ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 65 |
| Acc16I | TGCGCA | 1 cut(s) | 14 |
| Acc36I | ACCTGC | 1 cut(s) | 1346 |
| AccB1I | GGYRCC | 2 cut(s) | 232, 1066 |
| AccBSI | CCGCTC | 1 cut(s) | 175 |
| AccI | GTMKAC | 2 cut(s) | 576, 1259 |
| AccII | CGCG | 2 cut(s) | 23, 985 |
| AciI | CCGC | 5 cut(s) | 175, 545, 744, 985, 1728 |
| AclWI | GGATC | 2 cut(s) | 363, 1045 |
| AcsI | RAATTY | 1 cut(s) | 252 |
| AcuI | CTGAAG | 2 cut(s) | 155, 414 |
| AcyI | GRCGYC | 2 cut(s) | 62, 1067 |
| AdeI | CACNNNGTG | 2 cut(s) | 1163, 1737 |
| AfaI | GTAC | 7 cut(s) | 320, 474, 1016, 1109, 1216, 1371, 1592 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 482, 976 |
| AgsI | TTSAA | 1 cut(s) | 1453 |
| AhlI | ACTAGT | 1 cut(s) | 1613 |
| AjnI | CCWGG | 3 cut(s) | 1069, 1159, 1658 |
| Alw21I | GWGCWC | 3 cut(s) | 1137, 1168, 1725 |
| Alw26I | GTCTC | 3 cut(s) | 53, 183, 405 |
| Alw44I | GTGCAC | 1 cut(s) | 1164 |
| AlwI | GGATC | 2 cut(s) | 363, 1045 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1223 |
| Ama87I | CYCGRG | 1 cut(s) | 975 |
| AoxI | GGCC | 2 cut(s) | 1072, 1678 |
| ApaLI | GTGCAC | 1 cut(s) | 1164 |
| ApeKI | GCWGC | 2 cut(s) | 10, 872 |
| ApoI | RAATTY | 1 cut(s) | 252 |
| AseI | ATTAAT | 1 cut(s) | 1290 |
| AspA2I | CCTAGG | 1 cut(s) | 236 |
| AspLEI | GCGC | 3 cut(s) | 10, 15, 1069 |
| AspS9I | GGNCC | 4 cut(s) | 101, 369, 550, 1124 |
| AsuC2I | CCSGG | 1 cut(s) | 533 |
| AsuHPI | GGTGA | 5 cut(s) | 521, 593, 874, 943, 1724 |
| AsuII | TTCGAA | 2 cut(s) | 688, 919 |
| AvaI | CYCGRG | 1 cut(s) | 975 |
| AvaII | GGWCC | 4 cut(s) | 101, 369, 550, 1124 |
| AvrII | CCTAGG | 1 cut(s) | 236 |
| BaeGI | GKGCMC | 1 cut(s) | 1168 |
| BanI | GGYRCC | 2 cut(s) | 232, 1066 |
| BanII | GRGCYC | 1 cut(s) | 1725 |
| Bbv12I | GWGCWC | 3 cut(s) | 1137, 1168, 1725 |
| BbvI | GCAGC | 1 cut(s) | 859 |
| BccI | CCATC | 8 cut(s) | 271, 562, 633, 1062, 1073, 1185, 1542, 1709 |
| BceAI | ACGGC | 1 cut(s) | 1155 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 806, 840 |
| BciT130I | CCWGG | 3 cut(s) | 1071, 1161, 1660 |
| BclI | TGATCA | 1 cut(s) | 733 |
| BcnI | CCSGG | 1 cut(s) | 533 |
| BcoDI | GTCTC | 3 cut(s) | 53, 183, 405 |
| BcuI | ACTAGT | 1 cut(s) | 1613 |
| BfaI | CTAG | 6 cut(s) | 237, 698, 1076, 1334, 1614, 1706 |
| BfmI | CTRYAG | 1 cut(s) | 1295 |
| BfoI | RGCGCY | 2 cut(s) | 11, 1070 |
| BfuAI | ACCTGC | 1 cut(s) | 1346 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 241 |
| BglII | AGATCT | 1 cut(s) | 1518 |
| BisI | GCNGC | 5 cut(s) | 11, 176, 745, 873, 1729 |
| BlnI | CCTAGG | 1 cut(s) | 236 |
