ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 369 |
| AccIII | TCCGGA | 1 cut(s) | 186 |
| AciI | CCGC | 4 cut(s) | 5, 177, 367, 466 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 227, 228 |
| AgsI | TTSAA | 3 cut(s) | 386, 395, 488 |
| AhlI | ACTAGT | 1 cut(s) | 350 |
| AjnI | CCWGG | 1 cut(s) | 452 |
| Alw26I | GTCTC | 5 cut(s) | 57, 68, 112, 184, 368 |
| Ama87I | CYCGRG | 1 cut(s) | 123 |
| Aor13HI | TCCGGA | 1 cut(s) | 186 |
| AoxI | GGCC | 1 cut(s) | 355 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 491, 523 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 390 |
| AspS9I | GGNCC | 2 cut(s) | 184, 356 |
| AsuHPI | GGTGA | 2 cut(s) | 58, 251 |
| AvaI | CYCGRG | 1 cut(s) | 123 |
| AvaII | GGWCC | 1 cut(s) | 184 |
| BanII | GRGCYC | 2 cut(s) | 130, 234 |
| BauI | CACGAG | 1 cut(s) | 90 |
| BbsI | GAAGAC | 1 cut(s) | 266 |
| BccI | CCATC | 2 cut(s) | 31, 166 |
| BceAI | ACGGC | 1 cut(s) | 97 |
| BciT130I | CCWGG | 1 cut(s) | 454 |
| BcoDI | GTCTC | 5 cut(s) | 57, 68, 112, 184, 368 |
| BcuI | ACTAGT | 1 cut(s) | 350 |
| BfaI | CTAG | 3 cut(s) | 150, 327, 351 |
| BisI | GCNGC | 2 cut(s) | 5, 178 |
| BlsI | GCNGC | 2 cut(s) | 6, 179 |
| Bme1390I | CCNGG | 1 cut(s) | 454 |
| Bme18I | GGWCC | 1 cut(s) | 184 |
| BmeT110I | CYCGRG | 1 cut(s) | 123 |
| BmgT120I | GGNCC | 2 cut(s) | 184, 356 |
| BmrFI | CCNGG | 1 cut(s) | 454 |
| BmsI | GCATC | 1 cut(s) | 298 |
| BpiI | GAAGAC | 1 cut(s) | 266 |
| BsaI | GGTCTC | 1 cut(s) | 57 |
| BsaJI | CCNNGG | 1 cut(s) | 522 |
| BsaWI | WCCGGW | 1 cut(s) | 186 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 181, 211 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 227, 228 |
| Bse1I | ACTGG | 2 cut(s) | 103, 268 |
| BseAI | TCCGGA | 1 cut(s) | 186 |
| BseBI | CCWGG | 1 cut(s) | 454 |
| BseDI | CCNNGG | 1 cut(s) | 522 |
| BseGI | GGATG | 3 cut(s) | 15, 177, 287 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 227, 228 |
| BseNI | ACTGG | 2 cut(s) | 103, 268 |
| BshFI | GGCC | 1 cut(s) | 357 |
| BsiHKCI | CYCGRG | 1 cut(s) | 123 |
| BsiSI | CCGG | 1 cut(s) | 187 |
| BslFI | GGGAC | 1 cut(s) | 312 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 227, 228 |
| BsmAI | GTCTC | 5 cut(s) | 57, 68, 112, 184, 368 |
| BsmBI | CGTCTC | 2 cut(s) | 68, 368 |
| BsmFI | GGGAC | 1 cut(s) | 312 |
| BsnI | GGCC | 1 cut(s) | 357 |
| Bso31I | GGTCTC | 1 cut(s) | 57 |
| BsoBI | CYCGRG | 1 cut(s) | 123 |
| Bsp1286I | GDGCHC | 2 cut(s) | 130, 234 |
