ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 41, 134, 689 |
| AcoI | YGGCCR | 1 cut(s) | 622 |
| AcsI | RAATTY | 3 cut(s) | 65, 409, 420 |
| AcuI | CTGAAG | 1 cut(s) | 80 |
| AfaI | GTAC | 2 cut(s) | 172, 541 |
| AgsI | TTSAA | 3 cut(s) | 419, 659, 752 |
| AluBI | AGCT | 2 cut(s) | 649, 730 |
| AluI | AGCT | 2 cut(s) | 649, 730 |
| Alw21I | GWGCWC | 1 cut(s) | 457 |
| Alw44I | GTGCAC | 1 cut(s) | 453 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 386 |
| AoxI | GGCC | 3 cut(s) | 389, 530, 622 |
| ApaLI | GTGCAC | 1 cut(s) | 453 |
| ApeKI | GCWGC | 2 cut(s) | 508, 599 |
| ApoI | RAATTY | 3 cut(s) | 65, 409, 420 |
| AseI | ATTAAT | 1 cut(s) | 588 |
| AspS9I | GGNCC | 2 cut(s) | 389, 530 |
| AsuHPI | GGTGA | 1 cut(s) | 253 |
| AxyI | CCTNAGG | 1 cut(s) | 462 |
| BaeGI | GKGCMC | 2 cut(s) | 264, 457 |
| BalI | TGGCCA | 1 cut(s) | 624 |
| BanII | GRGCYC | 1 cut(s) | 58 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 744, 776 |
| Bbv12I | GWGCWC | 1 cut(s) | 457 |
| BbvCI | CCTCAGC | 1 cut(s) | 731 |
| BbvI | GCAGC | 2 cut(s) | 495, 586 |
| BccI | CCATC | 1 cut(s) | 97 |
| BceAI | ACGGC | 1 cut(s) | 517 |
| BfaI | CTAG | 1 cut(s) | 778 |
| BfmI | CTRYAG | 1 cut(s) | 509 |
| BisI | GCNGC | 2 cut(s) | 509, 600 |
| BlpI | GCTNAGC | 1 cut(s) | 726 |
| BlsI | GCNGC | 2 cut(s) | 510, 601 |
| BmgT120I | GGNCC | 2 cut(s) | 389, 530 |
| BmiI | GGNNCC | 2 cut(s) | 38, 531 |
| BmrI | ACTGGG | 2 cut(s) | 318, 396 |
| BmsI | GCATC | 2 cut(s) | 373, 418 |
| BmuI | ACTGGG | 2 cut(s) | 318, 396 |
| Bpu10I | CCTNAGC | 1 cut(s) | 731 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 726 |
| BsaJI | CCNNGG | 1 cut(s) | 392 |
| Bse1I | ACTGG | 2 cut(s) | 313, 391 |
| Bse21I | CCTNAGG | 1 cut(s) | 462 |
| BseDI | CCNNGG | 1 cut(s) | 392 |
| BseGI | GGATG | 1 cut(s) | 433 |
| BseMII | CTCAG | 4 cut(s) | 393, 453, 717, 722 |
| BseNI | ACTGG | 2 cut(s) | 313, 391 |
| BseRI | GAGGAG | 1 cut(s) | 770 |
| BseSI | GKGCMC | 2 cut(s) | 264, 457 |
| BseXI | GCAGC | 2 cut(s) | 495, 586 |
| BshFI | GGCC | 3 cut(s) | 391, 532, 624 |
| BsiHKAI | GWGCWC | 1 cut(s) | 457 |
| BsnI | GGCC | 3 cut(s) | 391, 532, 624 |
| Bsp1286I | GDGCHC | 3 cut(s) | 58, 264, 457 |
| Bsp1407I | TGTACA | 1 cut(s) | 170 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 726 |
| Bsp19I | CCATGG | 1 cut(s) | 392 |
| BspACI | CCGC | 3 cut(s) | 41, 134, 689 |
| BspANI | GGCC | 3 cut(s) | 391, 532, 624 |
