ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 505 |
| AccI | GTMKAC | 1 cut(s) | 154 |
| AciI | CCGC | 3 cut(s) | 416, 469, 496 |
| AclWI | GGATC | 1 cut(s) | 304 |
| AfaI | GTAC | 2 cut(s) | 358, 606 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 505 |
| AgsI | TTSAA | 1 cut(s) | 13 |
| AjnI | CCWGG | 3 cut(s) | 237, 390, 554 |
| AluBI | AGCT | 3 cut(s) | 9, 479, 503 |
| AluI | AGCT | 3 cut(s) | 9, 479, 503 |
| Alw26I | GTCTC | 4 cut(s) | 44, 47, 251, 414 |
| AlwI | GGATC | 1 cut(s) | 304 |
| Ama87I | CYCGRG | 1 cut(s) | 633 |
| AoxI | GGCC | 1 cut(s) | 465 |
| ApeKI | GCWGC | 2 cut(s) | 386, 476 |
| AspS9I | GGNCC | 2 cut(s) | 461, 466 |
| AsuC2I | CCSGG | 1 cut(s) | 35 |
| AsuHPI | GGTGA | 3 cut(s) | 177, 310, 544 |
| AvaI | CYCGRG | 1 cut(s) | 633 |
| AvaII | GGWCC | 1 cut(s) | 461 |
| BauI | CACGAG | 1 cut(s) | 189 |
| BbsI | GAAGAC | 1 cut(s) | 201 |
| BbvI | GCAGC | 2 cut(s) | 398, 488 |
| BccI | CCATC | 1 cut(s) | 517 |
| BceAI | ACGGC | 1 cut(s) | 360 |
| BciT130I | CCWGG | 3 cut(s) | 239, 392, 556 |
| BciVI | GTATCC | 1 cut(s) | 633 |
| BcnI | CCSGG | 1 cut(s) | 35 |
| BcoDI | GTCTC | 4 cut(s) | 44, 47, 251, 414 |
| BfaI | CTAG | 6 cut(s) | 20, 68, 96, 122, 383, 489 |
| BfuI | GTATCC | 1 cut(s) | 633 |
| BglII | AGATCT | 1 cut(s) | 659 |
| BisI | GCNGC | 2 cut(s) | 387, 477 |
| BlsI | GCNGC | 2 cut(s) | 388, 478 |
| BmcAI | AGTACT | 1 cut(s) | 358 |
| Bme1390I | CCNGG | 4 cut(s) | 35, 239, 392, 556 |
| Bme18I | GGWCC | 1 cut(s) | 461 |
| BmeT110I | CYCGRG | 1 cut(s) | 633 |
| BmgT120I | GGNCC | 2 cut(s) | 461, 466 |
| BmiI | GGNNCC | 1 cut(s) | 544 |
| BmrFI | CCNGG | 4 cut(s) | 35, 239, 392, 556 |
| BmsI | GCATC | 2 cut(s) | 52, 265 |
| BoxI | GACNNNNGTC | 3 cut(s) | 150, 201, 669 |
| BpiI | GAAGAC | 1 cut(s) | 201 |
| BpuEI | CTTGAG | 1 cut(s) | 42 |
| BpuMI | CCSGG | 1 cut(s) | 35 |
| Bsa29I | ATCGAT | 1 cut(s) | 565 |
| BsaAI | YACGTR | 1 cut(s) | 363 |
| BsaI | GGTCTC | 1 cut(s) | 44 |
| BsaJI | CCNNGG | 4 cut(s) | 34, 390, 404, 555 |
| BsaWI | WCCGGW | 1 cut(s) | 320 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 505 |
| Bse3DI | GCAATG | 2 cut(s) | 132, 411 |
| BseBI | CCWGG | 3 cut(s) | 239, 392, 556 |
| BseCI | ATCGAT | 1 cut(s) | 565 |
| BseDI | CCNNGG | 4 cut(s) | 34, 390, 404, 555 |
| BseGI | GGATG | 1 cut(s) | 451 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 505 |
| BseMI | GCAATG | 2 cut(s) | 132, 411 |
| BseMII | CTCAG | 3 cut(s) | 262, 494, 644 |
| BseXI | GCAGC | 2 cut(s) | 398, 488 |
| BsgI | GTGCAG | 1 cut(s) | 495 |
| BshFI | GGCC | 1 cut(s) | 467 |
| BshVI | ATCGAT | 1 cut(s) | 565 |
