ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 396 |
| AatII | GACGTC | 1 cut(s) | 279 |
| Acc36I | ACCTGC | 1 cut(s) | 648 |
| AccB1I | GGYRCC | 1 cut(s) | 305 |
| AccI | GTMKAC | 1 cut(s) | 510 |
| AccIII | TCCGGA | 1 cut(s) | 249 |
| AciI | CCGC | 3 cut(s) | 344, 707, 733 |
| AcsI | RAATTY | 2 cut(s) | 367, 601 |
| AcuI | CTGAAG | 1 cut(s) | 321 |
| AcyI | GRCGYC | 1 cut(s) | 276 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 442, 613, 633, 806 |
| AgsI | TTSAA | 4 cut(s) | 53, 144, 740, 782 |
| AjnI | CCWGG | 1 cut(s) | 404 |
| AluBI | AGCT | 5 cut(s) | 125, 386, 503, 520, 619 |
| AluI | AGCT | 5 cut(s) | 125, 386, 503, 520, 619 |
| Alw26I | GTCTC | 1 cut(s) | 251 |
| Ama87I | CYCGRG | 2 cut(s) | 189, 633 |
| Aor13HI | TCCGGA | 1 cut(s) | 249 |
| AoxI | GGCC | 2 cut(s) | 37, 701 |
| ApeKI | GCWGC | 2 cut(s) | 4, 709 |
| ApoI | RAATTY | 2 cut(s) | 367, 601 |
| AseI | ATTAAT | 1 cut(s) | 771 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 491 |
| AspS9I | GGNCC | 3 cut(s) | 461, 586, 660 |
| AsuC2I | CCSGG | 2 cut(s) | 634, 635 |
| AsuHPI | GGTGA | 3 cut(s) | 177, 634, 821 |
| AvaI | CYCGRG | 2 cut(s) | 189, 633 |
| AvaII | GGWCC | 3 cut(s) | 461, 586, 660 |
| BanI | GGYRCC | 1 cut(s) | 305 |
| BbsI | GAAGAC | 1 cut(s) | 392 |
| BbvI | GCAGC | 2 cut(s) | 16, 696 |
| BccI | CCATC | 1 cut(s) | 164 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 269, 303 |
| BciT130I | CCWGG | 1 cut(s) | 406 |
| BcnI | CCSGG | 2 cut(s) | 634, 635 |
| BcoDI | GTCTC | 1 cut(s) | 251 |
| BfaI | CTAG | 5 cut(s) | 68, 122, 383, 410, 723 |
| BfmI | CTRYAG | 1 cut(s) | 291 |
| BfuAI | ACCTGC | 1 cut(s) | 648 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 344 |
| BisI | GCNGC | 3 cut(s) | 5, 345, 710 |
| BlsI | GCNGC | 3 cut(s) | 6, 346, 711 |
| Bme1390I | CCNGG | 3 cut(s) | 406, 634, 635 |
| Bme18I | GGWCC | 3 cut(s) | 461, 586, 660 |
| BmeT110I | CYCGRG | 2 cut(s) | 189, 633 |
| BmgT120I | GGNCC | 3 cut(s) | 461, 586, 660 |
| BmiI | GGNNCC | 2 cut(s) | 237, 307 |
| BmrFI | CCNGG | 3 cut(s) | 406, 634, 635 |
| BmsI | GCATC | 1 cut(s) | 52 |
| BoxI | GACNNNNGTC | 2 cut(s) | 201, 669 |
| BpiI | GAAGAC | 1 cut(s) | 392 |
| BpmI | CTGGAG | 1 cut(s) | 438 |
| BpuMI | CCSGG | 2 cut(s) | 634, 635 |
| BsaHI | GRCGYC | 1 cut(s) | 276 |
| BsaJI | CCNNGG | 2 cut(s) | 404, 633 |
| BsaWI | WCCGGW | 2 cut(s) | 238, 249 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 442, 613, 633, 806 |
| Bse1I | ACTGG | 2 cut(s) | 811, 853 |
| BseAI | TCCGGA | 1 cut(s) | 249 |
| BseBI | CCWGG | 1 cut(s) | 406 |
| BseDI | CCNNGG | 2 cut(s) | 404, 633 |
