Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 51 |
| AclI | AACGTT | 1 cut(s) | 133 |
| AclWI | GGATC | 3 cut(s) | 280, 320, 333 |
| AcsI | RAATTY | 1 cut(s) | 385 |
| AgsI | TTSAA | 2 cut(s) | 14, 94 |
| AluBI | AGCT | 2 cut(s) | 194, 314 |
| AluI | AGCT | 2 cut(s) | 194, 314 |
| Alw26I | GTCTC | 4 cut(s) | 70, 110, 277, 376 |
| AlwI | GGATC | 3 cut(s) | 280, 320, 333 |
| AoxI | GGCC | 2 cut(s) | 333, 429 |
| ApoI | RAATTY | 1 cut(s) | 385 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 193 |
| AspS9I | GGNCC | 2 cut(s) | 334, 430 |
| AsuHPI | GGTGA | 1 cut(s) | 173 |
| AsuII | TTCGAA | 1 cut(s) | 197 |
| BamHI | GGATCC | 1 cut(s) | 325 |
| BccI | CCATC | 1 cut(s) | 192 |
| BcoDI | GTCTC | 4 cut(s) | 70, 110, 277, 376 |
| BfaI | CTAG | 1 cut(s) | 366 |
| BglII | AGATCT | 1 cut(s) | 391 |
| BisI | GCNGC | 1 cut(s) | 51 |
| BlpI | GCTNAGC | 1 cut(s) | 54 |
| BlsI | GCNGC | 1 cut(s) | 52 |
| BmgT120I | GGNCC | 2 cut(s) | 334, 430 |
| BmiI | GGNNCC | 2 cut(s) | 215, 327 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 54 |
| Bpu14I | TTCGAA | 1 cut(s) | 197 |
| BsaBI | GATNNNNATC | 1 cut(s) | 284 |
| BsaI | GGTCTC | 1 cut(s) | 376 |
| BsaWI | WCCGGW | 1 cut(s) | 87 |
| Bse1I | ACTGG | 2 cut(s) | 27, 254 |
| Bse8I | GATNNNNATC | 1 cut(s) | 284 |
| BseGI | GGATG | 2 cut(s) | 31, 259 |
| BseJI | GATNNNNATC | 1 cut(s) | 284 |
| BseMII | CTCAG | 3 cut(s) | 45, 228, 267 |
| BseNI | ACTGG | 2 cut(s) | 27, 254 |
| Bsh1285I | CGRYCG | 1 cut(s) | 323 |
| BshFI | GGCC | 2 cut(s) | 335, 431 |
| BsiEI | CGRYCG | 1 cut(s) | 323 |
| BsiSI | CCGG | 1 cut(s) | 88 |
| BsmAI | GTCTC | 4 cut(s) | 70, 110, 277, 376 |
| BsnI | GGCC | 2 cut(s) | 335, 431 |
| Bso31I | GGTCTC | 1 cut(s) | 376 |
| Bsp119I | TTCGAA | 1 cut(s) | 197 |
| Bsp143I | GATC | 5 cut(s) | 163, 285, 320, 325, 391 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 54 |
| BspACI | CCGC | 1 cut(s) | 51 |
| BspANI | GGCC | 2 cut(s) | 335, 431 |
| BspCNI | CTCAG | 3 cut(s) | 46, 229, 268 |
| BspLI | GGNNCC | 2 cut(s) | 215, 327 |
| BspPI | GGATC | 3 cut(s) | 280, 320, 333 |
| BspQI | GCTCTTC | 1 cut(s) | 184 |
| BspT104I | TTCGAA | 1 cut(s) | 197 |
| BspTNI | GGTCTC | 1 cut(s) | 376 |
| BsrI | ACTGG | 2 cut(s) | 27, 254 |
| BssMI | GATC | 5 cut(s) | 163, 285, 320, 325, 391 |
| Bst4CI | ACNGT | 1 cut(s) | 346 |
