ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 613 |
| AciI | CCGC | 2 cut(s) | 395, 464 |
| AclWI | GGATC | 4 cut(s) | 302, 443, 520, 533 |
| AcsI | RAATTY | 1 cut(s) | 613 |
| AcuI | CTGAAG | 2 cut(s) | 341, 660 |
| AfaI | GTAC | 1 cut(s) | 154 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 85, 319 |
| AgsI | TTSAA | 2 cut(s) | 236, 553 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 14, 46 |
| AluBI | AGCT | 3 cut(s) | 476, 542, 676 |
| AluI | AGCT | 3 cut(s) | 476, 542, 676 |
| AlwI | GGATC | 4 cut(s) | 302, 443, 520, 533 |
| AoxI | GGCC | 1 cut(s) | 144 |
| ApeKI | GCWGC | 2 cut(s) | 175, 367 |
| ApoI | RAATTY | 1 cut(s) | 613 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 210, 242 |
| AspLEI | GCGC | 1 cut(s) | 78 |
| AspS9I | GGNCC | 2 cut(s) | 145, 534 |
| AsuHPI | GGTGA | 1 cut(s) | 317 |
| AvaII | GGWCC | 1 cut(s) | 534 |
| BaeGI | GKGCMC | 1 cut(s) | 91 |
| BamHI | GGATCC | 1 cut(s) | 525 |
| BbvI | GCAGC | 2 cut(s) | 162, 379 |
| BccI | CCATC | 1 cut(s) | 69 |
| BfaI | CTAG | 2 cut(s) | 123, 677 |
| BfoI | RGCGCY | 1 cut(s) | 79 |
| BfuAI | ACCTGC | 1 cut(s) | 613 |
| BisI | GCNGC | 2 cut(s) | 176, 368 |
| BlsI | GCNGC | 2 cut(s) | 177, 369 |
| Bme18I | GGWCC | 1 cut(s) | 534 |
| BmgT120I | GGNCC | 2 cut(s) | 145, 534 |
| BmiI | GGNNCC | 2 cut(s) | 147, 527 |
| BmsI | GCATC | 3 cut(s) | 102, 257, 286 |
| BpmI | CTGGAG | 1 cut(s) | 200 |
| BpuEI | CTTGAG | 1 cut(s) | 492 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 85, 319 |
| BseGI | GGATG | 3 cut(s) | 117, 155, 248 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 85, 319 |
| BseMII | CTCAG | 1 cut(s) | 328 |
| BseSI | GKGCMC | 1 cut(s) | 91 |
| BseXI | GCAGC | 2 cut(s) | 162, 379 |
| BshFI | GGCC | 1 cut(s) | 146 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 85, 319 |
| BsnI | GGCC | 1 cut(s) | 146 |
| Bsp1286I | GDGCHC | 1 cut(s) | 91 |
| Bsp143I | GATC | 5 cut(s) | 160, 307, 448, 525, 562 |
| BspACI | CCGC | 2 cut(s) | 395, 464 |
| BspANI | GGCC | 1 cut(s) | 146 |
| BspCNI | CTCAG | 1 cut(s) | 327 |
| BspLI | GGNNCC | 2 cut(s) | 147, 527 |
| BspMI | ACCTGC | 1 cut(s) | 613 |
| BspPI | GGATC | 4 cut(s) | 302, 443, 520, 533 |
| BspQI | GCTCTTC | 1 cut(s) | 122 |
| BssMI | GATC | 5 cut(s) | 160, 307, 448, 525, 562 |
| Bst4CI | ACNGT | 2 cut(s) | 11, 93 |
| Bst6I | CTCTTC | 1 cut(s) | 122 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 254 |
| BstC8I | GCNNGC | 1 cut(s) | 741 |
| BstDEI | CTNAG | 3 cut(s) | 69, 314, 657 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 317 |
| BstF5I | GGATG | 3 cut(s) | 117, 155, 248 |
| BstH2I | RGCGCY | 1 cut(s) | 79 |
| BstHHI | GCGC | 1 cut(s) | 78 |
| BstKTI | GATC | 5 cut(s) | 163, 310, 451, 528, 565 |