| BsiHKCI | CYCGRG | 1 cut(s) | 633 |
| BsiSI | CCGG | 3 cut(s) | 34, 321, 464 |
| BslFI | GGGAC | 1 cut(s) | 657 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 505 |
| BsmAI | GTCTC | 4 cut(s) | 44, 47, 251, 414 |
| BsmBI | CGTCTC | 1 cut(s) | 251 |
| BsmFI | GGGAC | 1 cut(s) | 657 |
| BsnI | GGCC | 1 cut(s) | 467 |
| Bso31I | GGTCTC | 1 cut(s) | 44 |
| BsoBI | CYCGRG | 1 cut(s) | 633 |
| Bsp1407I | TGTACA | 1 cut(s) | 604 |
| Bsp143I | GATC | 2 cut(s) | 296, 659 |
| Bsp19I | CCATGG | 1 cut(s) | 404 |
| BspACI | CCGC | 3 cut(s) | 416, 469, 496 |
| BspANI | GGCC | 1 cut(s) | 467 |
| BspCNI | CTCAG | 3 cut(s) | 261, 493, 645 |
| BspDI | ATCGAT | 1 cut(s) | 565 |
| BspLI | GGNNCC | 1 cut(s) | 544 |
| BspPI | GGATC | 1 cut(s) | 304 |
| BspTNI | GGTCTC | 1 cut(s) | 44 |
| BsrDI | GCAATG | 2 cut(s) | 132, 411 |
| BsrGI | TGTACA | 1 cut(s) | 604 |
| BssECI | CCNNGG | 4 cut(s) | 34, 390, 404, 555 |
| BssMI | GATC | 2 cut(s) | 296, 659 |
| BssSI | CACGAG | 1 cut(s) | 189 |
| BssT1I | CCWWGG | 1 cut(s) | 404 |
| Bst2BI | CACGAG | 1 cut(s) | 189 |
| Bst2UI | CCWGG | 3 cut(s) | 239, 392, 556 |
| Bst4CI | ACNGT | 3 cut(s) | 203, 332, 515 |
| BstAUI | TGTACA | 1 cut(s) | 604 |
| BstBAI | YACGTR | 1 cut(s) | 363 |
| BstC8I | GCNNGC | 1 cut(s) | 469 |
| BstDEI | CTNAG | 3 cut(s) | 248, 480, 653 |
| BstDSI | CCRYGG | 1 cut(s) | 404 |
| BstF5I | GGATG | 1 cut(s) | 451 |
| BstKTI | GATC | 2 cut(s) | 299, 662 |
| BstMAI | GTCTC | 4 cut(s) | 44, 47, 251, 414 |
| BstMBI | GATC | 2 cut(s) | 296, 659 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 344, 473 |
| BstNI | CCWGG | 3 cut(s) | 239, 392, 556 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 150, 201, 669 |
| BstSCI | CCNGG | 4 cut(s) | 33, 237, 390, 554 |
| BstV1I | GCAGC | 2 cut(s) | 398, 488 |
| BstV2I | GAAGAC | 1 cut(s) | 201 |
| BstX2I | RGATCY | 2 cut(s) | 296, 659 |
| BstYI | RGATCY | 2 cut(s) | 296, 659 |
| Bsu15I | ATCGAT | 1 cut(s) | 565 |
| BsuI | GTATCC | 1 cut(s) | 633 |
| BsuRI | GGCC | 1 cut(s) | 467 |
| BsuTUI | ATCGAT | 1 cut(s) | 565 |
| BtgI | CCRYGG | 1 cut(s) | 404 |
| BtsCI | GGATG | 1 cut(s) | 451 |
| BtsI | GCAGTG | 1 cut(s) | 478 |
| BtsIMutI | CAGTG | 1 cut(s) | 478 |
| Cac8I | GCNNGC | 1 cut(s) | 469 |
| Cfr13I | GGNCC | 2 cut(s) | 461, 466 |
| ClaI | ATCGAT | 1 cut(s) | 565 |
| CseI | GACGC | 2 cut(s) | 71, 233 |
| Csp6I | GTAC | 2 cut(s) | 357, 605 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 439, 474 |
| CviAII | CATG | 1 cut(s) | 405 |
| CviJI | RGCY | 6 cut(s) | 9, 389, 409, 467, 479, 503 |
| CviKI_1 | RGCY | 6 cut(s) | 9, 389, 409, 467, 479, 503 |
| CviQI | GTAC | 2 cut(s) | 357, 605 |