| BlpI | GCTNAGC | 1 cut(s) | 1724 |
| BlsI | GCNGC | 5 cut(s) | 12, 177, 746, 874, 1730 |
| BmcAI | AGTACT | 1 cut(s) | 1109 |
| Bme1390I | CCNGG | 4 cut(s) | 533, 1071, 1161, 1660 |
| Bme18I | GGWCC | 4 cut(s) | 101, 369, 550, 1124 |
| BmeT110I | CYCGRG | 1 cut(s) | 975 |
| BmgT120I | GGNCC | 4 cut(s) | 101, 369, 550, 1124 |
| BmiI | GGNNCC | 2 cut(s) | 234, 1068 |
| BmrFI | CCNGG | 4 cut(s) | 533, 1071, 1161, 1660 |
| BmsI | GCATC | 2 cut(s) | 812, 859 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 232, 264 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1724 |
| Bpu14I | TTCGAA | 2 cut(s) | 688, 919 |
| BpuMI | CCSGG | 1 cut(s) | 533 |
| Bsa29I | ATCGAT | 1 cut(s) | 73 |
| BsaAI | YACGTR | 1 cut(s) | 713 |
| BsaHI | GRCGYC | 2 cut(s) | 62, 1067 |
| BsaJI | CCNNGG | 6 cut(s) | 236, 372, 553, 974, 1062, 1658 |
| BsaWI | WCCGGW | 1 cut(s) | 1419 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1158, 1188 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 482, 976 |
| Bse118I | RCCGGY | 1 cut(s) | 875 |
| Bse1I | ACTGG | 5 cut(s) | 147, 201, 505, 1115, 1348 |
| Bse3DI | GCAATG | 2 cut(s) | 279, 443 |
| BseBI | CCWGG | 3 cut(s) | 1071, 1161, 1660 |
| BseCI | ATCGAT | 1 cut(s) | 73 |
| BseDI | CCNNGG | 6 cut(s) | 236, 372, 553, 974, 1062, 1658 |
| BseGI | GGATG | 5 cut(s) | 644, 803, 1054, 1089, 1553 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 482, 976 |
| BseMI | GCAATG | 2 cut(s) | 279, 443 |
| BseMII | CTCAG | 5 cut(s) | 127, 207, 491, 915, 1738 |
| BseNI | ACTGG | 5 cut(s) | 147, 201, 505, 1115, 1348 |
| BseRI | GAGGAG | 2 cut(s) | 71, 1040 |
| BseSI | GKGCMC | 1 cut(s) | 1168 |
| BseXI | GCAGC | 1 cut(s) | 859 |
| Bsh1236I | CGCG | 2 cut(s) | 23, 985 |
| BshFI | GGCC | 2 cut(s) | 1074, 1680 |
| BshNI | GGYRCC | 2 cut(s) | 232, 1066 |
| BshVI | ATCGAT | 1 cut(s) | 73 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1137, 1168, 1725 |
| BsiHKCI | CYCGRG | 1 cut(s) | 975 |
| BsiSI | CCGG | 3 cut(s) | 533, 876, 1420 |
| BslFI | GGGAC | 3 cut(s) | 399, 1001, 1072 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 482, 976 |
| BsmAI | GTCTC | 3 cut(s) | 53, 183, 405 |
| BsmBI | CGTCTC | 2 cut(s) | 53, 405 |
| BsmFI | GGGAC | 3 cut(s) | 399, 1001, 1072 |
| BsmI | GAATGC | 3 cut(s) | 15, 260, 1120 |
| BsnI | GGCC | 2 cut(s) | 1074, 1680 |
| BsoBI | CYCGRG | 1 cut(s) | 975 |
| Bsp119I | TTCGAA | 2 cut(s) | 688, 919 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1137, 1168, 1725 |
| Bsp1407I | TGTACA | 1 cut(s) | 1590 |
