Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 1957 |
| AciI | CCGC | 4 cut(s) | 119, 1609, 1626, 1863 |
| AclWI | GGATC | 5 cut(s) | 606, 965, 1599, 1942, 1949 |
| AcsI | RAATTY | 4 cut(s) | 96, 829, 876, 891 |
| AfaI | GTAC | 3 cut(s) | 371, 528, 1635 |
| AfeI | AGCGCT | 1 cut(s) | 263 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 446, 1265, 1625, 1643, 1845, 1901, 1964 |
| AflIII | ACRYGT | 2 cut(s) | 930, 1390 |
| AgsI | TTSAA | 7 cut(s) | 338, 491, 542, 623, 829, 963, 1451 |
| AjnI | CCWGG | 3 cut(s) | 558, 1714, 1900 |
| AluBI | AGCT | 8 cut(s) | 251, 653, 923, 1007, 1367, 1424, 1454, 1884 |
| AluI | AGCT | 8 cut(s) | 251, 653, 923, 1007, 1367, 1424, 1454, 1884 |
| Alw21I | GWGCWC | 2 cut(s) | 67, 253 |
| Alw26I | GTCTC | 3 cut(s) | 460, 921, 1338 |
| AlwI | GGATC | 5 cut(s) | 606, 965, 1599, 1942, 1949 |
| Aor13HI | TCCGGA | 1 cut(s) | 1957 |
| Aor51HI | AGCGCT | 1 cut(s) | 263 |
| AoxI | GGCC | 2 cut(s) | 1778, 1925 |
| ApeKI | GCWGC | 5 cut(s) | 5, 110, 158, 391, 1623 |
| ApoI | RAATTY | 4 cut(s) | 96, 829, 876, 891 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1868, 1900 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 756, 1830 |
| AspLEI | GCGC | 2 cut(s) | 10, 264 |
| AspS9I | GGNCC | 3 cut(s) | 233, 789, 1925 |
| AsuHPI | GGTGA | 3 cut(s) | 461, 1202, 1658 |
| AsuII | TTCGAA | 1 cut(s) | 806 |
| AvaII | GGWCC | 2 cut(s) | 233, 789 |
| BanII | GRGCYC | 1 cut(s) | 253 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1431, 1463 |
| BbsI | GAAGAC | 1 cut(s) | 225 |
| Bbv12I | GWGCWC | 2 cut(s) | 67, 253 |
| BbvI | GCAGC | 5 cut(s) | 17, 97, 145, 378, 1635 |
| BccI | CCATC | 6 cut(s) | 349, 629, 720, 830, 1032, 1286 |
| BceAI | ACGGC | 4 cut(s) | 50, 132, 1756, 1876 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 791, 825, 1868, 1902 |
| BciT130I | CCWGG | 3 cut(s) | 560, 1716, 1902 |
| BcoDI | GTCTC | 3 cut(s) | 460, 921, 1338 |
| BfaI | CTAG | 6 cut(s) | 228, 293, 924, 1098, 1502, 1620 |
| BfoI | RGCGCY | 2 cut(s) | 11, 265 |
| BisI | GCNGC | 8 cut(s) | 6, 111, 159, 392, 1610, 1624, 1627, 1864 |
| BlsI | GCNGC | 8 cut(s) | 7, 112, 160, 393, 1611, 1625, 1628, 1865 |
| BmcAI | AGTACT | 1 cut(s) | 371 |
| Bme1390I | CCNGG | 3 cut(s) | 560, 1716, 1902 |
| Bme18I | GGWCC | 2 cut(s) | 233, 789 |
| BmgT120I | GGNCC | 3 cut(s) | 233, 789, 1925 |