| Bsp13I | TCCGGA | 1 cut(s) | 186 |
| Bsp143I | GATC | 1 cut(s) | 241 |
| BspACI | CCGC | 4 cut(s) | 5, 177, 367, 466 |
| BspANI | GGCC | 1 cut(s) | 357 |
| BspEI | TCCGGA | 1 cut(s) | 186 |
| BspTNI | GGTCTC | 1 cut(s) | 57 |
| BsrBI | CCGCTC | 1 cut(s) | 369 |
| BsrI | ACTGG | 2 cut(s) | 103, 268 |
| BssECI | CCNNGG | 1 cut(s) | 522 |
| BssMI | GATC | 1 cut(s) | 241 |
| BssSI | CACGAG | 1 cut(s) | 90 |
| BssT1I | CCWWGG | 1 cut(s) | 522 |
| Bst2BI | CACGAG | 1 cut(s) | 90 |
| Bst2UI | CCWGG | 1 cut(s) | 454 |
| Bst6I | CTCTTC | 2 cut(s) | 115, 298 |
| BstC8I | GCNNGC | 1 cut(s) | 86 |
| BstEII | GGTNACC | 1 cut(s) | 316 |
| BstF5I | GGATG | 3 cut(s) | 15, 177, 287 |
| BstKTI | GATC | 1 cut(s) | 244 |
| BstMAI | GTCTC | 5 cut(s) | 57, 68, 112, 184, 368 |
| BstMBI | GATC | 1 cut(s) | 241 |
| BstNI | CCWGG | 1 cut(s) | 454 |
| BstPI | GGTNACC | 1 cut(s) | 316 |
| BstSCI | CCNGG | 1 cut(s) | 452 |
| BstV2I | GAAGAC | 1 cut(s) | 266 |
| BsuRI | GGCC | 1 cut(s) | 357 |
| BtsCI | GGATG | 3 cut(s) | 15, 177, 287 |
| Cac8I | GCNNGC | 1 cut(s) | 86 |
| Cfr13I | GGNCC | 2 cut(s) | 184, 356 |
| CviJI | RGCY | 9 cut(s) | 22, 84, 128, 153, 180, 232, 357, 507, 521 |
| CviKI_1 | RGCY | 9 cut(s) | 22, 84, 128, 153, 180, 232, 357, 507, 521 |
| DpnI | GATC | 1 cut(s) | 243 |
| DpnII | GATC | 1 cut(s) | 241 |
| Eam1104I | CTCTTC | 2 cut(s) | 115, 298 |
| EarI | CTCTTC | 2 cut(s) | 115, 298 |
| Eco130I | CCWWGG | 1 cut(s) | 522 |
| Eco24I | GRGCYC | 2 cut(s) | 130, 234 |
| Eco31I | GGTCTC | 1 cut(s) | 57 |
| Eco47I | GGWCC | 1 cut(s) | 184 |
| Eco88I | CYCGRG | 1 cut(s) | 123 |
| Eco91I | GGTNACC | 1 cut(s) | 316 |
| EcoO65I | GGTNACC | 1 cut(s) | 316 |
| EcoRII | CCWGG | 1 cut(s) | 452 |
| EcoT14I | CCWWGG | 1 cut(s) | 522 |
| EcoT38I | GRGCYC | 2 cut(s) | 130, 234 |
| ErhI | CCWWGG | 1 cut(s) | 522 |
| Esp3I | CGTCTC | 2 cut(s) | 68, 368 |
| FaiI | YATR | 2 cut(s) | 303, 376 |
| FaqI | GGGAC | 1 cut(s) | 312 |
| Fnu4HI | GCNGC | 2 cut(s) | 5, 178 |
| FokI | GGATG | 3 cut(s) | 2, 184, 274 |
| FriOI | GRGCYC | 2 cut(s) | 130, 234 |
| Fsp4HI | GCNGC | 2 cut(s) | 5, 178 |
| FspBI | CTAG | 3 cut(s) | 150, 327, 351 |
| GluI | GCNGC | 2 cut(s) | 5, 178 |
| HaeIII | GGCC | 1 cut(s) | 357 |
| HapII | CCGG | 1 cut(s) | 187 |
| HinfI | GANTC | 1 cut(s) | 207 |
| HpaII | CCGG | 1 cut(s) | 187 |
| HphI | GGTGA | 2 cut(s) | 58, 251 |
| Hpy166II | GTNNAC | 1 cut(s) | 269 |
| Hpy188I | TCNGA | 1 cut(s) | 258 |
| Hpy188III | TCNNGA | 3 cut(s) | 44, 187, 297 |