| Bsp143I | GATC | 9 cut(s) | 70, 74, 355, 433, 733, 1050, 1330, 1518, 1642 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1724 |
| BspACI | CCGC | 5 cut(s) | 175, 545, 744, 985, 1728 |
| BspANI | GGCC | 2 cut(s) | 1074, 1680 |
| BspCNI | CTCAG | 5 cut(s) | 126, 208, 490, 916, 1737 |
| BspDI | ATCGAT | 1 cut(s) | 73 |
| BspFNI | CGCG | 2 cut(s) | 23, 985 |
| BspLI | GGNNCC | 2 cut(s) | 234, 1068 |
| BspMAI | CTGCAG | 1 cut(s) | 1299 |
| BspMI | ACCTGC | 1 cut(s) | 1346 |
| BspPI | GGATC | 2 cut(s) | 363, 1045 |
| BspQI | GCTCTTC | 1 cut(s) | 793 |
| BspT104I | TTCGAA | 2 cut(s) | 688, 919 |
| BspT107I | GGYRCC | 2 cut(s) | 232, 1066 |
| BsrBI | CCGCTC | 1 cut(s) | 175 |
| BsrDI | GCAATG | 2 cut(s) | 279, 443 |
| BsrFI | RCCGGY | 1 cut(s) | 875 |
| BsrGI | TGTACA | 1 cut(s) | 1590 |
| BsrI | ACTGG | 5 cut(s) | 147, 201, 505, 1115, 1348 |
| BssAI | RCCGGY | 1 cut(s) | 875 |
| BssECI | CCNNGG | 6 cut(s) | 236, 372, 553, 974, 1062, 1658 |
| BssMI | GATC | 9 cut(s) | 70, 74, 355, 433, 733, 1050, 1330, 1518, 1642 |
| BssNAI | GTATAC | 1 cut(s) | 1260 |
| BssNI | GRCGYC | 2 cut(s) | 62, 1067 |
| BssT1I | CCWWGG | 3 cut(s) | 236, 553, 1062 |
| Bst1107I | GTATAC | 1 cut(s) | 1260 |
| Bst2UI | CCWGG | 3 cut(s) | 1071, 1161, 1660 |
| Bst4CI | ACNGT | 8 cut(s) | 32, 373, 390, 440, 581, 967, 1014, 1044 |
| Bst6I | CTCTTC | 2 cut(s) | 619, 793 |
| BstACI | GRCGYC | 2 cut(s) | 62, 1067 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1163, 1691 |
| BstAUI | TGTACA | 1 cut(s) | 1590 |
| BstBAI | YACGTR | 1 cut(s) | 713 |
| BstBI | TTCGAA | 2 cut(s) | 688, 919 |
| BstC8I | GCNNGC | 4 cut(s) | 246, 1510, 1629, 1692 |
| BstDEI | CTNAG | 5 cut(s) | 113, 216, 477, 924, 1724 |
| BstDSI | CCRYGG | 1 cut(s) | 372 |
| BstEII | GGTNACC | 1 cut(s) | 581 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 480 |
| BstF5I | GGATG | 5 cut(s) | 644, 803, 1054, 1089, 1553 |
| BstFNI | CGCG | 2 cut(s) | 23, 985 |
| BstH2I | RGCGCY | 2 cut(s) | 11, 1070 |
| BstHHI | GCGC | 3 cut(s) | 10, 15, 1069 |
| BstKTI | GATC | 9 cut(s) | 73, 77, 358, 436, 736, 1053, 1333, 1521, 1645 |
| BstMAI | GTCTC | 3 cut(s) | 53, 183, 405 |
| BstMBI | GATC | 9 cut(s) | 70, 74, 355, 433, 733, 1050, 1330, 1518, 1642 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 241, 1163, 1402, 1691 |
| BstNI | CCWGG | 3 cut(s) | 1071, 1161, 1660 |
| BstNSI | RCATGY | 2 cut(s) | 248, 1631 |
| BstPI | GGTNACC | 1 cut(s) | 581 |
| BstSCI | CCNGG | 4 cut(s) | 531, 1069, 1159, 1658 |
| BstSFI | CTRYAG | 1 cut(s) | 1295 |
| BstSLI | GKGCMC | 1 cut(s) | 1168 |
| BstSNI | TACGTA | 1 cut(s) | 713 |
| BstUI | CGCG | 2 cut(s) | 23, 985 |