| BmiI | GGNNCC | 3 cut(s) | 234, 799, 1297 |
| BmrFI | CCNGG | 3 cut(s) | 560, 1716, 1902 |
| BmsI | GCATC | 7 cut(s) | 423, 442, 493, 1459, 1561, 1639, 1752 |
| BpiI | GAAGAC | 1 cut(s) | 225 |
| BpmI | CTGGAG | 3 cut(s) | 210, 542, 1539 |
| Bpu10I | CCTNAGC | 1 cut(s) | 277 |
| Bpu14I | TTCGAA | 1 cut(s) | 806 |
| BpuEI | CTTGAG | 2 cut(s) | 1302, 1556 |
| BsaBI | GATNNNNATC | 2 cut(s) | 639, 1590 |
| BsaJI | CCNNGG | 4 cut(s) | 239, 1715, 1738, 1901 |
| BsaWI | WCCGGW | 1 cut(s) | 1957 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 446, 1265, 1625, 1643, 1845, 1901, 1964 |
| Bse1I | ACTGG | 1 cut(s) | 961 |
| Bse8I | GATNNNNATC | 2 cut(s) | 639, 1590 |
| BseAI | TCCGGA | 1 cut(s) | 1957 |
| BseBI | CCWGG | 3 cut(s) | 560, 1716, 1902 |
| BseDI | CCNNGG | 4 cut(s) | 239, 1715, 1738, 1901 |
| BseGI | GGATG | 8 cut(s) | 79, 341, 397, 438, 508, 1043, 1297, 1576 |
| BseJI | GATNNNNATC | 2 cut(s) | 639, 1590 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 446, 1265, 1625, 1643, 1845, 1901, 1964 |
| BseMII | CTCAG | 5 cut(s) | 476, 1232, 1364, 1740, 1746 |
| BseNI | ACTGG | 1 cut(s) | 961 |
| BseRI | GAGGAG | 2 cut(s) | 228, 1861 |
| BseXI | GCAGC | 5 cut(s) | 17, 97, 145, 378, 1635 |
| BsgI | GTGCAG | 1 cut(s) | 265 |
| BshFI | GGCC | 2 cut(s) | 1780, 1927 |
| BsiHKAI | GWGCWC | 2 cut(s) | 67, 253 |
| BsiSI | CCGG | 3 cut(s) | 11, 1839, 1958 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 446, 1265, 1625, 1643, 1845, 1901, 1964 |
| BsmAI | GTCTC | 3 cut(s) | 460, 921, 1338 |
| BsmI | GAATGC | 1 cut(s) | 814 |
| BsnI | GGCC | 2 cut(s) | 1780, 1927 |
| Bsp119I | TTCGAA | 1 cut(s) | 806 |
| Bsp1286I | GDGCHC | 2 cut(s) | 67, 253 |
| Bsp13I | TCCGGA | 1 cut(s) | 1957 |
| Bsp143I | GATC | 8 cut(s) | 129, 611, 640, 970, 1591, 1820, 1934, 1954 |
| BspACI | CCGC | 4 cut(s) | 119, 1609, 1626, 1863 |
| BspANI | GGCC | 2 cut(s) | 1780, 1927 |
| BspCNI | CTCAG | 5 cut(s) | 475, 1233, 1363, 1741, 1747 |
| BspEI | TCCGGA | 1 cut(s) | 1957 |
| BspLI | GGNNCC | 3 cut(s) | 234, 799, 1297 |
| BspPI | GGATC | 5 cut(s) | 606, 965, 1599, 1942, 1949 |
| BspT104I | TTCGAA | 1 cut(s) | 806 |
| BsrI | ACTGG | 1 cut(s) | 961 |
| BssECI | CCNNGG | 4 cut(s) | 239, 1715, 1738, 1901 |
| BssMI | GATC | 8 cut(s) | 129, 611, 640, 970, 1591, 1820, 1934, 1954 |
| Bst2UI | CCWGG | 3 cut(s) | 560, 1716, 1902 |
| Bst4CI | ACNGT | 5 cut(s) | 104, 369, 374, 1112, 1251 |
