Rmu_sc0003110.1_g000023

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003110.1
OG0000016
Physical Location & Seq
Reverse (-)
117728 .. 118672
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003110.1_g000023.1.cds

Sequence Viewer

Length: 354 bp
atgatacatggcaatattctggtgtggaattgcagaggtgtggttaaccgtgaaacacaacatgctcttattgatctagtgcgagctaagaggccgagtttgatctttctcgctgagacccttgctcagcaggacatcattgattctcttcaaggaagattagggttccggggtaatttatgttttcctcaggaagatgggtcgcagggtgttgccttactttggaatgcagatctccatgttggtctacgcacatactcacccaattgttcgaagcggctatcacgtggcaagaacgacgacgtggtcccatttgctgcaagtctcttcatcttggggtcggggcaagattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.92

Weight (kDa)

7.78

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000016)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14281 FvH4_1g17621 FvH4_1g18471 FvH4_1g22021 FvH4_1g26014 FvH4_1g26331 FvH4_1g26332 FvH4_1g27351 FvH4_2g04721 FvH4_3g23731 FvH4_4g01641 FvH4_4g08952 FvH4_5g04831 FvH4_5g06181 FvH4_5g24782 FvH4_6g19793 FvH4_6g21830 FvH4_6g22052 FvH4_6g22781 FvH4_6g28711 FvH4_6g38132 FvH4_7g01611 FvH4_7g04461 FvH4_7g10253
malus_domestica MD12G1214900.v1.1
prunus_persica Prupe.1G178300_v2.0.a1 Prupe.2G081900_v2.0.a1 Prupe.7G035400_v2.0.a1 Prupe.8G101400_v2.0.a1
pyrus_communis pycom1094g00140 pycom11g05210 pycom15g38150
rosa_chinensis RchiOBHm_Chr0c45g0503781 RchiOBHm_Chr2g0127321 RchiOBHm_Chr2g0136131 RchiOBHm_Chr2g0137531 RchiOBHm_Chr3g0458071 RchiOBHm_Chr3g0468741 RchiOBHm_Chr4g0385261 RchiOBHm_Chr4g0398301 RchiOBHm_Chr4g0414741 RchiOBHm_Chr4g0427601 RchiOBHm_Chr5g0038191 RchiOBHm_Chr6g0264691 RchiOBHm_Chr7g0222611
rosa_laevigata RLG00000000450 RLG00000012411 RLG00000013342 RLG00000014003 RLG00000014274 RLG00000015222 RLG00000015327 RLG00000017257 RLG00000018284 RLG00000018325 RLG00000021633 RLG00000030959 RLG00000031522 RLG00000031692 RLG00000034534 RLG00000034656 RLG00000034719 RLG00000034775 RLG00000035707 RLG00000035994 RLG00000036662
rosa_multiflora Rmu_co7958827.1_g000001 Rmu_co7982736.1_g000001 Rmu_co7994068.1_g000001 Rmu_co8004766.1_g000001 Rmu_co8055616.1_g000001 Rmu_co8065842.1_g000001 Rmu_co8075422.1_g000001 Rmu_co8115052.1_g000001 Rmu_co8123540.1_g000001 Rmu_co8130588.1_g000001 Rmu_co8141300.1_g000001 Rmu_co8175458.1_g000001 Rmu_co8181142.1_g000001 Rmu_co8186168.1_g000001 Rmu_co8186320.1_g000001 Rmu_co8193972.1_g000001 Rmu_co8218810.1_g000001 Rmu_co8231243.1_g000001 Rmu_co8235827.1_g000001 Rmu_co8238175.1_g000001 Rmu_co8252519.1_g000001 Rmu_co8277813.1_g000001 Rmu_co8305149.1_g000001 Rmu_co8330153.1_g000001 Rmu_co8337761.1_g000001 Rmu_co8342667.1_g000001 