| BseGI | GGATG | 2 cut(s) | 67, 798 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 442, 613, 633, 806 |
| BseMII | CTCAG | 3 cut(s) | 71, 252, 644 |
| BseNI | ACTGG | 2 cut(s) | 811, 853 |
| BseXI | GCAGC | 2 cut(s) | 16, 696 |
| BseYI | CCCAGC | 1 cut(s) | 95 |
| BsgI | GTGCAG | 1 cut(s) | 695 |
| BshFI | GGCC | 2 cut(s) | 39, 703 |
| BshNI | GGYRCC | 1 cut(s) | 305 |
| BsiHKCI | CYCGRG | 2 cut(s) | 189, 633 |
| BsiSI | CCGG | 3 cut(s) | 239, 250, 634 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 442, 613, 633, 806 |
| BsmAI | GTCTC | 1 cut(s) | 251 |
| BsmBI | CGTCTC | 1 cut(s) | 251 |
| BsnI | GGCC | 2 cut(s) | 39, 703 |
| BsoBI | CYCGRG | 2 cut(s) | 189, 633 |
| Bsp13I | TCCGGA | 1 cut(s) | 249 |
| Bsp143I | GATC | 2 cut(s) | 133, 349 |
| BspACI | CCGC | 3 cut(s) | 344, 707, 733 |
| BspANI | GGCC | 2 cut(s) | 39, 703 |
| BspCNI | CTCAG | 3 cut(s) | 70, 253, 645 |
| BspEI | TCCGGA | 1 cut(s) | 249 |
| BspLI | GGNNCC | 2 cut(s) | 237, 307 |
| BspMI | ACCTGC | 1 cut(s) | 648 |
| BspT107I | GGYRCC | 1 cut(s) | 305 |
| BsrI | ACTGG | 2 cut(s) | 811, 853 |
| BssECI | CCNNGG | 2 cut(s) | 404, 633 |
| BssMI | GATC | 2 cut(s) | 133, 349 |
| BssNI | GRCGYC | 1 cut(s) | 276 |
| Bst2UI | CCWGG | 1 cut(s) | 406 |
| Bst4CI | ACNGT | 2 cut(s) | 515, 590 |
| Bst6I | CTCTTC | 1 cut(s) | 681 |
| BstACI | GRCGYC | 1 cut(s) | 276 |
| BstDEI | CTNAG | 4 cut(s) | 57, 261, 653, 863 |
| BstEII | GGTNACC | 1 cut(s) | 809 |
| BstF5I | GGATG | 2 cut(s) | 67, 798 |
| BstKTI | GATC | 2 cut(s) | 136, 352 |
| BstMAI | GTCTC | 1 cut(s) | 251 |
| BstMBI | GATC | 2 cut(s) | 133, 349 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 136, 344, 709 |
| BstNI | CCWGG | 1 cut(s) | 406 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 201, 669 |
| BstPI | GGTNACC | 1 cut(s) | 809 |
| BstSCI | CCNGG | 3 cut(s) | 404, 632, 633 |
| BstSFI | CTRYAG | 1 cut(s) | 291 |
| BstV1I | GCAGC | 2 cut(s) | 16, 696 |
| BstV2I | GAAGAC | 1 cut(s) | 392 |
| BsuRI | GGCC | 2 cut(s) | 39, 703 |
| BtsCI | GGATG | 2 cut(s) | 67, 798 |
| BveI | ACCTGC | 1 cut(s) | 648 |
| Cfr13I | GGNCC | 3 cut(s) | 461, 586, 660 |
| Cfr9I | CCCGGG | 1 cut(s) | 633 |
| CseI | GACGC | 1 cut(s) | 233 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 439, 474 |
| DdeI | CTNAG | 4 cut(s) | 57, 261, 653, 863 |
| DpnI | GATC | 2 cut(s) | 135, 351 |
| DpnII | GATC | 2 cut(s) | 133, 349 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 396 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 396 |
| Eam1104I | CTCTTC | 1 cut(s) | 681 |
| EarI | CTCTTC | 1 cut(s) | 681 |
