ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 8 - 223 | 3.8e-13 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 751 |
| AccB1I | GGYRCC | 3 cut(s) | 751, 940, 1079 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 363 |
| AccBSI | CCGCTC | 1 cut(s) | 932 |
| AciI | CCGC | 4 cut(s) | 154, 733, 892, 932 |
| AclWI | GGATC | 4 cut(s) | 10, 304, 550, 672 |
| AcsI | RAATTY | 1 cut(s) | 871 |
| AfaI | GTAC | 3 cut(s) | 355, 753, 959 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 100, 211, 319, 363, 470, 700, 739, 806, 807 |
| AgeI | ACCGGT | 1 cut(s) | 700 |
| AgsI | TTSAA | 5 cut(s) | 13, 427, 887, 917, 1023 |
| AjnI | CCWGG | 1 cut(s) | 936 |
| AluBI | AGCT | 1 cut(s) | 347 |
| AluI | AGCT | 1 cut(s) | 347 |
| Alw21I | GWGCWC | 1 cut(s) | 187 |
| Alw26I | GTCTC | 3 cut(s) | 47, 79, 110 |
| Alw44I | GTGCAC | 1 cut(s) | 183 |
| AlwI | GGATC | 4 cut(s) | 10, 304, 550, 672 |
| AoxI | GGCC | 3 cut(s) | 123, 933, 993 |
| ApaLI | GTGCAC | 1 cut(s) | 183 |
| ApeKI | GCWGC | 1 cut(s) | 4 |
| ApoI | RAATTY | 1 cut(s) | 871 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 82, 114, 518, 550 |
| AsiGI | ACCGGT | 1 cut(s) | 700 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 256, 491 |
| Asp718I | GGTACC | 1 cut(s) | 751 |
| AspLEI | GCGC | 1 cut(s) | 67 |
| AspS9I | GGNCC | 5 cut(s) | 367, 461, 558, 934, 1013 |
| AsuC2I | CCSGG | 2 cut(s) | 695, 808 |
| AsuHPI | GGTGA | 3 cut(s) | 120, 431, 634 |
| AsuII | TTCGAA | 1 cut(s) | 250 |
| AvaII | GGWCC | 4 cut(s) | 367, 461, 558, 1013 |
| AxyI | CCTNAGG | 1 cut(s) | 189 |
| BaeGI | GKGCMC | 1 cut(s) | 187 |
| BanI | GGYRCC | 3 cut(s) | 751, 940, 1079 |
| BanII | GRGCYC | 1 cut(s) | 640 |
| BauI | CACGAG | 1 cut(s) | 468 |
| BbsI | GAAGAC | 2 cut(s) | 239, 301 |
| Bbv12I | GWGCWC | 1 cut(s) | 187 |
| BbvI | GCAGC | 1 cut(s) | 16 |
| BccI | CCATC | 1 cut(s) | 164 |
| BceAI | ACGGC | 2 cut(s) | 189, 1093 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 435, 469, 930, 964 |
| BciT130I | CCWGG | 1 cut(s) | 938 |
| BcnI | CCSGG | 2 cut(s) | 695, 808 |
| BcoDI | GTCTC | 3 cut(s) | 47, 79, 110 |
| BfaI | CTAG | 4 cut(s) | 96, 410, 633, 1008 |
| BfmI | CTRYAG | 1 cut(s) | 291 |
| BglII | AGATCT | 1 cut(s) | 133 |
| BisI | GCNGC | 4 cut(s) | 5, 154, 893, 933 |
| BlsI | GCNGC | 4 cut(s) | 6, 155, 894, 934 |
| Bme1390I | CCNGG | 3 cut(s) | 695, 808, 938 |
| Bme18I | GGWCC | 4 cut(s) | 367, 461, 558, 1013 |
| BmgT120I | GGNCC | 5 cut(s) | 367, 461, 558, 934, 1013 |
