bst2UI | CCWGG | 2 cut(s) | 247, 670 |
| Bst4CI | ACNGT | 4 cut(s) | 67, 277, 505, 894 |
| Bst6I | CTCTTC | 1 cut(s) | 148 |
| BstAUI | TGTACA | 1 cut(s) | 62 |
| BstC8I | GCNNGC | 1 cut(s) | 949 |
| BstDEI | CTNAG | 2 cut(s) | 404, 678 |
| BstDSI | CCRYGG | 1 cut(s) | 150 |
| BstF5I | GGATG | 1 cut(s) | 146 |
| BstKTI | GATC | 5 cut(s) | 403, 487, 565, 667, 941 |
| BstMAI | GTCTC | 3 cut(s) | 881, 925, 964 |
| BstMBI | GATC | 5 cut(s) | 400, 484, 562, 664, 938 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 204, 710, 866 |
| BstNI | CCWGG | 2 cut(s) | 247, 670 |
| BstNSI | RCATGY | 1 cut(s) | 951 |
| BstSCI | CCNGG | 2 cut(s) | 245, 668 |
| BstSFI | CTRYAG | 1 cut(s) | 273 |
| BstV1I | GCAGC | 2 cut(s) | 357, 688 |
| BsuI | GTATCC | 1 cut(s) | 438 |
| BsuRI | GGCC | 1 cut(s) | 836 |
| BtgI | CCRYGG | 1 cut(s) | 150 |
| BtgZI | GCGATG | 1 cut(s) | 728 |
| BtsCI | GGATG | 1 cut(s) | 146 |
| BtsI | GCAGTG | 1 cut(s) | 330 |
| BtsIMutI | CAGTG | 3 cut(s) | 330, 363, 591 |
| BveI | ACCTGC | 1 cut(s) | 898 |
| Cac8I | GCNNGC | 1 cut(s) | 949 |
| Cfr13I | GGNCC | 1 cut(s) | 834 |
| Csp6I | GTAC | 2 cut(s) | 63, 986 |
| CviAII | CATG | 3 cut(s) | 438, 948, 993 |
| CviJI | RGCY | 7 cut(s) | 207, 253, 515, 701, 836, 869, 959 |
| CviKI_1 | RGCY | 7 cut(s) | 207, 253, 515, 701, 836, 869, 959 |
| CviQI | GTAC | 2 cut(s) | 63, 986 |
| DdeI | CTNAG | 2 cut(s) | 404, 678 |
| DpnI | GATC | 5 cut(s) | 402, 486, 564, 666, 940 |
| DpnII | GATC | 5 cut(s) | 400, 484, 562, 664, 938 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 360 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 360 |
| Eam1104I | CTCTTC | 1 cut(s) | 148 |
| EarI | CTCTTC | 1 cut(s) | 148 |
| EciI | GGCGGA | 1 cut(s) | 248 |
| Eco32I | GATATC | 1 cut(s) | 612 |
| EcoO109I | RGGNCCY | 1 cut(s) | 834 |
| EcoRI | GAATTC | 3 cut(s) | 115, 178, 229 |
| EcoRII | CCWGG | 2 cut(s) | 245, 668 |
| EcoRV | GATATC | 1 cut(s) | 612 |
| FaeI | CATG | 3 cut(s) | 441, 951, 996 |
| FaiI | YATR | 9 cut(s) | 40, 159, 189, 213, 439, 539, 655, 949, 994 |
| FatI | CATG | 3 cut(s) | 437, 947, 992 |
| Fnu4HI | GCNGC | 2 cut(s) | 371, 702 |
| FokI | GGATG | 1 cut(s) | 133 |
| Fsp4HI | GCNGC | 2 cut(s) | 371, 702 |
| GluI | GCNGC | 2 cut(s) | 371, 702 |
| GsuI | CTGGAG | 1 cut(s) | 108 |
| HaeIII | GGCC | 1 cut(s) | 836 |
| Hin1II | CATG | 3 cut(s) | 441, 951, 996 |
| HinfI | GANTC | 3 cut(s) | 7, 264, 845 |
| HphI | GGTGA | 2 cut(s) | 619, 826 |
| Hpy166II | GTNNAC | 2 cut(s) | 435, 582 |
| Hpy188I | TCNGA | 7 cut(s) | 121, 184, 283, 315, 562, 664, 844 |
| Hpy188III | TCNNGA | 2 cut(s) | 615, 942 |
| Hpy8I | GTNNAC | 2 cut(s) | 435, 582 |
| Hpy99I | CGWCG | 1 cut(s) | 229 |
| HpyAV | CCTTC | 2 cut(s) | 231, 627 |
| HpyCH4III | ACNGT | 4 cut(s) | 67, 277, 505, 894 |
| HpyCH4IV | ACGT | 1 cut(s) | 820 |
| HpyCH4V | TGCA | 7 cut(s) | 323, 497, 537, 601, 728, 907, 951 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 204, 710, 866 |