Rmu_co8342835.1_g000001 Rmu_co8350369.1_g000001 Rmu_co8364117.1_g000001 Rmu_co8396865.1_g000001 Rmu_co8397583.1_g000001 Rmu_co8402971.1_g000001 Rmu_co8412027.1_g000001 Rmu_co8412027.1_g000002 Rmu_co8426061.1_g000001 Rmu_co8426061.1_g000002 Rmu_co8432275.1_g000001 Rmu_co8439531.1_g000001 Rmu_co8445913.1_g000001 Rmu_co8449645.1_g000001 Rmu_co8455737.1_g000001 Rmu_co8459617.1_g000001 Rmu_co8465509.1_g000001 Rmu_co8471819.1_g000001 Rmu_co8481247.1_g000001 Rmu_co8504529.1_g000001 Rmu_co8509881.1_g000001 Rmu_co8513417.1_g000001 Rmu_co8519167.1_g000002 Rmu_sc0000028.1_g000006 Rmu_sc0000030.1_g000003 Rmu_sc0000047.1_g000031 Rmu_sc0000084.1_g000023 Rmu_sc0000166.1_g000048 Rmu_sc0000335.1_g000038 Rmu_sc0000361.1_g000054 Rmu_sc0000363.1_g000059 Rmu_sc0000365.1_g000045 Rmu_sc0000367.1_g000153 Rmu_sc0000367.1_g000156 Rmu_sc0000367.1_g000157 Rmu_sc0000370.1_g000020 Rmu_sc0000371.1_g000009 Rmu_sc0000371.1_g000010 Rmu_sc0000371.1_g000037 Rmu_sc0000388.1_g000042 Rmu_sc0000388.1_g000051 Rmu_sc0000388.1_g000060 Rmu_sc0000395.1_g000004 Rmu_sc0000395.1_g000005 Rmu_sc0000447.1_g000006 Rmu_sc0000487.1_g000076 Rmu_sc0000499.1_g000009 Rmu_sc0000508.1_g000007 Rmu_sc0000511.1_g000014 Rmu_sc0000511.1_g000015 Rmu_sc0000516.1_g000028 Rmu_sc0000540.1_g000059 Rmu_sc0000543.1_g000053 Rmu_sc0000556.1_g000011 Rmu_sc0000565.1_g000039 Rmu_sc0000574.1_g000015 Rmu_sc0000575.1_g000008 Rmu_sc0000586.1_g000010 Rmu_sc0000663.1_g000017 Rmu_sc0000676.1_g000012 Rmu_sc0000717.1_g000020 Rmu_sc0000744.1_g000048 Rmu_sc0000764.1_g000004 Rmu_sc0000795.1_g000004 Rmu_sc0000805.1_g000018 Rmu_sc0000805.1_g000034 Rmu_sc0000806.1_g000035 Rmu_sc0000806.1_g000036 Rmu_sc0000838.1_g000013 Rmu_sc0000901.1_g000012 Rmu_sc0001062.1_g000012 Rmu_sc0001075.1_g000024 Rmu_sc0001126.1_g000009 Rmu_sc0001136.1_g000047 Rmu_sc0001143.1_g000025 Rmu_sc0001211.1_g000064 Rmu_sc0001291.1_g000032 Rmu_sc0001385.1_g000001 Rmu_sc0001387.1_g000007 Rmu_sc0001405.1_g000010 Rmu_sc0001433.1_g000034 Rmu_sc0001468.1_g000005 Rmu_sc0001516.1_g000071 Rmu_sc0001544.1_g000029 Rmu_sc0001556.1_g000005 Rmu_sc0001565.1_g000015 Rmu_sc0001569.1_g000001 Rmu_sc0001572.1_g000021 Rmu_sc0001619.1_g000008 Rmu_sc0001623.1_g000004 Rmu_sc0001625.1_g000004 Rmu_sc0001631.1_g000011 Rmu_sc0001653.1_g000032 Rmu_sc0001654.1_g000022 Rmu_sc0001701.1_g000018 Rmu_sc0001749.1_g000001 Rmu_sc0001764.1_g000002 Rmu_sc0001764.1_g000003 Rmu_sc0001793.1_g000058 Rmu_sc0001793.1_g000059 Rmu_sc0001836.1_g000041 Rmu_sc0001850.1_g000008 Rmu_sc0001911.1_g000004 Rmu_sc0002070.1_g000016 Rmu_sc0002070.1_g000032 Rmu_sc0002094.1_g000003 Rmu_sc0002107.1_g000010 