| BstMBI | GATC | 5 cut(s) | 160, 307, 448, 525, 562 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 254 |
| BstSLI | GKGCMC | 1 cut(s) | 91 |
| BstV1I | GCAGC | 2 cut(s) | 162, 379 |
| BstX2I | RGATCY | 1 cut(s) | 525 |
| BstYI | RGATCY | 1 cut(s) | 525 |
| BsuRI | GGCC | 1 cut(s) | 146 |
| BtgZI | GCGATG | 1 cut(s) | 569 |
| BtsCI | GGATG | 3 cut(s) | 117, 155, 248 |
| BtsI | GCAGTG | 2 cut(s) | 170, 297 |
| BtsIMutI | CAGTG | 3 cut(s) | 89, 170, 297 |
| BveI | ACCTGC | 1 cut(s) | 613 |
| Cac8I | GCNNGC | 1 cut(s) | 741 |
| CfoI | GCGC | 1 cut(s) | 78 |
| Cfr13I | GGNCC | 2 cut(s) | 145, 534 |
| CseI | GACGC | 2 cut(s) | 194, 228 |
| Csp6I | GTAC | 1 cut(s) | 153 |
| CviAII | CATG | 2 cut(s) | 254, 363 |
| CviQI | GTAC | 1 cut(s) | 153 |
| DdeI | CTNAG | 3 cut(s) | 69, 314, 657 |
| DpnI | GATC | 5 cut(s) | 162, 309, 450, 527, 564 |
| DpnII | GATC | 5 cut(s) | 160, 307, 448, 525, 562 |
| Eam1104I | CTCTTC | 1 cut(s) | 122 |
| EarI | CTCTTC | 1 cut(s) | 122 |
| EciI | GGCGGA | 1 cut(s) | 410 |
| Eco47I | GGWCC | 1 cut(s) | 534 |
| Eco57I | CTGAAG | 2 cut(s) | 341, 660 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 317 |
| EcoT22I | ATGCAT | 1 cut(s) | 459 |
| FaeI | CATG | 2 cut(s) | 257, 366 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 486, 518 |
| FatI | CATG | 2 cut(s) | 253, 362 |
| Fnu4HI | GCNGC | 2 cut(s) | 176, 368 |
| FokI | GGATG | 3 cut(s) | 124, 142, 235 |
| Fsp4HI | GCNGC | 2 cut(s) | 176, 368 |
| FspBI | CTAG | 2 cut(s) | 123, 677 |
| GlaI | GCGC | 1 cut(s) | 77 |
| GluI | GCNGC | 2 cut(s) | 176, 368 |
| GsuI | CTGGAG | 1 cut(s) | 200 |
| HaeII | RGCGCY | 1 cut(s) | 79 |
| HaeIII | GGCC | 1 cut(s) | 146 |
| HgaI | GACGC | 2 cut(s) | 194, 228 |
| HhaI | GCGC | 1 cut(s) | 78 |
| Hin1II | CATG | 2 cut(s) | 257, 366 |
| Hin6I | GCGC | 1 cut(s) | 76 |
| HinP1I | GCGC | 1 cut(s) | 76 |
| HincII | GTYRAC | 1 cut(s) | 135 |
| HindII | GTYRAC | 1 cut(s) | 135 |
| HindIII | AAGCTT | 1 cut(s) | 540 |
| HinfI | GANTC | 4 cut(s) | 136, 193, 489, 720 |
| HphI | GGTGA | 1 cut(s) | 317 |
| Hpy166II | GTNNAC | 4 cut(s) | 96, 135, 170, 197 |
| Hpy188I | TCNGA | 4 cut(s) | 58, 160, 413, 735 |
| Hpy188III | TCNNGA | 3 cut(s) | 509, 523, 529 |
| Hpy8I | GTNNAC | 4 cut(s) | 96, 135, 170, 197 |
| Hpy99I | CGWCG | 2 cut(s) | 210, 222 |
| HpyAV | CCTTC | 4 cut(s) | 260, 547, 586, 635 |
| HpyCH4III | ACNGT | 2 cut(s) | 11, 93 |
| HpyCH4V | TGCA | 7 cut(s) | 257, 277, 295, 329, 342, 457, 631 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 254 |
| HpyF3I | CTNAG | 3 cut(s) | 69, 314, 657 |
| Hsp92II | CATG | 2 cut(s) | 257, 366 |
| HspAI | GCGC | 1 cut(s) | 76 |
| Kzo9I | GATC | 5 cut(s) | 160, 307, 448, 525, 562 |
| LguI | GCTCTTC | 1 cut(s) | 122 |