| Eco147I | AGGCCT | 2 cut(s) | 39, 703 |
| Eco47I | GGWCC | 3 cut(s) | 461, 586, 660 |
| Eco57I | CTGAAG | 1 cut(s) | 321 |
| Eco88I | CYCGRG | 2 cut(s) | 189, 633 |
| Eco91I | GGTNACC | 1 cut(s) | 809 |
| EcoO65I | GGTNACC | 1 cut(s) | 809 |
| EcoRII | CCWGG | 1 cut(s) | 404 |
| Esp3I | CGTCTC | 1 cut(s) | 251 |
| FauNDI | CATATG | 1 cut(s) | 179 |
| FblI | GTMKAC | 1 cut(s) | 510 |
| Fnu4HI | GCNGC | 3 cut(s) | 5, 345, 710 |
| FokI | GGATG | 2 cut(s) | 74, 805 |
| Fsp4HI | GCNGC | 3 cut(s) | 5, 345, 710 |
| FspBI | CTAG | 5 cut(s) | 68, 122, 383, 410, 723 |
| GluI | GCNGC | 3 cut(s) | 5, 345, 710 |
| GsaI | CCCAGC | 1 cut(s) | 99 |
| GsuI | CTGGAG | 1 cut(s) | 438 |
| HaeIII | GGCC | 2 cut(s) | 39, 703 |
| HapII | CCGG | 3 cut(s) | 239, 250, 634 |
| HgaI | GACGC | 1 cut(s) | 233 |
| Hin1I | GRCGYC | 1 cut(s) | 276 |
| HindIII | AAGCTT | 1 cut(s) | 501 |
| HinfI | GANTC | 7 cut(s) | 16, 91, 174, 265, 315, 394, 492 |
| HpaII | CCGG | 3 cut(s) | 239, 250, 634 |
| HphI | GGTGA | 3 cut(s) | 177, 634, 821 |
| Hpy166II | GTNNAC | 4 cut(s) | 185, 464, 511, 570 |
| Hpy188I | TCNGA | 7 cut(s) | 115, 262, 301, 354, 654, 664, 763 |
| Hpy188III | TCNNGA | 4 cut(s) | 59, 191, 250, 695 |
| Hpy8I | GTNNAC | 4 cut(s) | 185, 464, 511, 570 |
| Hpy99I | CGWCG | 2 cut(s) | 278, 281 |
| HpyAV | CCTTC | 1 cut(s) | 296 |
| HpyCH4III | ACNGT | 2 cut(s) | 515, 590 |
| HpyCH4IV | ACGT | 2 cut(s) | 276, 727 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 712, 768 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 136, 344, 709 |
| HpyF3I | CTNAG | 4 cut(s) | 57, 261, 653, 863 |
| HpySE526I | ACGT | 2 cut(s) | 276, 727 |
| Hsp92I | GRCGYC | 1 cut(s) | 276 |
| Kpn2I | TCCGGA | 1 cut(s) | 249 |
| Kzo9I | GATC | 2 cut(s) | 133, 349 |
| LmnI | GCTCC | 1 cut(s) | 616 |
| Lsp1109I | GCAGC | 2 cut(s) | 16, 696 |
| LweI | GCATC | 1 cut(s) | 52 |
| MaeI | CTAG | 5 cut(s) | 68, 122, 383, 410, 723 |
| MaeII | ACGT | 2 cut(s) | 276, 727 |
| MaeIII | GTNAC | 3 cut(s) | 227, 750, 809 |
| MalI | GATC | 2 cut(s) | 135, 351 |
| MboI | GATC | 2 cut(s) | 133, 349 |
| MboII | GAAGA | 3 cut(s) | 392, 668, 752 |
| MluCI | AATT | 3 cut(s) | 28, 367, 601 |
| MlyI | GAGTC | 1 cut(s) | 183 |
| MmeI | TCCRAC | 2 cut(s) | 687, 770 |
| MroI | TCCGGA | 1 cut(s) | 249 |
| MroXI | GAANNNNTTC | 1 cut(s) | 491 |
| MseI | TTAA | 4 cut(s) | 12, 426, 690, 771 |
| MspA1I | CMGCKG | 2 cut(s) | 344, 709 |
| MspI | CCGG | 3 cut(s) | 239, 250, 634 |
| MspR9I | CCNGG | 3 cut(s) | 406, 634, 635 |
| MvaI | CCWGG | 1 cut(s) | 406 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 136, 344, 709 |