Rmu_sc0002116.1_g000005 Rmu_sc0002132.1_g000014 Rmu_sc0002138.1_g000003 Rmu_sc0002192.1_g000015 Rmu_sc0002244.1_g000047 Rmu_sc0002269.1_g000020 Rmu_sc0002271.1_g000008 Rmu_sc0002283.1_g000011 Rmu_sc0002343.1_g000061 Rmu_sc0002343.1_g000074 Rmu_sc0002369.1_g000002 Rmu_sc0002403.1_g000003 Rmu_sc0002425.1_g000011 Rmu_sc0002425.1_g000012 Rmu_sc0002447.1_g000017 Rmu_sc0002494.1_g000013 Rmu_sc0002515.1_g000006 Rmu_sc0002515.1_g000007 Rmu_sc0002529.1_g000018 Rmu_sc0002556.1_g000010 Rmu_sc0002586.1_g000010 Rmu_sc0002693.1_g000012 Rmu_sc0002725.1_g000002 Rmu_sc0002738.1_g000006 Rmu_sc0002754.1_g000037 Rmu_sc0002776.1_g000038 Rmu_sc0002793.1_g000008 Rmu_sc0002840.1_g000003 Rmu_sc0002843.1_g000013 Rmu_sc0002843.1_g000014 Rmu_sc0002848.1_g000015 Rmu_sc0002858.1_g000011 Rmu_sc0002927.1_g000005 Rmu_sc0002955.1_g000018 Rmu_sc0002964.1_g000006 Rmu_sc0002986.1_g000055 Rmu_sc0003064.1_g000003 Rmu_sc0003110.1_g000023 Rmu_sc0003124.1_g000014 Rmu_sc0003226.1_g000009 Rmu_sc0003337.1_g000037 Rmu_sc0003387.1_g000002 Rmu_sc0003443.1_g000021 Rmu_sc0003475.1_g000023 Rmu_sc0003669.1_g000033 Rmu_sc0003722.1_g000039 Rmu_sc0003804.1_g000008 Rmu_sc0003804.1_g000009 Rmu_sc0003809.1_g000015 Rmu_sc0003858.1_g000005 Rmu_sc0003919.1_g000010 Rmu_sc0003919.1_g000011 Rmu_sc0004010.1_g000015 Rmu_sc0004036.1_g000004 Rmu_sc0004086.1_g000014 Rmu_sc0004115.1_g000017 Rmu_sc0004133.1_g000013 Rmu_sc0004139.1_g000002 Rmu_sc0004154.1_g000016 Rmu_sc0004165.1_g000088 Rmu_sc0004206.1_g000010 Rmu_sc0004212.1_g000006 Rmu_sc0004213.1_g000007 Rmu_sc0004331.1_g000018 Rmu_sc0004469.1_g000002 Rmu_sc0004565.1_g000004 Rmu_sc0004574.1_g000059 Rmu_sc0004591.1_g000009 Rmu_sc0004610.1_g000004 Rmu_sc0004610.1_g000005 Rmu_sc0004683.1_g000008 Rmu_sc0004723.1_g000003 Rmu_sc0004795.1_g000006 Rmu_sc0004825.1_g000009 Rmu_sc0004841.1_g000043 Rmu_sc0005039.1_g000005 Rmu_sc0005046.1_g000017 Rmu_sc0005173.1_g000012 Rmu_sc0005197.1_g000005 Rmu_sc0005255.1_g000043 Rmu_sc0005285.1_g000010 Rmu_sc0005310.1_g000051 Rmu_sc0005379.1_g000004 Rmu_sc0005385.1_g000015 Rmu_sc0005416.1_g000030 Rmu_sc0005652.1_g000015 Rmu_sc0005745.1_g000015 Rmu_sc0005748.1_g000007 Rmu_sc0005913.1_g000013 Rmu_sc0005950.1_g000016 Rmu_sc0006028.1_g000010 Rmu_sc0006153.1_g000025 Rmu_sc0006184.1_g000021 Rmu_sc0006240.1_g000001 Rmu_sc0006266.1_g000058 Rmu_sc0006323.1_g000013 Rmu_sc0006410.1_g000011 Rmu_sc0006452.1_g000010 Rmu_sc0006537.1_g000008 Rmu_sc0006669.1_g000011 Rmu_sc0006683.1_g000017 Rmu_sc0006691.1_g000004 Rmu_sc0006691.1_g000005 Rmu_sc0006743.1_g000004 Rmu_sc0006793.1_g000001 Rmu_sc0006793.1_g000002 Rmu_sc0006824.1_g000020 