| BstV1I | GCAGC | 1 cut(s) | 859 |
| BstX2I | RGATCY | 2 cut(s) | 1050, 1518 |
| BstYI | RGATCY | 2 cut(s) | 1050, 1518 |
| BstZ17I | GTATAC | 1 cut(s) | 1260 |
| Bsu15I | ATCGAT | 1 cut(s) | 73 |
| BsuRI | GGCC | 2 cut(s) | 1074, 1680 |
| BsuTUI | ATCGAT | 1 cut(s) | 73 |
| BtgI | CCRYGG | 1 cut(s) | 372 |
| BtsCI | GGATG | 5 cut(s) | 644, 803, 1054, 1089, 1553 |
| BtsI | GCAGTG | 1 cut(s) | 1692 |
| BtsIMutI | CAGTG | 5 cut(s) | 194, 466, 901, 1040, 1692 |
| BveI | ACCTGC | 1 cut(s) | 1346 |
| Cac8I | GCNNGC | 4 cut(s) | 246, 1510, 1629, 1692 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1223 |
| CfoI | GCGC | 3 cut(s) | 10, 15, 1069 |
| Cfr10I | RCCGGY | 1 cut(s) | 875 |
| Cfr13I | GGNCC | 4 cut(s) | 101, 369, 550, 1124 |
| ClaI | ATCGAT | 1 cut(s) | 73 |
| CseI | GACGC | 1 cut(s) | 1263 |
| CsiI | ACCWGGT | 1 cut(s) | 1159 |
| Csp6I | GTAC | 7 cut(s) | 319, 473, 1015, 1108, 1215, 1370, 1591 |
| CviAII | CATG | 7 cut(s) | 53, 245, 324, 658, 737, 991, 1628 |
| CviQI | GTAC | 7 cut(s) | 319, 473, 1015, 1108, 1215, 1370, 1591 |
| DdeI | CTNAG | 5 cut(s) | 113, 216, 477, 924, 1724 |
| DinI | GGCGCC | 1 cut(s) | 1068 |
| DpnI | GATC | 9 cut(s) | 72, 76, 357, 435, 735, 1052, 1332, 1520, 1644 |
| DpnII | GATC | 9 cut(s) | 70, 74, 355, 433, 733, 1050, 1330, 1518, 1642 |
| DraIII | CACNNNGTG | 2 cut(s) | 1163, 1737 |
| Eam1104I | CTCTTC | 2 cut(s) | 619, 793 |
| EarI | CTCTTC | 2 cut(s) | 619, 793 |
| Ecl136II | GAGCTC | 1 cut(s) | 1723 |
| Eco105I | TACGTA | 1 cut(s) | 713 |
| Eco130I | CCWWGG | 3 cut(s) | 236, 553, 1062 |
| Eco24I | GRGCYC | 1 cut(s) | 1725 |
| Eco47I | GGWCC | 4 cut(s) | 101, 369, 550, 1124 |
| Eco53kI | GAGCTC | 1 cut(s) | 1723 |
| Eco57I | CTGAAG | 2 cut(s) | 155, 414 |
| Eco88I | CYCGRG | 1 cut(s) | 975 |
| Eco91I | GGTNACC | 1 cut(s) | 581 |
| EcoICRI | GAGCTC | 1 cut(s) | 1723 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 480 |
| EcoO109I | RGGNCCY | 1 cut(s) | 101 |
| EcoO65I | GGTNACC | 1 cut(s) | 581 |
| EcoRII | CCWGG | 3 cut(s) | 1069, 1159, 1658 |
| EcoT14I | CCWWGG | 3 cut(s) | 236, 553, 1062 |
| EcoT22I | ATGCAT | 1 cut(s) | 594 |
| EcoT38I | GRGCYC | 1 cut(s) | 1725 |
| EgeI | GGCGCC | 1 cut(s) | 1068 |
| EheI | GGCGCC | 1 cut(s) | 1068 |
| ErhI | CCWWGG | 3 cut(s) | 236, 553, 1062 |
| Esp3I | CGTCTC | 2 cut(s) | 53, 405 |
| FaeI | CATG | 7 cut(s) | 56, 248, 327, 661, 740, 994, 1631 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1674, 1706 |
| FaqI | GGGAC | 3 cut(s) | 399, 1001, 1072 |
| FatI | CATG | 7 cut(s) | 52, 244, 323, 657, 736, 990, 1627 |
| FauI | CCCGC | 1 cut(s) | 978 |