| LmnI | GCTCC | 1 cut(s) | 73 |
| Lsp1109I | GCAGC | 2 cut(s) | 162, 379 |
| LweI | GCATC | 3 cut(s) | 102, 257, 286 |
| MaeI | CTAG | 2 cut(s) | 123, 677 |
| MaeIII | GTNAC | 2 cut(s) | 498, 682 |
| MalI | GATC | 5 cut(s) | 162, 309, 450, 527, 564 |
| MboI | GATC | 5 cut(s) | 160, 307, 448, 525, 562 |
| MboII | GAAGA | 3 cut(s) | 109, 120, 524 |
| MflI | RGATCY | 1 cut(s) | 525 |
| MhlI | GDGCHC | 1 cut(s) | 91 |
| MluCI | AATT | 3 cut(s) | 239, 428, 613 |
| MlyI | GAGTC | 3 cut(s) | 130, 202, 729 |
| MnlI | CCTC | 7 cut(s) | 102, 323, 396, 449, 525, 709, 718 |
| Mph1103I | ATGCAT | 1 cut(s) | 459 |
| MseI | TTAA | 3 cut(s) | 336, 621, 745 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 254 |
| NdeII | GATC | 5 cut(s) | 160, 307, 448, 525, 562 |
| NlaIII | CATG | 2 cut(s) | 257, 366 |
| NlaIV | GGNNCC | 2 cut(s) | 147, 527 |
| NmuCI | GTSAC | 1 cut(s) | 682 |
| NsiI | ATGCAT | 1 cut(s) | 459 |
| PciSI | GCTCTTC | 1 cut(s) | 122 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 214, 226 |
| PfeI | GAWTC | 1 cut(s) | 489 |
| PkrI | GCNGC | 2 cut(s) | 177, 369 |
| PleI | GAGTC | 3 cut(s) | 130, 201, 728 |
| PpsI | GAGTC | 3 cut(s) | 130, 201, 728 |
| PspN4I | GGNNCC | 2 cut(s) | 147, 527 |
| PspPI | GGNCC | 2 cut(s) | 145, 534 |
| PsuI | RGATCY | 1 cut(s) | 525 |
| RsaI | GTAC | 1 cut(s) | 154 |
| RsaNI | GTAC | 1 cut(s) | 153 |
| SapI | GCTCTTC | 1 cut(s) | 122 |
| SaqAI | TTAA | 3 cut(s) | 336, 621, 745 |
| SatI | GCNGC | 2 cut(s) | 176, 368 |
| Sau3AI | GATC | 5 cut(s) | 160, 307, 448, 525, 562 |
| Sau96I | GGNCC | 2 cut(s) | 145, 534 |
| SchI | GAGTC | 3 cut(s) | 130, 202, 729 |
| SduI | GDGCHC | 1 cut(s) | 91 |
| SetI | ASST | 8 cut(s) | 271, 349, 478, 536, 544, 607, 646, 678 |
| SfaNI | GCATC | 3 cut(s) | 102, 257, 286 |
| SinI | GGWCC | 1 cut(s) | 534 |
| SmlI | CTYRAG | 1 cut(s) | 507 |
| SmoI | CTYRAG | 1 cut(s) | 507 |
| Sse9I | AATT | 3 cut(s) | 239, 428, 613 |
| SsiI | CCGC | 2 cut(s) | 395, 464 |
| SspMI | CTAG | 2 cut(s) | 123, 677 |
| TaaI | ACNGT | 2 cut(s) | 11, 93 |
| TaqI | TCGA | 4 cut(s) | 447, 487, 610, 723 |
| TasI | AATT | 3 cut(s) | 239, 428, 613 |
| TatI | WGTACW | 1 cut(s) | 152 |
| TfiI | GAWTC | 1 cut(s) | 489 |
| Tru1I | TTAA | 3 cut(s) | 336, 621, 745 |
| Tru9I | TTAA | 3 cut(s) | 336, 621, 745 |
| TscAI | CASTG | 3 cut(s) | 96, 177, 297 |
| TseFI | GTSAC | 1 cut(s) | 682 |
| TseI | GCWGC | 2 cut(s) | 175, 367 |
| Tsp45I | GTSAC | 1 cut(s) | 682 |
| TspDTI | ATGAA | 1 cut(s) | 572 |
| TspRI | CASTG | 3 cut(s) | 96, 177, 297 |
| VpaK11BI | GGWCC | 1 cut(s) | 534 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 317 |
| XapI | RAATTY | 1 cut(s) | 613 |
| XspI | CTAG | 2 cut(s) | 123, 677 |
| Zsp2I | ATGCAT | 1 cut(s) | 459 |