| NciI | CCSGG | 2 cut(s) | 634, 635 |
| NdeI | CATATG | 1 cut(s) | 179 |
| NdeII | GATC | 2 cut(s) | 133, 349 |
| NlaIV | GGNNCC | 2 cut(s) | 237, 307 |
| NmuCI | GTSAC | 1 cut(s) | 809 |
| PaeR7I | CTCGAG | 1 cut(s) | 189 |
| PceI | AGGCCT | 2 cut(s) | 39, 703 |
| PdmI | GAANNNNTTC | 1 cut(s) | 491 |
| PfeI | GAWTC | 6 cut(s) | 16, 91, 265, 315, 394, 492 |
| PkrI | GCNGC | 3 cut(s) | 6, 346, 711 |
| PleI | GAGTC | 1 cut(s) | 182 |
| PpsI | GAGTC | 1 cut(s) | 182 |
| PshAI | GACNNNNGTC | 2 cut(s) | 201, 669 |
| PshBI | ATTAAT | 1 cut(s) | 771 |
| Psp6I | CCWGG | 1 cut(s) | 404 |
| PspEI | GGTNACC | 1 cut(s) | 809 |
| PspFI | CCCAGC | 1 cut(s) | 95 |
| PspGI | CCWGG | 1 cut(s) | 404 |
| PspN4I | GGNNCC | 2 cut(s) | 237, 307 |
| PspPI | GGNCC | 3 cut(s) | 461, 586, 660 |
| SaqAI | TTAA | 4 cut(s) | 12, 426, 690, 771 |
| SatI | GCNGC | 3 cut(s) | 5, 345, 710 |
| Sau3AI | GATC | 2 cut(s) | 133, 349 |
| Sau96I | GGNCC | 3 cut(s) | 461, 586, 660 |
| SchI | GAGTC | 1 cut(s) | 183 |
| ScrFI | CCNGG | 3 cut(s) | 406, 634, 635 |
| SfaNI | GCATC | 1 cut(s) | 52 |
| SfcI | CTRYAG | 1 cut(s) | 291 |
| Sfr274I | CTCGAG | 1 cut(s) | 189 |
| SinI | GGWCC | 3 cut(s) | 461, 586, 660 |
| SlaI | CTCGAG | 1 cut(s) | 189 |
| SmaI | CCCGGG | 1 cut(s) | 635 |
| SmlI | CTYRAG | 1 cut(s) | 189 |
| SmoI | CTYRAG | 1 cut(s) | 189 |
| Sse9I | AATT | 3 cut(s) | 28, 367, 601 |
| SseBI | AGGCCT | 2 cut(s) | 39, 703 |
| SsiI | CCGC | 3 cut(s) | 344, 707, 733 |
| SspI | AATATT | 2 cut(s) | 49, 76 |
| SspMI | CTAG | 5 cut(s) | 68, 122, 383, 410, 723 |
| StuI | AGGCCT | 2 cut(s) | 39, 703 |
| StyD4I | CCNGG | 3 cut(s) | 404, 632, 633 |
| TaaI | ACNGT | 2 cut(s) | 515, 590 |
| TaiI | ACGT | 2 cut(s) | 279, 730 |
| TaqI | TCGA | 6 cut(s) | 34, 82, 190, 273, 279, 313 |
| TasI | AATT | 3 cut(s) | 28, 367, 601 |
| TauI | GCSGC | 1 cut(s) | 347 |
| TfiI | GAWTC | 6 cut(s) | 16, 91, 265, 315, 394, 492 |
| Tru1I | TTAA | 4 cut(s) | 12, 426, 690, 771 |
| Tru9I | TTAA | 4 cut(s) | 12, 426, 690, 771 |
| TseFI | GTSAC | 1 cut(s) | 809 |
| TseI | GCWGC | 2 cut(s) | 4, 709 |
| Tsp45I | GTSAC | 1 cut(s) | 809 |
| TspDTI | ATGAA | 3 cut(s) | 140, 444, 500 |
| TspGWI | ACGGA | 1 cut(s) | 485 |
| TspMI | CCCGGG | 1 cut(s) | 633 |
| VpaK11BI | GGWCC | 3 cut(s) | 461, 586, 660 |
| VspI | ATTAAT | 1 cut(s) | 771 |
| XapI | RAATTY | 2 cut(s) | 367, 601 |
| XhoI | CTCGAG | 1 cut(s) | 189 |
| XmaI | CCCGGG | 1 cut(s) | 633 |
| XmiI | GTMKAC | 1 cut(s) | 510 |
| XmnI | GAANNNNTTC | 1 cut(s) | 491 |
| XspI | CTAG | 5 cut(s) | 68, 122, 383, 410, 723 |
| ZraI | GACGTC | 1 cut(s) | 277 |