| DdeI | CTNAG | 3 cut(s) | 248, 480, 653 |
| DpnI | GATC | 2 cut(s) | 298, 661 |
| DpnII | GATC | 2 cut(s) | 296, 659 |
| EciI | GGCGGA | 1 cut(s) | 485 |
| Eco130I | CCWWGG | 1 cut(s) | 404 |
| Eco31I | GGTCTC | 1 cut(s) | 44 |
| Eco47I | GGWCC | 1 cut(s) | 461 |
| Eco88I | CYCGRG | 1 cut(s) | 633 |
| EcoRII | CCWGG | 3 cut(s) | 237, 390, 554 |
| EcoT14I | CCWWGG | 1 cut(s) | 404 |
| ErhI | CCWWGG | 1 cut(s) | 404 |
| Esp3I | CGTCTC | 1 cut(s) | 251 |
| FaeI | CATG | 1 cut(s) | 408 |
| FaiI | YATR | 6 cut(s) | 161, 270, 328, 406, 530, 570 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 567, 599 |
| FaqI | GGGAC | 1 cut(s) | 657 |
| FatI | CATG | 1 cut(s) | 404 |
| FauI | CCCGC | 2 cut(s) | 409, 476 |
| FblI | GTMKAC | 1 cut(s) | 154 |
| Fnu4HI | GCNGC | 2 cut(s) | 387, 477 |
| FokI | GGATG | 1 cut(s) | 458 |
| Fsp4HI | GCNGC | 2 cut(s) | 387, 477 |
| FspBI | CTAG | 6 cut(s) | 20, 68, 96, 122, 383, 489 |
| GluI | GCNGC | 2 cut(s) | 387, 477 |
| HaeIII | GGCC | 1 cut(s) | 467 |
| HapII | CCGG | 3 cut(s) | 34, 321, 464 |
| HgaI | GACGC | 2 cut(s) | 71, 233 |
| Hin1II | CATG | 1 cut(s) | 408 |
| HincII | GTYRAC | 2 cut(s) | 73, 155 |
| HindII | GTYRAC | 2 cut(s) | 73, 155 |
| HindIII | AAGCTT | 1 cut(s) | 501 |
| HinfI | GANTC | 5 cut(s) | 55, 367, 492, 534, 549 |
| HpaII | CCGG | 3 cut(s) | 34, 321, 464 |
| HphI | GGTGA | 3 cut(s) | 177, 310, 544 |
| Hpy166II | GTNNAC | 4 cut(s) | 73, 155, 185, 511 |
| Hpy188I | TCNGA | 7 cut(s) | 87, 115, 133, 483, 600, 654, 664 |
| Hpy188III | TCNNGA | 5 cut(s) | 59, 250, 489, 546, 633 |
| Hpy8I | GTNNAC | 4 cut(s) | 73, 155, 185, 511 |
| Hpy99I | CGWCG | 2 cut(s) | 156, 159 |
| HpyAV | CCTTC | 1 cut(s) | 223 |
| HpyCH4III | ACNGT | 3 cut(s) | 203, 332, 515 |
| HpyCH4IV | ACGT | 3 cut(s) | 147, 157, 362 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 278, 476 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 344, 473 |
| HpyF3I | CTNAG | 3 cut(s) | 248, 480, 653 |
| HpySE526I | ACGT | 3 cut(s) | 147, 157, 362 |
| Hsp92II | CATG | 1 cut(s) | 408 |
| Kzo9I | GATC | 2 cut(s) | 296, 659 |
| Lsp1109I | GCAGC | 2 cut(s) | 398, 488 |
| LweI | GCATC | 2 cut(s) | 52, 265 |
| MaeI | CTAG | 6 cut(s) | 20, 68, 96, 122, 383, 489 |
| MaeII | ACGT | 3 cut(s) | 147, 157, 362 |
| MalI | GATC | 2 cut(s) | 298, 661 |
| MboI | GATC | 2 cut(s) | 296, 659 |
| MboII | GAAGA | 2 cut(s) | 206, 587 |
| MflI | RGATCY | 2 cut(s) | 296, 659 |
| MluCI | AATT | 2 cut(s) | 28, 617 |
| MlyI | GAGTC | 1 cut(s) | 49 |
| MmeI | TCCRAC | 2 cut(s) | 156, 274 |
| MnlI | CCTC | 4 cut(s) | 200, 219, 606, 660 |
| MseI | TTAA | 3 cut(s) | 168, 396, 426 |