| Bst6I | CTCTTC | 1 cut(s) | 1410 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 950 |
| BstBI | TTCGAA | 1 cut(s) | 806 |
| BstC8I | GCNNGC | 3 cut(s) | 273, 1044, 1659 |
| BstDSI | CCRYGG | 1 cut(s) | 1738 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1899 |
| BstF5I | GGATG | 8 cut(s) | 79, 341, 397, 438, 508, 1043, 1297, 1576 |
| BstH2I | RGCGCY | 2 cut(s) | 11, 265 |
| BstHHI | GCGC | 2 cut(s) | 10, 264 |
| BstKTI | GATC | 8 cut(s) | 132, 614, 643, 973, 1594, 1823, 1937, 1957 |
| BstMAI | GTCTC | 3 cut(s) | 460, 921, 1338 |
| BstMBI | GATC | 8 cut(s) | 129, 611, 640, 970, 1591, 1820, 1934, 1954 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 116, 268, 950, 1048, 1373, 1658, 1863, 1924 |
| BstNI | CCWGG | 3 cut(s) | 560, 1716, 1902 |
| BstNSI | RCATGY | 4 cut(s) | 934, 948, 1394, 1661 |
| BstSCI | CCNGG | 3 cut(s) | 558, 1714, 1900 |
| BstV1I | GCAGC | 5 cut(s) | 17, 97, 145, 378, 1635 |
| BstV2I | GAAGAC | 1 cut(s) | 225 |
| BstX2I | RGATCY | 3 cut(s) | 611, 1934, 1954 |
| BstYI | RGATCY | 3 cut(s) | 611, 1934, 1954 |
| BsuRI | GGCC | 2 cut(s) | 1780, 1927 |
| BtgI | CCRYGG | 1 cut(s) | 1738 |
| BtgZI | GCGATG | 2 cut(s) | 470, 1364 |
| BtsCI | GGATG | 8 cut(s) | 79, 341, 397, 438, 508, 1043, 1297, 1576 |
| BtsI | GCAGTG | 1 cut(s) | 1053 |
| BtsIMutI | CAGTG | 3 cut(s) | 1053, 1256, 1746 |
| Cac8I | GCNNGC | 3 cut(s) | 273, 1044, 1659 |
| CfoI | GCGC | 2 cut(s) | 10, 264 |
| Cfr13I | GGNCC | 3 cut(s) | 233, 789, 1925 |
| CseI | GACGC | 1 cut(s) | 554 |
| Csp6I | GTAC | 3 cut(s) | 370, 527, 1634 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1831, 1866 |
| CviAII | CATG | 9 cut(s) | 164, 931, 945, 1384, 1391, 1409, 1550, 1579, 1658 |
| CviQI | GTAC | 3 cut(s) | 370, 527, 1634 |
| DpnI | GATC | 8 cut(s) | 131, 613, 642, 972, 1593, 1822, 1936, 1956 |
| DpnII | GATC | 8 cut(s) | 129, 611, 640, 970, 1591, 1820, 1934, 1954 |
| DraI | TTTAAA | 1 cut(s) | 1107 |
| Eam1104I | CTCTTC | 1 cut(s) | 1410 |
| EarI | CTCTTC | 1 cut(s) | 1410 |
| EciI | GGCGGA | 1 cut(s) | 134 |
| Ecl136II | GAGCTC | 1 cut(s) | 251 |
| Eco24I | GRGCYC | 1 cut(s) | 253 |
| Eco47I | GGWCC | 2 cut(s) | 233, 789 |
| Eco47III | AGCGCT | 1 cut(s) | 263 |
| Eco53kI | GAGCTC | 1 cut(s) | 251 |
| EcoICRI | GAGCTC | 1 cut(s) | 251 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1899 |