| FauNDI | CATATG | 1 cut(s) | 1414 |
| FbaI | TGATCA | 1 cut(s) | 733 |
| FblI | GTMKAC | 2 cut(s) | 576, 1259 |
| Fnu4HI | GCNGC | 5 cut(s) | 11, 176, 745, 873, 1729 |
| FokI | GGATG | 5 cut(s) | 651, 790, 1041, 1096, 1560 |
| FriOI | GRGCYC | 1 cut(s) | 1725 |
| Fsp4HI | GCNGC | 5 cut(s) | 11, 176, 745, 873, 1729 |
| FspBI | CTAG | 6 cut(s) | 237, 698, 1076, 1334, 1614, 1706 |
| FspI | TGCGCA | 1 cut(s) | 14 |
| GlaI | GCGC | 3 cut(s) | 9, 14, 1068 |
| GluI | GCNGC | 5 cut(s) | 11, 176, 745, 873, 1729 |
| HaeII | RGCGCY | 2 cut(s) | 11, 1070 |
| HaeIII | GGCC | 2 cut(s) | 1074, 1680 |
| HapII | CCGG | 3 cut(s) | 533, 876, 1420 |
| HgaI | GACGC | 1 cut(s) | 1263 |
| HhaI | GCGC | 3 cut(s) | 10, 15, 1069 |
| Hin1I | GRCGYC | 2 cut(s) | 62, 1067 |
| Hin1II | CATG | 7 cut(s) | 56, 248, 327, 661, 740, 994, 1631 |
| Hin6I | GCGC | 3 cut(s) | 8, 13, 1067 |
| HinP1I | GCGC | 3 cut(s) | 8, 13, 1067 |
| HincII | GTYRAC | 2 cut(s) | 633, 1198 |
| HindII | GTYRAC | 2 cut(s) | 633, 1198 |
| HinfI | GANTC | 5 cut(s) | 191, 409, 466, 501, 829 |
| HpaII | CCGG | 3 cut(s) | 533, 876, 1420 |
| HphI | GGTGA | 5 cut(s) | 521, 593, 874, 943, 1724 |
| Hpy166II | GTNNAC | 9 cut(s) | 50, 321, 577, 633, 716, 934, 1166, 1198, 1260 |
| Hpy188III | TCNNGA | 5 cut(s) | 498, 698, 1127, 1334, 1522 |
| Hpy8I | GTNNAC | 9 cut(s) | 50, 321, 577, 633, 716, 934, 1166, 1198, 1260 |
| HpyAV | CCTTC | 5 cut(s) | 92, 163, 1068, 1447, 1670 |
| HpyCH4III | ACNGT | 8 cut(s) | 32, 373, 390, 440, 581, 967, 1014, 1044 |
| HpyCH4IV | ACGT | 3 cut(s) | 62, 712, 820 |
| HpyCH4V | TGCA | 9 cut(s) | 592, 1118, 1157, 1166, 1193, 1297, 1583, 1627, 1694 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 241, 1163, 1402, 1691 |
| HpyF3I | CTNAG | 5 cut(s) | 113, 216, 477, 924, 1724 |
| HpySE526I | ACGT | 3 cut(s) | 62, 712, 820 |
| Hsp92I | GRCGYC | 2 cut(s) | 62, 1067 |
| Hsp92II | CATG | 7 cut(s) | 56, 248, 327, 661, 740, 994, 1631 |
| HspAI | GCGC | 3 cut(s) | 8, 13, 1067 |
| KasI | GGCGCC | 1 cut(s) | 1066 |
| Ksp22I | TGATCA | 1 cut(s) | 733 |
| Kzo9I | GATC | 9 cut(s) | 70, 74, 355, 433, 733, 1050, 1330, 1518, 1642 |
| LguI | GCTCTTC | 1 cut(s) | 793 |
| LmnI | GCTCC | 5 cut(s) | 172, 941, 1179, 1402, 1505 |
| Lsp1109I | GCAGC | 1 cut(s) | 859 |
| LweI | GCATC | 2 cut(s) | 812, 859 |
| MabI | ACCWGGT | 1 cut(s) | 1159 |
| MaeI | CTAG | 6 cut(s) | 237, 698, 1076, 1334, 1614, 1706 |
| MaeII | ACGT | 3 cut(s) | 62, 712, 820 |
| MaeIII | GTNAC | 2 cut(s) | 581, 979 |
| MalI | GATC | 9 cut(s) | 72, 76, 357, 435, 735, 1052, 1332, 1520, 1644 |
