Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 626 |
| AccBSI | CCGCTC | 1 cut(s) | 458 |
| AciI | CCGC | 4 cut(s) | 301, 340, 458, 643 |
| AclWI | GGATC | 3 cut(s) | 191, 363, 699 |
| AcoI | YGGCCR | 1 cut(s) | 319 |
| AcsI | RAATTY | 1 cut(s) | 19 |
| AdeI | CACNNNGTG | 1 cut(s) | 94 |
| AfaI | GTAC | 2 cut(s) | 493, 697 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 151, 626, 718 |
| AgsI | TTSAA | 2 cut(s) | 415, 560 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 460, 492, 665, 697 |
| AluBI | AGCT | 2 cut(s) | 194, 596 |
| AluI | AGCT | 2 cut(s) | 194, 596 |
| AlwI | GGATC | 3 cut(s) | 191, 363, 699 |
| AoxI | GGCC | 2 cut(s) | 319, 709 |
| ApeKI | GCWGC | 1 cut(s) | 596 |
| ApoI | RAATTY | 1 cut(s) | 19 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 732 |
| AspLEI | GCGC | 1 cut(s) | 58 |
| AspS9I | GGNCC | 1 cut(s) | 709 |
| AsuHPI | GGTGA | 1 cut(s) | 304 |
| AsuII | TTCGAA | 1 cut(s) | 736 |
| BalI | TGGCCA | 1 cut(s) | 321 |
| BbvI | GCAGC | 1 cut(s) | 583 |
| BccI | CCATC | 1 cut(s) | 330 |
| BfaI | CTAG | 3 cut(s) | 326, 444, 489 |
| BisI | GCNGC | 4 cut(s) | 341, 459, 597, 644 |
| BlsI | GCNGC | 4 cut(s) | 342, 460, 598, 645 |
| BmcAI | AGTACT | 1 cut(s) | 493 |
| BmgT120I | GGNCC | 1 cut(s) | 709 |
| BmrI | ACTGGG | 2 cut(s) | 127, 440 |
| BmuI | ACTGGG | 2 cut(s) | 127, 440 |
| BpmI | CTGGAG | 2 cut(s) | 216, 426 |
| Bpu14I | TTCGAA | 1 cut(s) | 736 |
| BpuEI | CTTGAG | 2 cut(s) | 44, 576 |
| BsaBI | GATNNNNATC | 1 cut(s) | 68 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 151, 626, 718 |
| Bse1I | ACTGG | 3 cut(s) | 133, 435, 729 |
| Bse3DI | GCAATG | 1 cut(s) | 112 |
| Bse8I | GATNNNNATC | 1 cut(s) | 68 |
| BseGI | GGATG | 2 cut(s) | 69, 277 |
| BseJI | GATNNNNATC | 1 cut(s) | 68 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 151, 626, 718 |
| BseMI | GCAATG | 1 cut(s) | 112 |
| BseMII | CTCAG | 2 cut(s) | 243, 279 |
| BseNI | ACTGG | 3 cut(s) | 133, 435, 729 |
| BseXI | GCAGC | 1 cut(s) | 583 |
| BsgI | GTGCAG | 1 cut(s) | 347 |
| BshFI | GGCC | 2 cut(s) | 321, 711 |
| BslFI | GGGAC | 5 cut(s) | 43, 121, 168, 348, 602 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 151, 626, 718 |
| BsmFI | GGGAC | 5 cut(s) | 43, 121, 168, 348, 602 |
| BsnI | GGCC | 2 cut(s) | 321, 711 |
| Bsp119I | TTCGAA | 1 cut(s) | 736 |
| Bsp143I | GATC | 5 cut(s) | 178, 183, 225, 355, 691 |
| BspACI | CCGC | 4 cut(s) | 301, 340, 458, 643 |
| BspANI | GGCC | 2 cut(s) | 321, 711 |
| BspCNI | CTCAG | 2 cut(s) | 242, 280 |
| BspPI | GGATC | 3 cut(s) | 191, 363, 699 |
| BspT104I | TTCGAA | 1 cut(s) | 736 |
| BsrBI | CCGCTC | 1 cut(s) | 458 |
| BsrDI | GCAATG | 1 cut(s) | 112 |
| BsrI | ACTGG | 3 cut(s) | 133, 435, 729 |