| BmiI | GGNNCC | 6 cut(s) | 368, 462, 699, 753, 942, 1081 |
| BmrFI | CCNGG | 3 cut(s) | 695, 808, 938 |
| BmrI | ACTGGG | 1 cut(s) | 858 |
| BmsI | GCATC | 5 cut(s) | 52, 265, 721, 783, 810 |
| BmuI | ACTGGG | 1 cut(s) | 858 |
| BpiI | GAAGAC | 2 cut(s) | 239, 301 |
| BpmI | CTGGAG | 1 cut(s) | 222 |
| Bpu14I | TTCGAA | 1 cut(s) | 250 |
| BpuMI | CCSGG | 2 cut(s) | 695, 808 |
| Bsa29I | ATCGAT | 1 cut(s) | 490 |
| BsaAI | YACGTR | 1 cut(s) | 555 |
| BsaBI | GATNNNNATC | 1 cut(s) | 516 |
| BsaI | GGTCTC | 1 cut(s) | 47 |
| BsaJI | CCNNGG | 6 cut(s) | 205, 404, 771, 807, 936, 1062 |
| BsaWI | WCCGGW | 2 cut(s) | 700, 988 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1043, 1073 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 100, 211, 319, 363, 470, 700, 739, 806, 807 |
| Bse118I | RCCGGY | 1 cut(s) | 700 |
| Bse1I | ACTGG | 2 cut(s) | 239, 853 |
| Bse21I | CCTNAGG | 1 cut(s) | 189 |
| Bse8I | GATNNNNATC | 1 cut(s) | 516 |
| BseBI | CCWGG | 1 cut(s) | 938 |
| BseCI | ATCGAT | 1 cut(s) | 490 |
| BseDI | CCNNGG | 6 cut(s) | 205, 404, 771, 807, 936, 1062 |
| BseGI | GGATG | 2 cut(s) | 757, 798 |
| BseJI | GATNNNNATC | 1 cut(s) | 516 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 100, 211, 319, 363, 470, 700, 739, 806, 807 |
| BseMII | CTCAG | 4 cut(s) | 105, 667, 753, 891 |
| BseNI | ACTGG | 2 cut(s) | 239, 853 |
| BseRI | GAGGAG | 2 cut(s) | 456, 1079 |
| BseSI | GKGCMC | 1 cut(s) | 187 |
| BseXI | GCAGC | 1 cut(s) | 16 |
| Bsh1285I | CGRYCG | 2 cut(s) | 589, 728 |
| BshFI | GGCC | 3 cut(s) | 125, 935, 995 |
| BshNI | GGYRCC | 3 cut(s) | 751, 940, 1079 |
| BshTI | ACCGGT | 1 cut(s) | 700 |
| BshVI | ATCGAT | 1 cut(s) | 490 |
| BsiEI | CGRYCG | 2 cut(s) | 589, 728 |
| BsiHKAI | GWGCWC | 1 cut(s) | 187 |
| BsiSI | CCGG | 4 cut(s) | 695, 701, 807, 989 |
| BslFI | GGGAC | 2 cut(s) | 380, 1070 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 100, 211, 319, 363, 470, 700, 739, 806, 807 |
| BsmAI | GTCTC | 3 cut(s) | 47, 79, 110 |
| BsmBI | CGTCTC | 1 cut(s) | 110 |
| BsmFI | GGGAC | 2 cut(s) | 380, 1070 |
| BsmI | GAATGC | 1 cut(s) | 973 |
| BsnI | GGCC | 3 cut(s) | 125, 935, 995 |
| Bso31I | GGTCTC | 1 cut(s) | 47 |
| Bsp119I | TTCGAA | 1 cut(s) | 250 |
| Bsp1286I | GDGCHC | 2 cut(s) | 187, 640 |
| Bsp1407I | TGTACA | 1 cut(s) | 957 |
| Bsp143I | GATC | 8 cut(s) | 15, 133, 296, 517, 542, 586, 664, 725 |
| BspACI | CCGC | 4 cut(s) | 154, 733, 892, 932 |