| MbiI | CCGCTC | 1 cut(s) | 175 |
| MboI | GATC | 9 cut(s) | 70, 74, 355, 433, 733, 1050, 1330, 1518, 1642 |
| MboII | GAAGA | 4 cut(s) | 420, 636, 810, 1175 |
| MflI | RGATCY | 2 cut(s) | 1050, 1518 |
| MhlI | GDGCHC | 3 cut(s) | 1137, 1168, 1725 |
| MluCI | AATT | 5 cut(s) | 80, 156, 252, 515, 1287 |
| Mly113I | GGCGCC | 1 cut(s) | 1067 |
| MlyI | GAGTC | 2 cut(s) | 185, 403 |
| MmeI | TCCRAC | 2 cut(s) | 333, 1463 |
| Mph1103I | ATGCAT | 1 cut(s) | 594 |
| MseI | TTAA | 5 cut(s) | 159, 960, 1290, 1499, 1527 |
| MspA1I | CMGCKG | 2 cut(s) | 731, 1728 |
| MspI | CCGG | 3 cut(s) | 533, 876, 1420 |
| MspR9I | CCNGG | 4 cut(s) | 533, 1071, 1161, 1660 |
| MteI | GCGCNGCGC | 1 cut(s) | 11 |
| Mva1269I | GAATGC | 3 cut(s) | 15, 260, 1120 |
| MvaI | CCWGG | 3 cut(s) | 1071, 1161, 1660 |
| MvnI | CGCG | 2 cut(s) | 23, 985 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 241, 1163, 1402, 1691 |
| NarI | GGCGCC | 1 cut(s) | 1067 |
| NciI | CCSGG | 1 cut(s) | 533 |
| NdeI | CATATG | 1 cut(s) | 1414 |
| NdeII | GATC | 9 cut(s) | 70, 74, 355, 433, 733, 1050, 1330, 1518, 1642 |
| NlaIII | CATG | 7 cut(s) | 56, 248, 327, 661, 740, 994, 1631 |
| NlaIV | GGNNCC | 2 cut(s) | 234, 1068 |
| NmeAIII | GCCGAG | 1 cut(s) | 1657 |
| NmuCI | GTSAC | 1 cut(s) | 581 |
| NsbI | TGCGCA | 1 cut(s) | 14 |
| NsiI | ATGCAT | 1 cut(s) | 594 |
| NspI | RCATGY | 2 cut(s) | 248, 1631 |
| NspV | TTCGAA | 2 cut(s) | 688, 919 |
| PaeI | GCATGC | 2 cut(s) | 248, 1631 |
| PciSI | GCTCTTC | 1 cut(s) | 793 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 404, 817 |
| PctI | GAATGC | 3 cut(s) | 15, 260, 1120 |
| PfeI | GAWTC | 3 cut(s) | 466, 501, 829 |
| PkrI | GCNGC | 5 cut(s) | 12, 177, 746, 874, 1730 |
| PleI | GAGTC | 2 cut(s) | 185, 403 |
| PluTI | GGCGCC | 1 cut(s) | 1070 |
| PpsI | GAGTC | 2 cut(s) | 185, 403 |
| Ppu21I | YACGTR | 1 cut(s) | 713 |
| PpuMI | RGGWCCY | 1 cut(s) | 101 |
| PshBI | ATTAAT | 1 cut(s) | 1290 |
| Psp124BI | GAGCTC | 1 cut(s) | 1725 |
| Psp5II | RGGWCCY | 1 cut(s) | 101 |
| Psp6I | CCWGG | 3 cut(s) | 1069, 1159, 1658 |
| PspEI | GGTNACC | 1 cut(s) | 581 |
| PspGI | CCWGG | 3 cut(s) | 1069, 1159, 1658 |
| PspN4I | GGNNCC | 2 cut(s) | 234, 1068 |
| PspPI | GGNCC | 4 cut(s) | 101, 369, 550, 1124 |
| PspPPI | RGGWCCY | 1 cut(s) | 101 |
| PstI | CTGCAG | 1 cut(s) | 1299 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1223 |
| PsuI | RGATCY | 2 cut(s) | 1050, 1518 |
| PvuII | CAGCTG | 1 cut(s) | 731 |
| RsaI | GTAC | 7 cut(s) | 320, 474, 1016, 1109, 1216, 1371, 1592 |
| RsaNI | GTAC | 7 cut(s) | 319, 473, 1015, 1108, 1215, 1370, 1591 |