| Hpy8I | GTNNAC | 1 cut(s) | 269 |
| Hpy99I | CGWCG | 2 cut(s) | 60, 63 |
| HpyAV | CCTTC | 4 cut(s) | 44, 79, 124, 221 |
| HpyCH4V | TGCA | 1 cut(s) | 493 |
| Kpn2I | TCCGGA | 1 cut(s) | 186 |
| Kzo9I | GATC | 1 cut(s) | 241 |
| LpnPI | CCDG | 9 cut(s) | 32, 57, 84, 200, 222, 249, 257, 439, 466 |
| LweI | GCATC | 1 cut(s) | 298 |
| MaeI | CTAG | 3 cut(s) | 150, 327, 351 |
| MaeIII | GTNAC | 4 cut(s) | 9, 94, 316, 337 |
| MalI | GATC | 1 cut(s) | 243 |
| MbiI | CCGCTC | 1 cut(s) | 369 |
| MboI | GATC | 1 cut(s) | 241 |
| MboII | GAAGA | 5 cut(s) | 102, 245, 271, 285, 398 |
| MhlI | GDGCHC | 2 cut(s) | 130, 234 |
| MluCI | AATT | 5 cut(s) | 345, 381, 402, 494, 514 |
| MlyI | GAGTC | 1 cut(s) | 216 |
| MnlI | CCTC | 5 cut(s) | 87, 221, 301, 369, 497 |
| MroI | TCCGGA | 1 cut(s) | 186 |
| MroXI | GAANNNNTTC | 1 cut(s) | 390 |
| MslI | CAYNNNNRTG | 1 cut(s) | 306 |
| MspI | CCGG | 1 cut(s) | 187 |
| MspR9I | CCNGG | 1 cut(s) | 454 |
| MvaI | CCWGG | 1 cut(s) | 454 |
| NdeII | GATC | 1 cut(s) | 241 |
| NmuCI | GTSAC | 2 cut(s) | 9, 94 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 130 |
| PdmI | GAANNNNTTC | 1 cut(s) | 390 |
| PkrI | GCNGC | 2 cut(s) | 6, 179 |
| PleI | GAGTC | 1 cut(s) | 215 |
| PpsI | GAGTC | 1 cut(s) | 215 |
| Psp6I | CCWGG | 1 cut(s) | 452 |
| PspEI | GGTNACC | 1 cut(s) | 316 |
| PspGI | CCWGG | 1 cut(s) | 452 |
| PspPI | GGNCC | 2 cut(s) | 184, 356 |
| RseI | CAYNNNNRTG | 1 cut(s) | 306 |
| SatI | GCNGC | 2 cut(s) | 5, 178 |
| Sau3AI | GATC | 1 cut(s) | 241 |
| Sau96I | GGNCC | 2 cut(s) | 184, 356 |
| SchI | GAGTC | 1 cut(s) | 216 |
| ScrFI | CCNGG | 1 cut(s) | 454 |
| SduI | GDGCHC | 2 cut(s) | 130, 234 |
| SetI | ASST | 5 cut(s) | 53, 71, 276, 323, 455 |
| SfaNI | GCATC | 1 cut(s) | 298 |
| SinI | GGWCC | 1 cut(s) | 184 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 306 |
| SpeI | ACTAGT | 1 cut(s) | 350 |
| Sse9I | AATT | 5 cut(s) | 345, 381, 402, 494, 514 |
| SsiI | CCGC | 4 cut(s) | 5, 177, 367, 466 |
| SspMI | CTAG | 3 cut(s) | 150, 327, 351 |
| StyD4I | CCNGG | 1 cut(s) | 452 |
| StyI | CCWWGG | 1 cut(s) | 522 |
| TaqI | TCGA | 1 cut(s) | 343 |
| TasI | AATT | 5 cut(s) | 345, 381, 402, 494, 514 |
| TauI | GCSGC | 2 cut(s) | 7, 180 |
| TseFI | GTSAC | 2 cut(s) | 9, 94 |
| Tsp45I | GTSAC | 2 cut(s) | 9, 94 |
| TspDTI | ATGAA | 1 cut(s) | 155 |
| VpaK11BI | GGWCC | 1 cut(s) | 184 |
| XmnI | GAANNNNTTC | 1 cut(s) | 390 |
| XspI | CTAG | 3 cut(s) | 150, 327, 351 |