| BspANI | GGCC | 3 cut(s) | 125, 935, 995 |
| BspCNI | CTCAG | 4 cut(s) | 106, 666, 754, 892 |
| BspDI | ATCGAT | 1 cut(s) | 490 |
| BspLI | GGNNCC | 6 cut(s) | 368, 462, 699, 753, 942, 1081 |
| BspPI | GGATC | 4 cut(s) | 10, 304, 550, 672 |
| BspT104I | TTCGAA | 1 cut(s) | 250 |
| BspT107I | GGYRCC | 3 cut(s) | 751, 940, 1079 |
| BspTNI | GGTCTC | 1 cut(s) | 47 |
| BsrBI | CCGCTC | 1 cut(s) | 932 |
| BsrFI | RCCGGY | 1 cut(s) | 700 |
| BsrGI | TGTACA | 1 cut(s) | 957 |
| BsrI | ACTGG | 2 cut(s) | 239, 853 |
| BssAI | RCCGGY | 1 cut(s) | 700 |
| BssECI | CCNNGG | 6 cut(s) | 205, 404, 771, 807, 936, 1062 |
| BssMI | GATC | 8 cut(s) | 15, 133, 296, 517, 542, 586, 664, 725 |
| BssSI | CACGAG | 1 cut(s) | 468 |
| BssT1I | CCWWGG | 2 cut(s) | 404, 771 |
| Bst2BI | CACGAG | 1 cut(s) | 468 |
| Bst2UI | CCWGG | 1 cut(s) | 938 |
| Bst4CI | ACNGT | 6 cut(s) | 32, 148, 305, 381, 604, 1084 |
| BstAUI | TGTACA | 1 cut(s) | 957 |
| BstBAI | YACGTR | 1 cut(s) | 555 |
| BstBI | TTCGAA | 1 cut(s) | 250 |
| BstDEI | CTNAG | 6 cut(s) | 114, 189, 573, 653, 762, 900 |
| BstDSI | CCRYGG | 1 cut(s) | 205 |
| BstEII | GGTNACC | 1 cut(s) | 703 |
| BstF5I | GGATG | 2 cut(s) | 757, 798 |
| BstHHI | GCGC | 1 cut(s) | 67 |
| BstKTI | GATC | 8 cut(s) | 18, 136, 299, 520, 545, 589, 667, 728 |
| BstMAI | GTCTC | 3 cut(s) | 47, 79, 110 |
| BstMBI | GATC | 8 cut(s) | 15, 133, 296, 517, 542, 586, 664, 725 |
| BstMCI | CGRYCG | 2 cut(s) | 589, 728 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 344, 938, 1043 |
| BstNI | CCWGG | 1 cut(s) | 938 |
| BstPI | GGTNACC | 1 cut(s) | 703 |
| BstSCI | CCNGG | 3 cut(s) | 693, 806, 936 |
| BstSFI | CTRYAG | 1 cut(s) | 291 |
| BstSLI | GKGCMC | 1 cut(s) | 187 |
| BstV1I | GCAGC | 1 cut(s) | 16 |
| BstV2I | GAAGAC | 2 cut(s) | 239, 301 |
| BstX2I | RGATCY | 4 cut(s) | 15, 133, 296, 542 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 778, 848 |
| BstYI | RGATCY | 4 cut(s) | 15, 133, 296, 542 |
| Bsu15I | ATCGAT | 1 cut(s) | 490 |
| Bsu36I | CCTNAGG | 1 cut(s) | 189 |
| BsuRI | GGCC | 3 cut(s) | 125, 935, 995 |
| BsuTUI | ATCGAT | 1 cut(s) | 490 |
| BtgI | CCRYGG | 1 cut(s) | 205 |
| BtgZI | GCGATG | 1 cut(s) | 698 |
| BtsCI | GGATG | 2 cut(s) | 757, 798 |
| BtsI | GCAGTG | 1 cut(s) | 667 |
| BtsIMutI | CAGTG | 1 cut(s) | 667 |
| CfoI | GCGC | 1 cut(s) | 67 |
| Cfr10I | RCCGGY | 1 cut(s) | 700 |
| Cfr13I | GGNCC | 5 cut(s) | 367, 461, 558, 934, 1013 |
| ClaI | ATCGAT | 1 cut(s) | 490 |