| HpyF3I | CTNAG | 2 cut(s) | 404, 678 |
| HpySE526I | ACGT | 1 cut(s) | 820 |
| Hsp92II | CATG | 3 cut(s) | 441, 951, 996 |
| Kzo9I | GATC | 5 cut(s) | 400, 484, 562, 664, 938 |
| LmnI | GCTCC | 1 cut(s) | 250 |
| Lsp1109I | GCAGC | 2 cut(s) | 357, 688 |
| LweI | GCATC | 2 cut(s) | 745, 847 |
| MaeII | ACGT | 1 cut(s) | 820 |
| MalI | GATC | 5 cut(s) | 402, 486, 564, 666, 940 |
| MboI | GATC | 5 cut(s) | 400, 484, 562, 664, 938 |
| MboII | GAAGA | 6 cut(s) | 29, 32, 135, 404, 636, 735 |
| MfeI | CAATTG | 1 cut(s) | 11 |
| MluCI | AATT | 9 cut(s) | 11, 52, 115, 128, 178, 229, 464, 650, 881 |
| MlyI | GAGTC | 1 cut(s) | 854 |
| MmeI | TCCRAC | 2 cut(s) | 369, 807 |
| MseI | TTAA | 5 cut(s) | 101, 132, 309, 344, 912 |
| MslI | CAYNNNNRTG | 1 cut(s) | 162 |
| MspR9I | CCNGG | 2 cut(s) | 247, 670 |
| MunI | CAATTG | 1 cut(s) | 11 |
| MvaI | CCWGG | 2 cut(s) | 247, 670 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 204, 710, 866 |
| NdeII | GATC | 5 cut(s) | 400, 484, 562, 664, 938 |
| NlaIII | CATG | 3 cut(s) | 441, 951, 996 |
| NlaIV | GGNNCC | 2 cut(s) | 638, 835 |
| NspI | RCATGY | 1 cut(s) | 951 |
| PaeI | GCATGC | 1 cut(s) | 951 |
| PfeI | GAWTC | 1 cut(s) | 264 |
| PkrI | GCNGC | 2 cut(s) | 372, 703 |
| PleI | GAGTC | 1 cut(s) | 853 |
| PpsI | GAGTC | 1 cut(s) | 853 |
| Psp6I | CCWGG | 2 cut(s) | 245, 668 |
| PspGI | CCWGG | 2 cut(s) | 245, 668 |
| PspN4I | GGNNCC | 2 cut(s) | 638, 835 |
| PspPI | GGNCC | 1 cut(s) | 834 |
| RsaI | GTAC | 2 cut(s) | 64, 987 |
| RsaNI | GTAC | 2 cut(s) | 63, 986 |
| RseI | CAYNNNNRTG | 1 cut(s) | 162 |
| SaqAI | TTAA | 5 cut(s) | 101, 132, 309, 344, 912 |
| SatI | GCNGC | 2 cut(s) | 371, 702 |
| Sau3AI | GATC | 5 cut(s) | 400, 484, 562, 664, 938 |
| Sau96I | GGNCC | 1 cut(s) | 834 |
| ScaI | AGTACT | 1 cut(s) | 987 |
| SchI | GAGTC | 1 cut(s) | 854 |
| ScrFI | CCNGG | 2 cut(s) | 247, 670 |
| SfaNI | GCATC | 2 cut(s) | 745, 847 |
| SfcI | CTRYAG | 1 cut(s) | 273 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 162 |
| SphI | GCATGC | 1 cut(s) | 951 |
| Sse9I | AATT | 9 cut(s) | 11, 52, 115, 128, 178, 229, 464, 650, 881 |
| SsiI | CCGC | 3 cut(s) | 259, 373, 383 |
| SspI | AATATT | 1 cut(s) | 793 |
| StyD4I | CCNGG | 2 cut(s) | 245, 668 |
| TaaI | ACNGT | 4 cut(s) | 67, 277, 505, 894 |
| TaiI | ACGT | 1 cut(s) | 823 |
| TaqI | TCGA | 2 cut(s) | 224, 568 |
| TasI | AATT | 9 cut(s) | 11, 52, 115, 128, 178, 229, 464, 650, 881 |
| TatI | WGTACW | 2 cut(s) | 62, 985 |
| TfiI | GAWTC | 1 cut(s) | 264 |
| Tru1I | TTAA | 5 cut(s) | 101, 132, 309, 344, 912 |
| Tru9I | TTAA | 5 cut(s) | 101, 132, 309, 344, 912 |
| TscAI | CASTG | 3 cut(s) | 330, 363, 598 |
| TseI | GCWGC | 2 cut(s) | 370, 701 |
| TspDTI | ATGAA | 3 cut(s) | 135, 300, 755 |
| TspGWI | ACGGA | 2 cut(s) | 139, 420 |
| TspRI | CASTG | 3 cut(s) | 330, 363, 598 |
| XapI | RAATTY | 5 cut(s) | 52, 115, 128, 178, 229 |
| XceI | RCATGY | 1 cut(s) | 951 |
| ZrmI | AGTACT | 1 cut(s) | 987 |