Rmu_sc0006959.1_g000018 Rmu_sc0007006.1_g000003 Rmu_sc0007130.1_g000009 Rmu_sc0007221.1_g000004 Rmu_sc0007222.1_g000004 Rmu_sc0007237.1_g000007 Rmu_sc0007292.1_g000013 Rmu_sc0007402.1_g000004 Rmu_sc0007475.1_g000009 Rmu_sc0007635.1_g000001 Rmu_sc0007742.1_g000023 Rmu_sc0007742.1_g000024 Rmu_sc0007802.1_g000033 Rmu_sc0007833.1_g000002 Rmu_sc0007994.1_g000002 Rmu_sc0007994.1_g000003 Rmu_sc0008079.1_g000002 Rmu_sc0008192.1_g000009 Rmu_sc0008529.1_g000021 Rmu_sc0008546.1_g000003 Rmu_sc0008564.1_g000001 Rmu_sc0008676.1_g000026 Rmu_sc0008713.1_g000017 Rmu_sc0008834.1_g000004 Rmu_sc0008967.1_g000017 Rmu_sc0009073.1_g000001 Rmu_sc0009449.1_g000002 Rmu_sc0009674.1_g000003 Rmu_sc0009725.1_g000006 Rmu_sc0010019.1_g000012 Rmu_sc0010132.1_g000034 Rmu_sc0010190.1_g000005 Rmu_sc0010221.1_g000003 Rmu_sc0010224.1_g000002 Rmu_sc0010242.1_g000005 Rmu_sc0010262.1_g000002 Rmu_sc0010338.1_g000011 Rmu_sc0010368.1_g000003 Rmu_sc0010533.1_g000001 Rmu_sc0011216.1_g000005 Rmu_sc0011272.1_g000003 Rmu_sc0011582.1_g000011 Rmu_sc0011585.1_g000002 Rmu_sc0011851.1_g000003 Rmu_sc0011851.1_g000006 Rmu_sc0011917.1_g000001 Rmu_sc0012031.1_g000005 Rmu_sc0012591.1_g000001 Rmu_sc0012856.1_g000014 Rmu_sc0013107.1_g000001 Rmu_sc0013545.1_g000001 Rmu_sc0013783.1_g000005 Rmu_sc0013801.1_g000004 Rmu_sc0013980.1_g000004 Rmu_sc0014006.1_g000006 Rmu_sc0014097.1_g000013 Rmu_sc0014404.1_g000011 Rmu_sc0015273.1_g000001 Rmu_sc0015957.1_g000003 Rmu_sc0015996.1_g000001 Rmu_sc0016141.1_g000011 Rmu_sc0016264.1_g000003 Rmu_sc0017005.1_g000007 Rmu_sc0017112.1_g000001 Rmu_sc0017245.1_g000001 Rmu_sc0018139.1_g000001 Rmu_sc0018325.1_g000007 Rmu_sc0018528.1_g000005 Rmu_sc0018646.1_g000003 Rmu_sc0019157.1_g000002 Rmu_sc0019342.1_g000001 Rmu_sc0019693.1_g000001 Rmu_sc0019742.1_g000003 Rmu_sc0020648.1_g000001 Rmu_sc0021123.1_g000002 Rmu_sc0022252.1_g000001 Rmu_sc0022252.1_g000002 Rmu_sc0023534.1_g000004 Rmu_sc0023853.1_g000003 Rmu_sc0024187.1_g000001 Rmu_sc0024395.1_g000001 Rmu_sc0024668.1_g000001 Rmu_sc0025262.1_g000001 Rmu_sc0026159.1_g000001 Rmu_sc0026159.1_g000002 Rmu_sc0026590.1_g000003 Rmu_sc0027036.1_g000008 Rmu_sc0027184.1_g000006 Rmu_sc0027690.1_g000002 Rmu_sc0030913.1_g000001 Rmu_sc0032471.1_g000002 Rmu_sc0033139.1_g000001 Rmu_sc0033765.1_g000002 Rmu_sc0034257.1_g000002 Rmu_sc0034655.1_g000001 Rmu_sc0035277.1_g000001 Rmu_sc0035833.1_g000001 Rmu_sc0037386.1_g000002 Rmu_sc0042113.1_g000001 Rmu_sc0042241.1_g000001 Rmu_ssc0000011.1_g000022 Rmu_ssc0000026.1_g000004 Rmu_ssc0000042.1_g000015 Rmu_ssc0000071.1_g000003 Rmu_ssc0000087.1_g000002 Rmu_ssc0000091.1_g000023 Rmu_ssc0000120.1_g000002 Rmu_ssc0000127.1_g000002 Rmu_ssc0000151.1_g000019 Rmu_ssc0000197.1_g000021 Rmu_ssc0000215.1_g000014 Rmu_ssc0000240.1_g000011 Rmu_ssc0000252.1_g000035 Rmu_ssc0000255.1_g000075 Rmu_ssc0000377.1_g000026 Rmu_ssc0000388.1_g000055 Rmu_ssc0000391.1_g000010 Rmu_ssc0000395.1_g000043 Rmu_ssc0000432.1_g000011 Rmu_ssc0000432.1_g000045 Rmu_ssc0000432.1_g000084