| MslI | CAYNNNNRTG | 1 cut(s) | 273 |
| MspI | CCGG | 3 cut(s) | 34, 321, 464 |
| MspR9I | CCNGG | 4 cut(s) | 35, 239, 392, 556 |
| MvaI | CCWGG | 3 cut(s) | 239, 392, 556 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 344, 473 |
| NciI | CCSGG | 1 cut(s) | 35 |
| NcoI | CCATGG | 1 cut(s) | 404 |
| NdeII | GATC | 2 cut(s) | 296, 659 |
| NlaIII | CATG | 1 cut(s) | 408 |
| NlaIV | GGNNCC | 1 cut(s) | 544 |
| PfeI | GAWTC | 4 cut(s) | 367, 492, 534, 549 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 505 |
| PkrI | GCNGC | 2 cut(s) | 388, 478 |
| PleI | GAGTC | 1 cut(s) | 49 |
| PpsI | GAGTC | 1 cut(s) | 49 |
| Ppu21I | YACGTR | 1 cut(s) | 363 |
| PshAI | GACNNNNGTC | 3 cut(s) | 150, 201, 669 |
| Psp6I | CCWGG | 3 cut(s) | 237, 390, 554 |
| PspGI | CCWGG | 3 cut(s) | 237, 390, 554 |
| PspN4I | GGNNCC | 1 cut(s) | 544 |
| PspPI | GGNCC | 2 cut(s) | 461, 466 |
| PsuI | RGATCY | 2 cut(s) | 296, 659 |
| RsaI | GTAC | 2 cut(s) | 358, 606 |
| RsaNI | GTAC | 2 cut(s) | 357, 605 |
| RseI | CAYNNNNRTG | 1 cut(s) | 273 |
| SalI | GTCGAC | 1 cut(s) | 153 |
| SaqAI | TTAA | 3 cut(s) | 168, 396, 426 |
| SatI | GCNGC | 2 cut(s) | 387, 477 |
| Sau3AI | GATC | 2 cut(s) | 296, 659 |
| Sau96I | GGNCC | 2 cut(s) | 461, 466 |
| ScaI | AGTACT | 1 cut(s) | 358 |
| SchI | GAGTC | 1 cut(s) | 49 |
| ScrFI | CCNGG | 4 cut(s) | 35, 239, 392, 556 |
| SfaNI | GCATC | 2 cut(s) | 52, 265 |
| SgrDI | CGTCGACG | 1 cut(s) | 153 |
| SinI | GGWCC | 1 cut(s) | 461 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 273 |
| SmlI | CTYRAG | 1 cut(s) | 57 |
| SmoI | CTYRAG | 1 cut(s) | 57 |
| Sse9I | AATT | 2 cut(s) | 28, 617 |
| SsiI | CCGC | 3 cut(s) | 416, 469, 496 |
| SspI | AATATT | 1 cut(s) | 49 |
| SspMI | CTAG | 6 cut(s) | 20, 68, 96, 122, 383, 489 |
| StyD4I | CCNGG | 4 cut(s) | 33, 237, 390, 554 |
| StyI | CCWWGG | 1 cut(s) | 404 |
| TaaI | ACNGT | 3 cut(s) | 203, 332, 515 |
| TaiI | ACGT | 3 cut(s) | 150, 160, 365 |
| TaqI | TCGA | 3 cut(s) | 154, 205, 565 |
| TasI | AATT | 2 cut(s) | 28, 617 |
| TatI | WGTACW | 2 cut(s) | 356, 604 |
| TfiI | GAWTC | 4 cut(s) | 367, 492, 534, 549 |
| Tru1I | TTAA | 3 cut(s) | 168, 396, 426 |
| Tru9I | TTAA | 3 cut(s) | 168, 396, 426 |
| TscAI | CASTG | 1 cut(s) | 478 |
| TseI | GCWGC | 2 cut(s) | 386, 476 |
| TspDTI | ATGAA | 1 cut(s) | 444 |
| TspRI | CASTG | 1 cut(s) | 478 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 505 |
| VpaK11BI | GGWCC | 1 cut(s) | 461 |
| XbaI | TCTAGA | 1 cut(s) | 488 |
| XmiI | GTMKAC | 1 cut(s) | 154 |
| XspI | CTAG | 6 cut(s) | 20, 68, 96, 122, 383, 489 |
| ZrmI | AGTACT | 1 cut(s) | 358 |