| BssMI | GATC | 5 cut(s) | 178, 183, 225, 355, 691 |
| Bst4CI | ACNGT | 1 cut(s) | 34 |
| BstBI | TTCGAA | 1 cut(s) | 736 |
| BstC8I | GCNNGC | 1 cut(s) | 204 |
| BstDEI | CTNAG | 3 cut(s) | 229, 288, 495 |
| BstF5I | GGATG | 2 cut(s) | 69, 277 |
| BstHHI | GCGC | 1 cut(s) | 58 |
| BstKTI | GATC | 5 cut(s) | 181, 186, 228, 358, 694 |
| BstMBI | GATC | 5 cut(s) | 178, 183, 225, 355, 691 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 318 |
| BstV1I | GCAGC | 1 cut(s) | 583 |
| BstX2I | RGATCY | 1 cut(s) | 355 |
| BstYI | RGATCY | 1 cut(s) | 355 |
| BsuRI | GGCC | 2 cut(s) | 321, 711 |
| BtsCI | GGATG | 2 cut(s) | 69, 277 |
| BtsIMutI | CAGTG | 2 cut(s) | 237, 722 |
| Cac8I | GCNNGC | 1 cut(s) | 204 |
| CfoI | GCGC | 1 cut(s) | 58 |
| Cfr13I | GGNCC | 1 cut(s) | 709 |
| Csp6I | GTAC | 2 cut(s) | 492, 696 |
| CviAII | CATG | 3 cut(s) | 53, 578, 687 |
| CviQI | GTAC | 2 cut(s) | 492, 696 |
| DdeI | CTNAG | 3 cut(s) | 229, 288, 495 |
| DpnI | GATC | 5 cut(s) | 180, 185, 227, 357, 693 |
| DpnII | GATC | 5 cut(s) | 178, 183, 225, 355, 691 |
| DraIII | CACNNNGTG | 1 cut(s) | 94 |
| EaeI | YGGCCR | 1 cut(s) | 319 |
| FaeI | CATG | 3 cut(s) | 56, 581, 690 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 460, 492 |
| FaqI | GGGAC | 5 cut(s) | 43, 121, 168, 348, 602 |
| FatI | CATG | 3 cut(s) | 52, 577, 686 |
| Fnu4HI | GCNGC | 4 cut(s) | 341, 459, 597, 644 |
| FokI | GGATG | 2 cut(s) | 56, 284 |
| Fsp4HI | GCNGC | 4 cut(s) | 341, 459, 597, 644 |
| FspBI | CTAG | 3 cut(s) | 326, 444, 489 |
| GlaI | GCGC | 1 cut(s) | 57 |
| GluI | GCNGC | 4 cut(s) | 341, 459, 597, 644 |
| GsuI | CTGGAG | 2 cut(s) | 216, 426 |
| HaeIII | GGCC | 2 cut(s) | 321, 711 |
| HhaI | GCGC | 1 cut(s) | 58 |
| Hin1II | CATG | 3 cut(s) | 56, 581, 690 |
| Hin6I | GCGC | 1 cut(s) | 56 |
| HinP1I | GCGC | 1 cut(s) | 56 |
| HincII | GTYRAC | 1 cut(s) | 250 |
| HindII | GTYRAC | 1 cut(s) | 250 |
| HinfI | GANTC | 8 cut(s) | 37, 64, 156, 221, 281, 485, 581, 728 |
| HpaI | GTTAAC | 1 cut(s) | 250 |
| HphI | GGTGA | 1 cut(s) | 304 |
| Hpy166II | GTNNAC | 3 cut(s) | 88, 250, 474 |
| Hpy188I | TCNGA | 4 cut(s) | 42, 183, 289, 541 |
| Hpy188III | TCNNGA | 4 cut(s) | 10, 61, 73, 326 |
| Hpy8I | GTNNAC | 3 cut(s) | 88, 250, 474 |
| HpyAV | CCTTC | 5 cut(s) | 149, 271, 462, 595, 708 |
| HpyCH4III | ACNGT | 1 cut(s) | 34 |
| HpyCH4V | TGCA | 2 cut(s) | 117, 364 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 318 |
| HpyF3I | CTNAG | 3 cut(s) | 229, 288, 495 |
| Hsp92II | CATG | 3 cut(s) | 56, 581, 690 |
| HspAI | GCGC | 1 cut(s) | 56 |
| KspAI | GTTAAC | 1 cut(s) | 250 |
| Kzo9I | GATC | 5 cut(s) | 178, 183, 225, 355, 691 |
| LmnI | GCTCC | 2 cut(s) | 455, 480 |
| Lsp1109I | GCAGC | 1 cut(s) | 583 |