| BspCNI | CTCAG | 4 cut(s) | 392, 454, 718, 723 |
| BspLI | GGNNCC | 2 cut(s) | 38, 531 |
| BspMAI | CTGCAG | 1 cut(s) | 513 |
| BsrGI | TGTACA | 1 cut(s) | 170 |
| BsrI | ACTGG | 2 cut(s) | 313, 391 |
| BssECI | CCNNGG | 1 cut(s) | 392 |
| BssT1I | CCWWGG | 1 cut(s) | 392 |
| Bst4CI | ACNGT | 2 cut(s) | 175, 683 |
| Bst6I | CTCTTC | 1 cut(s) | 747 |
| BstAUI | TGTACA | 1 cut(s) | 170 |
| BstDEI | CTNAG | 5 cut(s) | 111, 379, 462, 726, 731 |
| BstDSI | CCRYGG | 1 cut(s) | 392 |
| BstF5I | GGATG | 1 cut(s) | 433 |
| BstNSI | RCATGY | 1 cut(s) | 599 |
| BstSFI | CTRYAG | 1 cut(s) | 509 |
| BstSLI | GKGCMC | 2 cut(s) | 264, 457 |
| BstV1I | GCAGC | 2 cut(s) | 495, 586 |
| Bsu36I | CCTNAGG | 1 cut(s) | 462 |
| BsuRI | GGCC | 3 cut(s) | 391, 532, 624 |
| BtgI | CCRYGG | 1 cut(s) | 392 |
| BtsCI | GGATG | 1 cut(s) | 433 |
| CaiI | CAGNNNCTG | 1 cut(s) | 386 |
| Cfr13I | GGNCC | 2 cut(s) | 389, 530 |
| Csp6I | GTAC | 2 cut(s) | 171, 540 |
| CviAII | CATG | 3 cut(s) | 15, 393, 596 |
| CviQI | GTAC | 2 cut(s) | 171, 540 |
| DdeI | CTNAG | 5 cut(s) | 111, 379, 462, 726, 731 |
| EaeI | YGGCCR | 1 cut(s) | 622 |
| Eam1104I | CTCTTC | 1 cut(s) | 747 |
| EarI | CTCTTC | 1 cut(s) | 747 |
| EciI | GGCGGA | 1 cut(s) | 149 |
| Eco130I | CCWWGG | 1 cut(s) | 392 |
| Eco24I | GRGCYC | 1 cut(s) | 58 |
| Eco32I | GATATC | 1 cut(s) | 139 |
| Eco57I | CTGAAG | 1 cut(s) | 80 |
| Eco81I | CCTNAGG | 1 cut(s) | 462 |
| EcoRV | GATATC | 1 cut(s) | 139 |
| EcoT14I | CCWWGG | 1 cut(s) | 392 |
| EcoT38I | GRGCYC | 1 cut(s) | 58 |
| ErhI | CCWWGG | 1 cut(s) | 392 |
| FaeI | CATG | 3 cut(s) | 18, 396, 599 |
| FaiI | YATR | 9 cut(s) | 16, 318, 394, 435, 597, 627, 722, 741, 743 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 476, 508 |
| FatI | CATG | 3 cut(s) | 14, 392, 595 |
| FauI | CCCGC | 1 cut(s) | 48 |
| Fnu4HI | GCNGC | 2 cut(s) | 509, 600 |
| FokI | GGATG | 1 cut(s) | 440 |
| FriOI | GRGCYC | 1 cut(s) | 58 |
| Fsp4HI | GCNGC | 2 cut(s) | 509, 600 |
| FspBI | CTAG | 1 cut(s) | 778 |
| GluI | GCNGC | 2 cut(s) | 509, 600 |
| HaeIII | GGCC | 3 cut(s) | 391, 532, 624 |
| Hin1II | CATG | 3 cut(s) | 18, 396, 599 |
| HinfI | GANTC | 1 cut(s) | 652 |
| HphI | GGTGA | 1 cut(s) | 253 |
| Hpy166II | GTNNAC | 2 cut(s) | 455, 540 |
| Hpy188I | TCNGA | 2 cut(s) | 60, 161 |
| Hpy188III | TCNNGA | 4 cut(s) | 100, 326, 425, 656 |
| Hpy8I | GTNNAC | 2 cut(s) | 455, 540 |
| HpyAV | CCTTC | 3 cut(s) | 175, 281, 436 |