| SacI | GAGCTC | 1 cut(s) | 1725 |
| SapI | GCTCTTC | 1 cut(s) | 793 |
| SaqAI | TTAA | 5 cut(s) | 159, 960, 1290, 1499, 1527 |
| SatI | GCNGC | 5 cut(s) | 11, 176, 745, 873, 1729 |
| Sau3AI | GATC | 9 cut(s) | 70, 74, 355, 433, 733, 1050, 1330, 1518, 1642 |
| Sau96I | GGNCC | 4 cut(s) | 101, 369, 550, 1124 |
| ScaI | AGTACT | 1 cut(s) | 1109 |
| SchI | GAGTC | 2 cut(s) | 185, 403 |
| ScrFI | CCNGG | 4 cut(s) | 533, 1071, 1161, 1660 |
| SduI | GDGCHC | 3 cut(s) | 1137, 1168, 1725 |
| SexAI | ACCWGGT | 1 cut(s) | 1159 |
| SfaNI | GCATC | 2 cut(s) | 812, 859 |
| SfcI | CTRYAG | 1 cut(s) | 1295 |
| SfoI | GGCGCC | 1 cut(s) | 1068 |
| SfuI | TTCGAA | 2 cut(s) | 688, 919 |
| SinI | GGWCC | 4 cut(s) | 101, 369, 550, 1124 |
| SnaBI | TACGTA | 1 cut(s) | 713 |
| SpeI | ACTAGT | 1 cut(s) | 1613 |
| SphI | GCATGC | 2 cut(s) | 248, 1631 |
| Sse9I | AATT | 5 cut(s) | 80, 156, 252, 515, 1287 |
| SsiI | CCGC | 5 cut(s) | 175, 545, 744, 985, 1728 |
| SspDI | GGCGCC | 1 cut(s) | 1066 |
| SspI | AATATT | 1 cut(s) | 1252 |
| SspMI | CTAG | 6 cut(s) | 237, 698, 1076, 1334, 1614, 1706 |
| SstI | GAGCTC | 1 cut(s) | 1725 |
| StyD4I | CCNGG | 4 cut(s) | 531, 1069, 1159, 1658 |
| StyI | CCWWGG | 3 cut(s) | 236, 553, 1062 |
| TaaI | ACNGT | 8 cut(s) | 32, 373, 390, 440, 581, 967, 1014, 1044 |
| TaiI | ACGT | 3 cut(s) | 65, 715, 823 |
| TaqI | TCGA | 4 cut(s) | 73, 688, 811, 919 |
| TasI | AATT | 5 cut(s) | 80, 156, 252, 515, 1287 |
| TatI | WGTACW | 3 cut(s) | 1107, 1369, 1590 |
| TauI | GCSGC | 3 cut(s) | 178, 747, 1731 |
| TfiI | GAWTC | 3 cut(s) | 466, 501, 829 |
| Tru1I | TTAA | 5 cut(s) | 159, 960, 1290, 1499, 1527 |
| Tru9I | TTAA | 5 cut(s) | 159, 960, 1290, 1499, 1527 |
| TscAI | CASTG | 5 cut(s) | 201, 466, 901, 1047, 1692 |
| TseFI | GTSAC | 1 cut(s) | 581 |
| TseI | GCWGC | 2 cut(s) | 10, 872 |
| Tsp45I | GTSAC | 1 cut(s) | 581 |
| TspDTI | ATGAA | 5 cut(s) | 646, 861, 1007, 1011, 1481 |
| TspGWI | ACGGA | 2 cut(s) | 221, 954 |
| TspRI | CASTG | 5 cut(s) | 201, 466, 901, 1047, 1692 |
| VneI | GTGCAC | 1 cut(s) | 1164 |
| VpaK11BI | GGWCC | 4 cut(s) | 101, 369, 550, 1124 |
| VspI | ATTAAT | 1 cut(s) | 1290 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 480 |
| XapI | RAATTY | 1 cut(s) | 252 |
| XbaI | TCTAGA | 2 cut(s) | 697, 1333 |
| XceI | RCATGY | 2 cut(s) | 248, 1631 |
| XmaJI | CCTAGG | 1 cut(s) | 236 |
| XmiI | GTMKAC | 2 cut(s) | 576, 1259 |
| XspI | CTAG | 6 cut(s) | 237, 698, 1076, 1334, 1614, 1706 |
| ZraI | GACGTC | 1 cut(s) | 63 |
| ZrmI | AGTACT | 1 cut(s) | 1109 |
| Zsp2I | ATGCAT | 1 cut(s) | 594 |