| EcoO109I | RGGNCCY | 1 cut(s) | 233 |
| EcoRI | GAATTC | 1 cut(s) | 829 |
| EcoRII | CCWGG | 3 cut(s) | 558, 1714, 1900 |
| EcoT22I | ATGCAT | 1 cut(s) | 1461 |
| EcoT38I | GRGCYC | 1 cut(s) | 253 |
| FaeI | CATG | 9 cut(s) | 167, 934, 948, 1387, 1394, 1412, 1553, 1582, 1661 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1181, 1213 |
| FatI | CATG | 9 cut(s) | 163, 930, 944, 1383, 1390, 1408, 1549, 1578, 1657 |
| FauNDI | CATATG | 1 cut(s) | 39 |
| Fnu4HI | GCNGC | 8 cut(s) | 6, 111, 159, 392, 1610, 1624, 1627, 1864 |
| FokI | GGATG | 8 cut(s) | 86, 328, 384, 445, 515, 1050, 1304, 1583 |
| FriOI | GRGCYC | 1 cut(s) | 253 |
| Fsp4HI | GCNGC | 8 cut(s) | 6, 111, 159, 392, 1610, 1624, 1627, 1864 |
| FspBI | CTAG | 6 cut(s) | 228, 293, 924, 1098, 1502, 1620 |
| GlaI | GCGC | 2 cut(s) | 9, 263 |
| GluI | GCNGC | 8 cut(s) | 6, 111, 159, 392, 1610, 1624, 1627, 1864 |
| GsuI | CTGGAG | 3 cut(s) | 210, 542, 1539 |
| HaeII | RGCGCY | 2 cut(s) | 11, 265 |
| HaeIII | GGCC | 2 cut(s) | 1780, 1927 |
| HapII | CCGG | 3 cut(s) | 11, 1839, 1958 |
| HgaI | GACGC | 1 cut(s) | 554 |
| HhaI | GCGC | 2 cut(s) | 10, 264 |
| Hin1II | CATG | 9 cut(s) | 167, 934, 948, 1387, 1394, 1412, 1553, 1582, 1661 |
| Hin6I | GCGC | 2 cut(s) | 8, 262 |
| HinP1I | GCGC | 2 cut(s) | 8, 262 |
| HincII | GTYRAC | 2 cut(s) | 331, 1124 |
| HindII | GTYRAC | 2 cut(s) | 331, 1124 |
| HpaI | GTTAAC | 1 cut(s) | 331 |
| HpaII | CCGG | 3 cut(s) | 11, 1839, 1958 |
| HphI | GGTGA | 3 cut(s) | 461, 1202, 1658 |
| Hpy166II | GTNNAC | 2 cut(s) | 331, 1124 |
| Hpy8I | GTNNAC | 2 cut(s) | 331, 1124 |
| Hpy99I | CGWCG | 1 cut(s) | 684 |
| HpyAV | CCTTC | 7 cut(s) | 713, 985, 1207, 1224, 1309, 1313, 1672 |
| HpyCH4III | ACNGT | 5 cut(s) | 104, 369, 374, 1112, 1251 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 116, 268, 950, 1048, 1373, 1658, 1863, 1924 |
| Hsp92II | CATG | 9 cut(s) | 167, 934, 948, 1387, 1394, 1412, 1553, 1582, 1661 |
| HspAI | GCGC | 2 cut(s) | 8, 262 |
| Kpn2I | TCCGGA | 1 cut(s) | 1957 |
| KspAI | GTTAAC | 1 cut(s) | 331 |
| Kzo9I | GATC | 8 cut(s) | 129, 611, 640, 970, 1591, 1820, 1934, 1954 |
| LmnI | GCTCC | 2 cut(s) | 70, 1558 |
| Lsp1109I | GCAGC | 5 cut(s) | 17, 97, 145, 378, 1635 |
| LweI | GCATC | 7 cut(s) | 423, 442, 493, 1459, 1561, 1639, 1752 |
| MaeI | CTAG | 6 cut(s) | 228, 293, 924, 1098, 1502, 1620 |