| HpyCH4III | ACNGT | 2 cut(s) | 175, 683 |
| HpyCH4IV | ACGT | 1 cut(s) | 154 |
| HpyCH4V | TGCA | 3 cut(s) | 364, 455, 511 |
| HpyF3I | CTNAG | 5 cut(s) | 111, 379, 462, 726, 731 |
| HpySE526I | ACGT | 1 cut(s) | 154 |
| Hsp92II | CATG | 3 cut(s) | 18, 396, 599 |
| LmnI | GCTCC | 1 cut(s) | 293 |
| LpnPI | CCDG | 8 cut(s) | 37, 191, 294, 339, 372, 474, 497, 557 |
| Lsp1109I | GCAGC | 2 cut(s) | 495, 586 |
| LweI | GCATC | 2 cut(s) | 373, 418 |
| MaeI | CTAG | 1 cut(s) | 778 |
| MaeII | ACGT | 1 cut(s) | 154 |
| MaeIII | GTNAC | 3 cut(s) | 304, 382, 759 |
| MboII | GAAGA | 4 cut(s) | 73, 127, 451, 764 |
| MhlI | GDGCHC | 3 cut(s) | 58, 264, 457 |
| MlsI | TGGCCA | 1 cut(s) | 624 |
| MluNI | TGGCCA | 1 cut(s) | 624 |
| Mox20I | TGGCCA | 1 cut(s) | 624 |
| MscI | TGGCCA | 1 cut(s) | 624 |
| MseI | TTAA | 6 cut(s) | 483, 588, 617, 636, 642, 662 |
| Msp20I | TGGCCA | 1 cut(s) | 624 |
| MspA1I | CMGCKG | 1 cut(s) | 649 |
| NcoI | CCATGG | 1 cut(s) | 392 |
| NlaIII | CATG | 3 cut(s) | 18, 396, 599 |
| NlaIV | GGNNCC | 2 cut(s) | 38, 531 |
| NspI | RCATGY | 1 cut(s) | 599 |
| PfeI | GAWTC | 1 cut(s) | 652 |
| PkrI | GCNGC | 2 cut(s) | 510, 601 |
| PshBI | ATTAAT | 1 cut(s) | 588 |
| PspN4I | GGNNCC | 2 cut(s) | 38, 531 |
| PspPI | GGNCC | 2 cut(s) | 389, 530 |
| PstI | CTGCAG | 1 cut(s) | 513 |
| PstNI | CAGNNNCTG | 1 cut(s) | 386 |
| PvuII | CAGCTG | 1 cut(s) | 649 |
| RsaI | GTAC | 2 cut(s) | 172, 541 |
| RsaNI | GTAC | 2 cut(s) | 171, 540 |
| SaqAI | TTAA | 6 cut(s) | 483, 588, 617, 636, 642, 662 |
| SatI | GCNGC | 2 cut(s) | 509, 600 |
| Sau96I | GGNCC | 2 cut(s) | 389, 530 |
| SduI | GDGCHC | 3 cut(s) | 58, 264, 457 |
| SfaNI | GCATC | 2 cut(s) | 373, 418 |
| SfcI | CTRYAG | 1 cut(s) | 509 |
| SsiI | CCGC | 3 cut(s) | 41, 134, 689 |
| SspMI | CTAG | 1 cut(s) | 778 |
| StyI | CCWWGG | 1 cut(s) | 392 |
| TaaI | ACNGT | 2 cut(s) | 175, 683 |
| TaiI | ACGT | 1 cut(s) | 157 |
| TaqI | TCGA | 4 cut(s) | 217, 367, 678, 715 |
| TatI | WGTACW | 2 cut(s) | 170, 539 |
| TfiI | GAWTC | 1 cut(s) | 652 |
| Tru1I | TTAA | 6 cut(s) | 483, 588, 617, 636, 642, 662 |
| Tru9I | TTAA | 6 cut(s) | 483, 588, 617, 636, 642, 662 |
| TseI | GCWGC | 2 cut(s) | 508, 599 |
| TspDTI | ATGAA | 2 cut(s) | 141, 403 |
| TspGWI | ACGGA | 1 cut(s) | 778 |
| VneI | GTGCAC | 1 cut(s) | 453 |
| VspI | ATTAAT | 1 cut(s) | 588 |
| XapI | RAATTY | 3 cut(s) | 65, 409, 420 |
| XceI | RCATGY | 1 cut(s) | 599 |
| XspI | CTAG | 1 cut(s) | 778 |