rosa_roxburghii Rroxscaffold_1G00003990 Rroxscaffold_1G00032350 Rroxscaffold_2G00104520 Rroxscaffold_2G00114410 Rroxscaffold_3G00261440 Rroxscaffold_5G00340750 Rroxscaffold_5G00344400 Rroxscaffold_5G00360340 Rroxscaffold_6G00400850 Rroxscaffold_7G00187980 Rroxscaffold_7G00191360
rosa_rugosa Rorug01G0062600 Rorug01G0235400 Rorug01G0286700 Rorug01G0286800 Rorug01G0332400 Rorug01G0332900 Rorug02G0087500 Rorug02G0110000.1 Rorug02G0114100 Rorug02G0262600 Rorug02G0330000 Rorug03G0232500 Rorug04G0022800 Rorug04G0038200 Rorug04G0114000 Rorug04G0158400 Rorug05G0168700 Rorug05G0171500 Rorug05G0206300 Rorug05G0225600 Rorug05G0256100 Rorug05G0263900 Rorug05G0317700 Rorug05G0341300 Rorug05G0389400 Rorug05G0393000 Rorug05G0393000 Rorug05G0511600 Rorug05G0586200 Rorug06G0124100 Rorug06G0124200 Rorug06G0509200 Rorug07G0197400 Rorug07G0198900 Rorug07G0289300 Rorug07G0289400.1 Rorug07G0294900
rosa_samantha Rh1AG125600 Rh1BG063800 Rh1BG063900 Rh1BG151300 Rh1BG172600 Rh1CG061300 Rh1DG100800 Rh1DG122100 Rh1DG202600 Rh2AG031700 Rh2AG179100 Rh2AG215600 Rh2AG226900 Rh2AG257200 Rh2AG296600 Rh2AG420600 Rh2AG501700 Rh2AG631000 Rh2BG203000 Rh2CG062400 Rh2CG263600 Rh2CG563700 Rh2DG031200 Rh2DG320600 Rh2DG572400 Rh3CG209000 Rh3CG215500 Rh3CG234400 Rh3CG280600 Rh3CG336200 Rh3DG334900 Rh3DG339300 Rh4AG215100 Rh4AG340100 Rh4BG070800 Rh4BG096700 Rh4BG224600 Rh4BG262700 Rh4CG004600 Rh4CG196600 Rh4CG196700 Rh4CG196800 Rh4DG342500 Rh5AG066500 Rh5AG248900 Rh5AG424500 Rh5AG432600 Rh5BG115800 Rh5BG169600 Rh5CG066900 Rh5CG221400 Rh5CG227600 Rh5CG257700 Rh5CG266400 Rh5CG284700 Rh5CG319500 Rh5CG363800 Rh5CG379900 Rh5DG123900 Rh5DG367800 Rh5DG472100 Rh5DG515000 Rh5DG518000 Rh5DG548100 Rh6AG085900 Rh6AG092100 Rh6CG188200 Rh6CG190400 Rh6DG188700 Rh6DG277200 Rh6DG459400 Rh7AG010600 Rh7AG225900 Rh7AG316900 Rh7AG321000 Rh7AG483600 Rh7BG142800 Rh7DG047400 Rh7DG114300 Rh7DG143800 Rh7DG233100 Rh7DG244700 Rh7DG254300 Rh7DG327600 Rh7DG345200 Rh7DG378400
rosa_wichuraiana Rw3G012560 Rw3G022840 Rw4G003390 Rw5G027110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 305
AccI GTMKAC 1 cut(s) 247
AciI CCGC 1 cut(s) 277
AcvI CACGTG 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 1 cut(s) 152
AjiI CACGTC 1 cut(s) 304