| MaeIII | GTNAC | 4 cut(s) | 644, 1312, 1761, 1874 |
| MalI | GATC | 8 cut(s) | 131, 613, 642, 972, 1593, 1822, 1936, 1956 |
| MboI | GATC | 8 cut(s) | 129, 611, 640, 970, 1591, 1820, 1934, 1954 |
| MboII | GAAGA | 9 cut(s) | 164, 230, 554, 1049, 1397, 1439, 1701, 1791, 1929 |
| MfeI | CAATTG | 2 cut(s) | 711, 1272 |
| MflI | RGATCY | 3 cut(s) | 611, 1934, 1954 |
| MhlI | GDGCHC | 2 cut(s) | 67, 253 |
| MlyI | GAGTC | 8 cut(s) | 233, 454, 694, 1145, 1340, 1363, 1529, 1766 |
| MmeI | TCCRAC | 2 cut(s) | 410, 480 |
| Mph1103I | ATGCAT | 1 cut(s) | 1461 |
| MroI | TCCGGA | 1 cut(s) | 1957 |
| MroXI | GAANNNNTTC | 2 cut(s) | 756, 1830 |
| MseI | TTAA | 8 cut(s) | 198, 330, 378, 707, 1079, 1106, 1329, 1682 |
| MspA1I | CMGCKG | 1 cut(s) | 1626 |
| MspI | CCGG | 3 cut(s) | 11, 1839, 1958 |
| MspR9I | CCNGG | 3 cut(s) | 560, 1716, 1902 |
| MunI | CAATTG | 2 cut(s) | 711, 1272 |
| Mva1269I | GAATGC | 1 cut(s) | 814 |
| MvaI | CCWGG | 3 cut(s) | 560, 1716, 1902 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 116, 268, 950, 1048, 1373, 1658, 1863, 1924 |
| NdeI | CATATG | 1 cut(s) | 39 |
| NdeII | GATC | 8 cut(s) | 129, 611, 640, 970, 1591, 1820, 1934, 1954 |
| NlaIII | CATG | 9 cut(s) | 167, 934, 948, 1387, 1394, 1412, 1553, 1582, 1661 |
| NlaIV | GGNNCC | 3 cut(s) | 234, 799, 1297 |
| NmeAIII | GCCGAG | 1 cut(s) | 1633 |
| NmuCI | GTSAC | 2 cut(s) | 1312, 1874 |
| NsiI | ATGCAT | 1 cut(s) | 1461 |
| NspI | RCATGY | 4 cut(s) | 934, 948, 1394, 1661 |
| NspV | TTCGAA | 1 cut(s) | 806 |
| PaeI | GCATGC | 1 cut(s) | 1661 |
| PciI | ACATGT | 2 cut(s) | 930, 1390 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 452, 685 |
| PctI | GAATGC | 1 cut(s) | 814 |
| PdmI | GAANNNNTTC | 2 cut(s) | 756, 1830 |
| PfeI | GAWTC | 3 cut(s) | 487, 803, 1788 |
| PflFI | GACNNNGTC | 1 cut(s) | 684 |
| PkrI | GCNGC | 8 cut(s) | 7, 112, 160, 393, 1611, 1625, 1628, 1865 |
| PleI | GAGTC | 8 cut(s) | 232, 454, 693, 1144, 1340, 1362, 1528, 1765 |
| PpsI | GAGTC | 8 cut(s) | 232, 454, 693, 1144, 1340, 1362, 1528, 1765 |
| PpuMI | RGGWCCY | 1 cut(s) | 233 |
| PscI | ACATGT | 2 cut(s) | 930, 1390 |
| Psp124BI | GAGCTC | 1 cut(s) | 253 |
| Psp5II | RGGWCCY | 1 cut(s) | 233 |
| Psp6I | CCWGG | 3 cut(s) | 558, 1714, 1900 |
| PspGI | CCWGG | 3 cut(s) | 558, 1714, 1900 |
| PspN4I | GGNNCC | 3 cut(s) | 234, 799, 1297 |
| PspPI | GGNCC | 3 cut(s) | 233, 789, 1925 |