| MaeI | CTAG | 3 cut(s) | 326, 444, 489 |
| MalI | GATC | 5 cut(s) | 180, 185, 227, 357, 693 |
| MbiI | CCGCTC | 1 cut(s) | 458 |
| MboI | GATC | 5 cut(s) | 178, 183, 225, 355, 691 |
| MboII | GAAGA | 2 cut(s) | 572, 614 |
| MflI | RGATCY | 1 cut(s) | 355 |
| MlsI | TGGCCA | 1 cut(s) | 321 |
| MluCI | AATT | 4 cut(s) | 19, 173, 624, 673 |
| MluNI | TGGCCA | 1 cut(s) | 321 |
| MlyI | GAGTC | 3 cut(s) | 150, 215, 479 |
| MnlI | CCTC | 4 cut(s) | 191, 283, 458, 712 |
| Mox20I | TGGCCA | 1 cut(s) | 321 |
| MroXI | GAANNNNTTC | 1 cut(s) | 732 |
| MscI | TGGCCA | 1 cut(s) | 321 |
| MseI | TTAA | 3 cut(s) | 249, 660, 705 |
| Msp20I | TGGCCA | 1 cut(s) | 321 |
| MspA1I | CMGCKG | 1 cut(s) | 340 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 318 |
| NdeII | GATC | 5 cut(s) | 178, 183, 225, 355, 691 |
| NlaIII | CATG | 3 cut(s) | 56, 581, 690 |
| NspV | TTCGAA | 1 cut(s) | 736 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 46 |
| PdmI | GAANNNNTTC | 1 cut(s) | 732 |
| PfeI | GAWTC | 5 cut(s) | 37, 64, 281, 581, 728 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 626 |
| PkrI | GCNGC | 4 cut(s) | 342, 460, 598, 645 |
| PleI | GAGTC | 3 cut(s) | 150, 215, 479 |
| PpsI | GAGTC | 3 cut(s) | 150, 215, 479 |
| PspPI | GGNCC | 1 cut(s) | 709 |
| PsuI | RGATCY | 1 cut(s) | 355 |
| RsaI | GTAC | 2 cut(s) | 493, 697 |
| RsaNI | GTAC | 2 cut(s) | 492, 696 |
| SaqAI | TTAA | 3 cut(s) | 249, 660, 705 |
| SatI | GCNGC | 4 cut(s) | 341, 459, 597, 644 |
| Sau3AI | GATC | 5 cut(s) | 178, 183, 225, 355, 691 |
| Sau96I | GGNCC | 1 cut(s) | 709 |
| ScaI | AGTACT | 1 cut(s) | 493 |
| SchI | GAGTC | 3 cut(s) | 150, 215, 479 |
| SetI | ASST | 7 cut(s) | 196, 294, 473, 511, 598, 681, 704 |
| SfuI | TTCGAA | 1 cut(s) | 736 |
| SmlI | CTYRAG | 2 cut(s) | 59, 591 |
| SmoI | CTYRAG | 2 cut(s) | 59, 591 |
| Sse9I | AATT | 4 cut(s) | 19, 173, 624, 673 |
| SsiI | CCGC | 4 cut(s) | 301, 340, 458, 643 |
| SspMI | CTAG | 3 cut(s) | 326, 444, 489 |
| TaaI | ACNGT | 1 cut(s) | 34 |
| TaqI | TCGA | 3 cut(s) | 224, 426, 736 |
| TasI | AATT | 4 cut(s) | 19, 173, 624, 673 |
| TatI | WGTACW | 1 cut(s) | 491 |
| TauI | GCSGC | 3 cut(s) | 343, 461, 646 |
| TfiI | GAWTC | 5 cut(s) | 37, 64, 281, 581, 728 |
| Tru1I | TTAA | 3 cut(s) | 249, 660, 705 |
| Tru9I | TTAA | 3 cut(s) | 249, 660, 705 |
| TscAI | CASTG | 2 cut(s) | 237, 729 |
| TseI | GCWGC | 1 cut(s) | 596 |
| TspDTI | ATGAA | 2 cut(s) | 17, 594 |
| TspRI | CASTG | 2 cut(s) | 237, 729 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 626 |
| XapI | RAATTY | 1 cut(s) | 19 |
| XbaI | TCTAGA | 1 cut(s) | 325 |
| XmnI | GAANNNNTTC | 1 cut(s) | 732 |
| XspI | CTAG | 3 cut(s) | 326, 444, 489 |
| ZrmI | AGTACT | 1 cut(s) | 493 |