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
Alw26I GTCTC 2 cut(s) 110, 329
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 307
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 252
AsuII TTCGAA 1 cut(s) 272
AvaII GGWCC 1 cut(s) 307
AxyI CCTNAGG 1 cut(s) 189
BbrPI CACGTG 1 cut(s) 287
BbvI GCAGC 1 cut(s) 304
BccI CCATC 1 cut(s) 191
BcnI CCSGG 1 cut(s) 170
BcoDI GTCTC 2 cut(s) 110, 329
BfaI CTAG 1 cut(s) 77
BglII AGATCT 1 cut(s) 232
BisI GCNGC 2 cut(s) 278, 318
BlpI GCTNAGC 1 cut(s) 126
BlsI GCNGC 2 cut(s) 279, 319
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 307
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 2 cut(s) 167, 309
BmrFI CCNGG 1 cut(s) 170
Bpu1102I GCTNAGC 1 cut(s) 126
Bpu14I TTCGAA 1 cut(s) 272
BpuMI CCSGG 1 cut(s) 170
BsaAI YACGTR 1 cut(s) 287
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse21I CCTNAGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMII CTCAG 3 cut(s) 105, 140, 203
BseXI GCAGC 1 cut(s) 304
BshFI GGCC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 169
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 2 cut(s) 110, 329
BsmFI GGGAC 1 cut(s) 293
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 1 cut(s) 94
Bso31I GGTCTC 1 cut(s) 110
Bsp119I TTCGAA 1 cut(s) 272
Bsp143I GATC 3 cut(s) 73, 102, 232
Bsp1720I GCTNAGC 1 cut(s) 126
BspACI CCGC 1 cut(s) 277
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 3 cut(s) 106, 139, 202
BspLI GGNNCC 2 cut(s) 167, 309
BspT104I TTCGAA 1 cut(s) 272
BspTNI GGTCTC 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 3 cut(s) 73, 102, 232
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 2 cut(s) 153, 332
BstBAI YACGTR 1 cut(s) 287
BstBI TTCGAA 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 4 cut(s) 87, 114, 126, 189
BstKTI GATC 3 cut(s) 76, 105, 235
BstMAI GTCTC 2 cut(s) 110, 329
BstMBI GATC 3 cut(s) 73, 102, 232
BstNSI RCATGY 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
Bsu36I CCTNAGG 1 cut(s) 189
BsuRI GGCC 1 cut(s) 94
BtrI CACGTC 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 307
CviAII CATG 3 cut(s) 8, 62, 239
CviJI RGCY 3 cut(s) 86, 94, 280
CviKI_1 RGCY 3 cut(s) 86, 94, 280
DdeI CTNAG 4 cut(s) 87, 114, 126, 189
DpnI GATC 3 cut(s) 75, 104, 234
DpnII GATC 3 cut(s) 73, 102, 232
DrdI GACNNNNNNGTC 1 cut(s) 305
DseDI GACNNNNNNGTC 1 cut(s) 305
Eam1104I CTCTTC 2 cut(s) 153, 332
EarI CTCTTC 2 cut(s) 153, 332
Eco31I GGTCTC 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 307
Eco72I CACGTG 1 cut(s) 287
Eco81I CCTNAGG 1 cut(s) 189
FaeI CATG 3 cut(s) 11, 65, 242
FaiI YATR 5 cut(s) 9, 63, 181, 240, 256