| Csp6I | GTAC | 3 cut(s) | 354, 752, 958 |
| CspAI | ACCGGT | 1 cut(s) | 700 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 386, 421 |
| CviAII | CATG | 1 cut(s) | 529 |
| CviQI | GTAC | 3 cut(s) | 354, 752, 958 |
| DdeI | CTNAG | 6 cut(s) | 114, 189, 573, 653, 762, 900 |
| DpnI | GATC | 8 cut(s) | 17, 135, 298, 519, 544, 588, 666, 727 |
| DpnII | GATC | 8 cut(s) | 15, 133, 296, 517, 542, 586, 664, 725 |
| Eco130I | CCWWGG | 2 cut(s) | 404, 771 |
| Eco24I | GRGCYC | 1 cut(s) | 640 |
| Eco31I | GGTCTC | 1 cut(s) | 47 |
| Eco32I | GATATC | 1 cut(s) | 1071 |
| Eco47I | GGWCC | 4 cut(s) | 367, 461, 558, 1013 |
| Eco81I | CCTNAGG | 1 cut(s) | 189 |
| Eco91I | GGTNACC | 1 cut(s) | 703 |
| EcoO109I | RGGNCCY | 3 cut(s) | 367, 461, 1013 |
| EcoO65I | GGTNACC | 1 cut(s) | 703 |
| EcoRI | GAATTC | 1 cut(s) | 871 |
| EcoRII | CCWGG | 1 cut(s) | 936 |
| EcoRV | GATATC | 1 cut(s) | 1071 |
| EcoT14I | CCWWGG | 2 cut(s) | 404, 771 |
| EcoT38I | GRGCYC | 1 cut(s) | 640 |
| ErhI | CCWWGG | 2 cut(s) | 404, 771 |
| Esp3I | CGTCTC | 1 cut(s) | 110 |
| FaeI | CATG | 1 cut(s) | 532 |
| FaiI | YATR | 9 cut(s) | 50, 256, 270, 272, 330, 524, 530, 846, 863 |
| FaqI | GGGAC | 2 cut(s) | 380, 1070 |
| FatI | CATG | 1 cut(s) | 528 |
| Fnu4HI | GCNGC | 4 cut(s) | 5, 154, 893, 933 |
| FokI | GGATG | 2 cut(s) | 744, 805 |
| FriOI | GRGCYC | 1 cut(s) | 640 |
| Fsp4HI | GCNGC | 4 cut(s) | 5, 154, 893, 933 |
| FspBI | CTAG | 4 cut(s) | 96, 410, 633, 1008 |
| GlaI | GCGC | 1 cut(s) | 66 |
| GluI | GCNGC | 4 cut(s) | 5, 154, 893, 933 |
| GsuI | CTGGAG | 1 cut(s) | 222 |
| HaeIII | GGCC | 3 cut(s) | 125, 935, 995 |
| HapII | CCGG | 4 cut(s) | 695, 701, 807, 989 |
| HhaI | GCGC | 1 cut(s) | 67 |
| Hin1II | CATG | 1 cut(s) | 532 |
| Hin6I | GCGC | 1 cut(s) | 65 |
| HinP1I | GCGC | 1 cut(s) | 65 |
| HincII | GTYRAC | 2 cut(s) | 141, 691 |
| HindII | GTYRAC | 2 cut(s) | 141, 691 |
| HinfI | GANTC | 6 cut(s) | 333, 439, 474, 487, 492, 582 |
| HpaI | GTTAAC | 1 cut(s) | 691 |
| HpaII | CCGG | 4 cut(s) | 695, 701, 807, 989 |
| HphI | GGTGA | 3 cut(s) | 120, 431, 634 |
| Hpy166II | GTNNAC | 4 cut(s) | 141, 185, 691, 960 |
| Hpy188I | TCNGA | 6 cut(s) | 115, 301, 497, 664, 1032, 1063 |
| Hpy188III | TCNNGA | 4 cut(s) | 13, 82, 761, 1087 |
| Hpy8I | GTNNAC | 4 cut(s) | 141, 185, 691, 960 |
| Hpy99I | CGWCG | 1 cut(s) | 1093 |
| HpyAV | CCTTC | 6 cut(s) | 380, 410, 825, 911, 954, 1026 |
| HpyCH4III | ACNGT | 6 cut(s) | 32, 148, 305, 381, 604, 1084 |