| PspPPI | RGGWCCY | 1 cut(s) | 233 |
| PsuI | RGATCY | 3 cut(s) | 611, 1934, 1954 |
| PsyI | GACNNNGTC | 1 cut(s) | 684 |
| RsaI | GTAC | 3 cut(s) | 371, 528, 1635 |
| RsaNI | GTAC | 3 cut(s) | 370, 527, 1634 |
| SacI | GAGCTC | 1 cut(s) | 253 |
| SaqAI | TTAA | 8 cut(s) | 198, 330, 378, 707, 1079, 1106, 1329, 1682 |
| SatI | GCNGC | 8 cut(s) | 6, 111, 159, 392, 1610, 1624, 1627, 1864 |
| Sau3AI | GATC | 8 cut(s) | 129, 611, 640, 970, 1591, 1820, 1934, 1954 |
| Sau96I | GGNCC | 3 cut(s) | 233, 789, 1925 |
| ScaI | AGTACT | 1 cut(s) | 371 |
| SchI | GAGTC | 8 cut(s) | 233, 454, 694, 1145, 1340, 1363, 1529, 1766 |
| ScrFI | CCNGG | 3 cut(s) | 560, 1716, 1902 |
| SduI | GDGCHC | 2 cut(s) | 67, 253 |
| SfaNI | GCATC | 7 cut(s) | 423, 442, 493, 1459, 1561, 1639, 1752 |
| SfuI | TTCGAA | 1 cut(s) | 806 |
| SinI | GGWCC | 2 cut(s) | 233, 789 |
| SmlI | CTYRAG | 2 cut(s) | 1317, 1535 |
| SmoI | CTYRAG | 2 cut(s) | 1317, 1535 |
| SphI | GCATGC | 1 cut(s) | 1661 |
| SsiI | CCGC | 4 cut(s) | 119, 1609, 1626, 1863 |
| SspI | AATATT | 2 cut(s) | 142, 781 |
| SspMI | CTAG | 6 cut(s) | 228, 293, 924, 1098, 1502, 1620 |
| SstI | GAGCTC | 1 cut(s) | 253 |
| StyD4I | CCNGG | 3 cut(s) | 558, 1714, 1900 |
| TaaI | ACNGT | 5 cut(s) | 104, 369, 374, 1112, 1251 |
| TaqI | TCGA | 9 cut(s) | 318, 679, 688, 806, 880, 1172, 1342, 1771, 1812 |
| TaqII | GACCGA | 1 cut(s) | 777 |
| TatI | WGTACW | 1 cut(s) | 369 |
| TauI | GCSGC | 3 cut(s) | 1612, 1629, 1866 |
| TfiI | GAWTC | 3 cut(s) | 487, 803, 1788 |
| Tru1I | TTAA | 8 cut(s) | 198, 330, 378, 707, 1079, 1106, 1329, 1682 |
| Tru9I | TTAA | 8 cut(s) | 198, 330, 378, 707, 1079, 1106, 1329, 1682 |
| TscAI | CASTG | 3 cut(s) | 1053, 1256, 1753 |
| TseFI | GTSAC | 2 cut(s) | 1312, 1874 |
| TseI | GCWGC | 5 cut(s) | 5, 110, 158, 391, 1623 |
| Tsp45I | GTSAC | 2 cut(s) | 1312, 1874 |
| TspGWI | ACGGA | 1 cut(s) | 697 |
| TspRI | CASTG | 3 cut(s) | 1053, 1256, 1753 |
| Tth111I | GACNNNGTC | 1 cut(s) | 684 |
| VpaK11BI | GGWCC | 2 cut(s) | 233, 789 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1899 |
| XapI | RAATTY | 4 cut(s) | 96, 829, 876, 891 |
| XceI | RCATGY | 4 cut(s) | 934, 948, 1394, 1661 |
| XmnI | GAANNNNTTC | 2 cut(s) | 756, 1830 |
| XspI | CTAG | 6 cut(s) | 228, 293, 924, 1098, 1502, 1620 |
| ZrmI | AGTACT | 1 cut(s) | 371 |
| Zsp2I | ATGCAT | 1 cut(s) | 1461 |