FaqI GGGAC 1 cut(s) 293
FatI CATG 3 cut(s) 7, 61, 238
FblI GTMKAC 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 278, 318
Fsp4HI GCNGC 2 cut(s) 278, 318
FspBI CTAG 1 cut(s) 77
GluI GCNGC 2 cut(s) 278, 318
HaeIII GGCC 1 cut(s) 94
HapII CCGG 1 cut(s) 169
Hin1II CATG 3 cut(s) 11, 65, 242
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 1 cut(s) 143
HpaI GTTAAC 1 cut(s) 46
HpaII CCGG 1 cut(s) 169
HphI GGTGA 1 cut(s) 252
Hpy166II GTNNAC 2 cut(s) 46, 248
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 2 cut(s) 46, 248
Hpy99I CGWCG 2 cut(s) 302, 305
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4IV ACGT 2 cut(s) 286, 303
HpyCH4V TGCA 3 cut(s) 33, 230, 320
HpyF3I CTNAG 4 cut(s) 87, 114, 126, 189
HpySE526I ACGT 2 cut(s) 286, 303
Hsp92II CATG 3 cut(s) 11, 65, 242
KspAI GTTAAC 1 cut(s) 46
Kzo9I GATC 3 cut(s) 73, 102, 232
LpnPI CCDG 5 cut(s) 5, 116, 176, 182, 191
Lsp1109I GCAGC 1 cut(s) 304
MaeI CTAG 1 cut(s) 77
MaeII ACGT 2 cut(s) 286, 303
MalI GATC 3 cut(s) 75, 104, 234
MboI GATC 3 cut(s) 73, 102, 232
MboII GAAGA 4 cut(s) 140, 168, 206, 319
MfeI CAATTG 1 cut(s) 265
MflI RGATCY 1 cut(s) 232
MluCI AATT 3 cut(s) 28, 175, 265
MnlI CCTC 3 cut(s) 29, 84, 198
MseI TTAA 1 cut(s) 45
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 170
MunI CAATTG 1 cut(s) 265
Mva1269I GAATGC 1 cut(s) 232
NciI CCSGG 1 cut(s) 170
NdeII GATC 3 cut(s) 73, 102, 232
NlaIII CATG 3 cut(s) 11, 65, 242
NlaIV GGNNCC 2 cut(s) 167, 309
NmeAIII GCCGAG 1 cut(s) 120
NspI RCATGY 1 cut(s) 65
NspV TTCGAA 1 cut(s) 272
PctI GAATGC 1 cut(s) 232
PfeI GAWTC 1 cut(s) 143
PflFI GACNNNGTC 1 cut(s) 305
PkrI GCNGC 2 cut(s) 279, 319
PmaCI CACGTG 1 cut(s) 287
PmlI CACGTG 1 cut(s) 287
Ppu21I YACGTR 1 cut(s) 287
PspCI CACGTG 1 cut(s) 287
PspN4I GGNNCC 2 cut(s) 167, 309
PspPI GGNCC 1 cut(s) 307
PsuI RGATCY 1 cut(s) 232
PsyI GACNNNGTC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 2 cut(s) 278, 318
Sau3AI GATC 3 cut(s) 73, 102, 232
Sau96I GGNCC 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 170
SetI ASST 4 cut(s) 40, 88, 289, 306
SfuI TTCGAA 1 cut(s) 272
SinI GGWCC 1 cut(s) 307
Sse9I AATT 3 cut(s) 28, 175, 265
SsiI CCGC 1 cut(s) 277
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 50
TaiI ACGT 2 cut(s) 289, 306
TaqI TCGA 1 cut(s) 272
TasI AATT 3 cut(s) 28, 175, 265
TauI GCSGC 1 cut(s) 280
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 1 cut(s) 319
Tth111I GACNNNGTC 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 307
XceI RCATGY 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 247
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.