| HpyCH4IV | ACGT | 3 cut(s) | 119, 554, 1091 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 185, 278, 712, 823, 971 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 344, 938, 1043 |
| HpyF3I | CTNAG | 6 cut(s) | 114, 189, 573, 653, 762, 900 |
| HpySE526I | ACGT | 3 cut(s) | 119, 554, 1091 |
| Hsp92II | CATG | 1 cut(s) | 532 |
| HspAI | GCGC | 1 cut(s) | 65 |
| KpnI | GGTACC | 1 cut(s) | 755 |
| KspAI | GTTAAC | 1 cut(s) | 691 |
| Kzo9I | GATC | 8 cut(s) | 15, 133, 296, 517, 542, 586, 664, 725 |
| LmnI | GCTCC | 1 cut(s) | 577 |
| Lsp1109I | GCAGC | 1 cut(s) | 16 |
| LweI | GCATC | 5 cut(s) | 52, 265, 721, 783, 810 |
| MaeI | CTAG | 4 cut(s) | 96, 410, 633, 1008 |
| MaeII | ACGT | 3 cut(s) | 119, 554, 1091 |
| MaeIII | GTNAC | 3 cut(s) | 419, 440, 703 |
| MalI | GATC | 8 cut(s) | 17, 135, 298, 519, 544, 588, 666, 727 |
| MbiI | CCGCTC | 1 cut(s) | 932 |
| MboI | GATC | 8 cut(s) | 15, 133, 296, 517, 542, 586, 664, 725 |
| MboII | GAAGA | 6 cut(s) | 239, 301, 365, 939, 976, 1011 |
| MflI | RGATCY | 4 cut(s) | 15, 133, 296, 542 |
| MhlI | GDGCHC | 2 cut(s) | 187, 640 |
| MluCI | AATT | 1 cut(s) | 871 |
| MlyI | GAGTC | 3 cut(s) | 448, 483, 576 |
| MmeI | TCCRAC | 3 cut(s) | 520, 808, 848 |
| MroXI | GAANNNNTTC | 2 cut(s) | 256, 491 |
| MseI | TTAA | 2 cut(s) | 690, 738 |
| MslI | CAYNNNNRTG | 2 cut(s) | 273, 527 |
| MspA1I | CMGCKG | 1 cut(s) | 892 |
| MspI | CCGG | 4 cut(s) | 695, 701, 807, 989 |
| MspR9I | CCNGG | 3 cut(s) | 695, 808, 938 |
| Mva1269I | GAATGC | 1 cut(s) | 973 |
| MvaI | CCWGG | 1 cut(s) | 938 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 344, 938, 1043 |
| NciI | CCSGG | 2 cut(s) | 695, 808 |
| NdeII | GATC | 8 cut(s) | 15, 133, 296, 517, 542, 586, 664, 725 |
| NlaIII | CATG | 1 cut(s) | 532 |
| NlaIV | GGNNCC | 6 cut(s) | 368, 462, 699, 753, 942, 1081 |
| NmuCI | GTSAC | 2 cut(s) | 419, 440 |
| NspV | TTCGAA | 1 cut(s) | 250 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 721 |
| PctI | GAATGC | 1 cut(s) | 973 |
| PdmI | GAANNNNTTC | 2 cut(s) | 256, 491 |
| PfeI | GAWTC | 3 cut(s) | 333, 487, 492 |
| PflFI | GACNNNGTC | 1 cut(s) | 305 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 363 |
| PinAI | ACCGGT | 1 cut(s) | 700 |
| PkrI | GCNGC | 4 cut(s) | 6, 155, 894, 934 |
| Ple19I | CGATCG | 2 cut(s) | 589, 728 |
| PleI | GAGTC | 3 cut(s) | 447, 482, 576 |
| PpsI | GAGTC | 3 cut(s) | 447, 482, 576 |
| Ppu21I | YACGTR | 1 cut(s) | 555 |