| Bst6I | CTCTTC | 2 cut(s) | 68, 184 |
| BstBI | TTCGAA | 1 cut(s) | 197 |
| BstDEI | CTNAG | 3 cut(s) | 54, 237, 276 |
| BstF5I | GGATG | 2 cut(s) | 31, 259 |
| BstKTI | GATC | 5 cut(s) | 166, 288, 323, 328, 394 |
| BstMAI | GTCTC | 4 cut(s) | 70, 110, 277, 376 |
| BstMBI | GATC | 5 cut(s) | 163, 285, 320, 325, 391 |
| BstMCI | CGRYCG | 1 cut(s) | 323 |
| BstX2I | RGATCY | 2 cut(s) | 325, 391 |
| BstYI | RGATCY | 2 cut(s) | 325, 391 |
| BsuRI | GGCC | 2 cut(s) | 335, 431 |
| BtsCI | GGATG | 2 cut(s) | 31, 259 |
| BtsIMutI | CAGTG | 3 cut(s) | 234, 247, 342 |
| Cfr13I | GGNCC | 2 cut(s) | 334, 430 |
| CviAII | CATG | 1 cut(s) | 382 |
| CviJI | RGCY | 6 cut(s) | 176, 194, 229, 314, 335, 431 |
| CviKI_1 | RGCY | 6 cut(s) | 176, 194, 229, 314, 335, 431 |
| DdeI | CTNAG | 3 cut(s) | 54, 237, 276 |
| DpnI | GATC | 5 cut(s) | 165, 287, 322, 327, 393 |
| DpnII | GATC | 5 cut(s) | 163, 285, 320, 325, 391 |
| Eam1104I | CTCTTC | 2 cut(s) | 68, 184 |
| EarI | CTCTTC | 2 cut(s) | 68, 184 |
| Eco31I | GGTCTC | 1 cut(s) | 376 |
| EcoO109I | RGGNCCY | 1 cut(s) | 430 |
| EcoRI | GAATTC | 1 cut(s) | 385 |
| FaeI | CATG | 1 cut(s) | 385 |
| FaiI | YATR | 4 cut(s) | 297, 383, 406, 436 |
| FatI | CATG | 1 cut(s) | 381 |
| Fnu4HI | GCNGC | 1 cut(s) | 51 |
| FokI | GGATG | 2 cut(s) | 38, 246 |
| Fsp4HI | GCNGC | 1 cut(s) | 51 |
| FspBI | CTAG | 1 cut(s) | 366 |
| GluI | GCNGC | 1 cut(s) | 51 |
| HaeIII | GGCC | 2 cut(s) | 335, 431 |
| HapII | CCGG | 1 cut(s) | 88 |
| Hin1II | CATG | 1 cut(s) | 385 |
| HinfI | GANTC | 4 cut(s) | 10, 141, 199, 299 |
| HpaII | CCGG | 1 cut(s) | 88 |
| HphI | GGTGA | 1 cut(s) | 173 |
| Hpy166II | GTNNAC | 2 cut(s) | 20, 137 |
| Hpy188I | TCNGA | 6 cut(s) | 213, 277, 311, 325, 391, 412 |
| Hpy188III | TCNNGA | 1 cut(s) | 138 |
| Hpy8I | GTNNAC | 2 cut(s) | 20, 137 |
| HpyAV | CCTTC | 3 cut(s) | 152, 187, 421 |
| HpyCH4III | ACNGT | 1 cut(s) | 346 |
| HpyCH4IV | ACGT | 1 cut(s) | 133 |
| HpyF3I | CTNAG | 3 cut(s) | 54, 237, 276 |
| HpySE526I | ACGT | 1 cut(s) | 133 |
| Hsp92II | CATG | 1 cut(s) | 385 |
| Kzo9I | GATC | 5 cut(s) | 163, 285, 320, 325, 391 |
| LguI | GCTCTTC | 1 cut(s) | 184 |
| LmnI | GCTCC | 1 cut(s) | 406 |
| LpnPI | CCDG | 6 cut(s) | 8, 101, 228, 235, 300, 342 |
| MaeI | CTAG | 1 cut(s) | 366 |
| MaeII | ACGT | 1 cut(s) | 133 |