| PpuMI | RGGWCCY | 3 cut(s) | 367, 461, 1013 |
| Psp5II | RGGWCCY | 3 cut(s) | 367, 461, 1013 |
| Psp6I | CCWGG | 1 cut(s) | 936 |
| PspEI | GGTNACC | 1 cut(s) | 703 |
| PspGI | CCWGG | 1 cut(s) | 936 |
| PspN4I | GGNNCC | 6 cut(s) | 368, 462, 699, 753, 942, 1081 |
| PspPI | GGNCC | 5 cut(s) | 367, 461, 558, 934, 1013 |
| PspPPI | RGGWCCY | 3 cut(s) | 367, 461, 1013 |
| PsuI | RGATCY | 4 cut(s) | 15, 133, 296, 542 |
| PsyI | GACNNNGTC | 1 cut(s) | 305 |
| PvuI | CGATCG | 2 cut(s) | 589, 728 |
| RsaI | GTAC | 3 cut(s) | 355, 753, 959 |
| RsaNI | GTAC | 3 cut(s) | 354, 752, 958 |
| RseI | CAYNNNNRTG | 2 cut(s) | 273, 527 |
| SaqAI | TTAA | 2 cut(s) | 690, 738 |
| SatI | GCNGC | 4 cut(s) | 5, 154, 893, 933 |
| Sau3AI | GATC | 8 cut(s) | 15, 133, 296, 517, 542, 586, 664, 725 |
| Sau96I | GGNCC | 5 cut(s) | 367, 461, 558, 934, 1013 |
| SchI | GAGTC | 3 cut(s) | 448, 483, 576 |
| ScrFI | CCNGG | 3 cut(s) | 695, 808, 938 |
| SduI | GDGCHC | 2 cut(s) | 187, 640 |
| SfaNI | GCATC | 5 cut(s) | 52, 265, 721, 783, 810 |
| SfcI | CTRYAG | 1 cut(s) | 291 |
| SfuI | TTCGAA | 1 cut(s) | 250 |
| SinI | GGWCC | 4 cut(s) | 367, 461, 558, 1013 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 273, 527 |
| Sse9I | AATT | 1 cut(s) | 871 |
| SsiI | CCGC | 4 cut(s) | 154, 733, 892, 932 |
| SspI | AATATT | 1 cut(s) | 435 |
| SspMI | CTAG | 4 cut(s) | 96, 410, 633, 1008 |
| StyD4I | CCNGG | 3 cut(s) | 693, 806, 936 |
| StyI | CCWWGG | 2 cut(s) | 404, 771 |
| TaaI | ACNGT | 6 cut(s) | 32, 148, 305, 381, 604, 1084 |
| TaiI | ACGT | 3 cut(s) | 122, 557, 1094 |
| TaqI | TCGA | 6 cut(s) | 34, 250, 376, 490, 585, 724 |
| TaqII | GACCGA | 1 cut(s) | 940 |
| TasI | AATT | 1 cut(s) | 871 |
| TatI | WGTACW | 1 cut(s) | 957 |
| TauI | GCSGC | 3 cut(s) | 156, 895, 935 |
| TfiI | GAWTC | 3 cut(s) | 333, 487, 492 |
| Tru1I | TTAA | 2 cut(s) | 690, 738 |
| Tru9I | TTAA | 2 cut(s) | 690, 738 |
| TscAI | CASTG | 1 cut(s) | 674 |
| TseFI | GTSAC | 2 cut(s) | 419, 440 |
| TseI | GCWGC | 1 cut(s) | 4 |
| Tsp45I | GTSAC | 2 cut(s) | 419, 440 |
| TspDTI | ATGAA | 2 cut(s) | 500, 920 |
| TspGWI | ACGGA | 1 cut(s) | 302 |
| TspRI | CASTG | 1 cut(s) | 674 |
| Tth111I | GACNNNGTC | 1 cut(s) | 305 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 363 |
| VneI | GTGCAC | 1 cut(s) | 183 |
| VpaK11BI | GGWCC | 4 cut(s) | 367, 461, 558, 1013 |
| XapI | RAATTY | 1 cut(s) | 871 |
| XmnI | GAANNNNTTC | 2 cut(s) | 256, 491 |
| XspI | CTAG | 4 cut(s) | 96, 410, 633, 1008 |