| MaeIII | GTNAC | 2 cut(s) | 99, 167 |
| MalI | GATC | 5 cut(s) | 165, 287, 322, 327, 393 |
| MboI | GATC | 5 cut(s) | 163, 285, 320, 325, 391 |
| MboII | GAAGA | 3 cut(s) | 85, 172, 201 |
| MflI | RGATCY | 2 cut(s) | 325, 391 |
| MluCI | AATT | 3 cut(s) | 83, 219, 385 |
| MlyI | GAGTC | 2 cut(s) | 135, 308 |
| MmeI | TCCRAC | 1 cut(s) | 191 |
| MnlI | CCTC | 1 cut(s) | 232 |
| MroXI | GAANNNNTTC | 1 cut(s) | 193 |
| MseI | TTAA | 2 cut(s) | 222, 231 |
| MslI | CAYNNNNRTG | 1 cut(s) | 63 |
| MspA1I | CMGCKG | 1 cut(s) | 53 |
| MspI | CCGG | 1 cut(s) | 88 |
| NdeII | GATC | 5 cut(s) | 163, 285, 320, 325, 391 |
| NlaIII | CATG | 1 cut(s) | 385 |
| NlaIV | GGNNCC | 2 cut(s) | 215, 327 |
| NspV | TTCGAA | 1 cut(s) | 197 |
| PciSI | GCTCTTC | 1 cut(s) | 184 |
| PdmI | GAANNNNTTC | 1 cut(s) | 193 |
| PfeI | GAWTC | 2 cut(s) | 10, 199 |
| PkrI | GCNGC | 1 cut(s) | 52 |
| Ple19I | CGATCG | 1 cut(s) | 323 |
| PleI | GAGTC | 2 cut(s) | 135, 307 |
| PpsI | GAGTC | 2 cut(s) | 135, 307 |
| Psp1406I | AACGTT | 1 cut(s) | 133 |
| PspN4I | GGNNCC | 2 cut(s) | 215, 327 |
| PspPI | GGNCC | 2 cut(s) | 334, 430 |
| PsuI | RGATCY | 2 cut(s) | 325, 391 |
| PvuI | CGATCG | 1 cut(s) | 323 |
| RseI | CAYNNNNRTG | 1 cut(s) | 63 |
| SapI | GCTCTTC | 1 cut(s) | 184 |
| SaqAI | TTAA | 2 cut(s) | 222, 231 |
| SatI | GCNGC | 1 cut(s) | 51 |
| Sau3AI | GATC | 5 cut(s) | 163, 285, 320, 325, 391 |
| Sau96I | GGNCC | 2 cut(s) | 334, 430 |
| SchI | GAGTC | 2 cut(s) | 135, 308 |
| SetI | ASST | 5 cut(s) | 136, 163, 196, 219, 316 |
| SfuI | TTCGAA | 1 cut(s) | 197 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 63 |
| Sse9I | AATT | 3 cut(s) | 83, 219, 385 |
| SsiI | CCGC | 1 cut(s) | 51 |
| SspMI | CTAG | 1 cut(s) | 366 |
| TaaI | ACNGT | 1 cut(s) | 346 |
| TaiI | ACGT | 1 cut(s) | 136 |
| TaqI | TCGA | 5 cut(s) | 63, 187, 197, 302, 319 |
| TasI | AATT | 3 cut(s) | 83, 219, 385 |
| TauI | GCSGC | 1 cut(s) | 53 |
| TfiI | GAWTC | 2 cut(s) | 10, 199 |
| Tru1I | TTAA | 2 cut(s) | 222, 231 |
| Tru9I | TTAA | 2 cut(s) | 222, 231 |
| TscAI | CASTG | 3 cut(s) | 241, 254, 349 |
| TspDTI | ATGAA | 5 cut(s) | 17, 50, 81, 398, 432 |
| TspRI | CASTG | 3 cut(s) | 241, 254, 349 |
| XapI | RAATTY | 1 cut(s) | 385 |
| XmnI | GAANNNNTTC | 1 cut(s) | 193 |
| XspI | CTAG | 1 cut(s) | 366 |