Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 874 |
| AccBSI | CCGCTC | 1 cut(s) | 259 |
| AccI | GTMKAC | 1 cut(s) | 629 |
| AccII | CGCG | 1 cut(s) | 49 |
| AciI | CCGC | 9 cut(s) | 44, 172, 207, 223, 259, 467, 602, 854, 872 |
| AclWI | GGATC | 5 cut(s) | 66, 131, 205, 487, 612 |
| AfaI | GTAC | 1 cut(s) | 679 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 82, 817 |
| AgeI | ACCGGT | 1 cut(s) | 781 |
| AgsI | TTSAA | 2 cut(s) | 427, 449 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 331 |
| AjiI | CACGTC | 1 cut(s) | 472 |
| AleI | CACNNNNGTG | 1 cut(s) | 150 |
| AluBI | AGCT | 5 cut(s) | 106, 126, 299, 552, 581 |
| AluI | AGCT | 5 cut(s) | 106, 126, 299, 552, 581 |
| Alw21I | GWGCWC | 2 cut(s) | 278, 833 |
| Alw26I | GTCTC | 1 cut(s) | 176 |
| AlwI | GGATC | 5 cut(s) | 66, 131, 205, 487, 612 |
| Ama87I | CYCGRG | 2 cut(s) | 265, 709 |
| AoxI | GGCC | 1 cut(s) | 292 |
| ApeKI | GCWGC | 3 cut(s) | 299, 311, 614 |
| AsiGI | ACCGGT | 1 cut(s) | 781 |
| AspLEI | GCGC | 1 cut(s) | 49 |
| AspS9I | GGNCC | 2 cut(s) | 284, 292 |
| AsuHPI | GGTGA | 1 cut(s) | 146 |
| AvaI | CYCGRG | 2 cut(s) | 265, 709 |
| AvaII | GGWCC | 1 cut(s) | 284 |
| BanI | GGYRCC | 1 cut(s) | 874 |
| BanII | GRGCYC | 1 cut(s) | 266 |
| BbsI | GAAGAC | 2 cut(s) | 492, 808 |
| Bbv12I | GWGCWC | 2 cut(s) | 278, 833 |
| BbvI | GCAGC | 3 cut(s) | 286, 298, 601 |
| BccI | CCATC | 3 cut(s) | 195, 211, 556 |
| BclI | TGATCA | 1 cut(s) | 790 |
| BcoDI | GTCTC | 1 cut(s) | 176 |
| BfaI | CTAG | 5 cut(s) | 11, 599, 608, 662, 761 |
| BfmI | CTRYAG | 2 cut(s) | 312, 615 |
| BglII | AGATCT | 1 cut(s) | 7 |
| BisI | GCNGC | 6 cut(s) | 45, 208, 224, 300, 312, 615 |
| BlsI | GCNGC | 6 cut(s) | 46, 209, 225, 301, 313, 616 |
| BmcAI | AGTACT | 1 cut(s) | 679 |
| Bme18I | GGWCC | 1 cut(s) | 284 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 331 |
| BmeT110I | CYCGRG | 2 cut(s) | 265, 709 |
| BmgBI | CACGTC | 1 cut(s) | 472 |
| BmgT120I | GGNCC | 2 cut(s) | 284, 292 |
| BmiI | GGNNCC | 2 cut(s) | 286, 876 |
| BmsI | GCATC | 4 cut(s) | 194, 257, 454, 631 |
| BpiI | GAAGAC | 2 cut(s) | 492, 808 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 248, 280, 628, 660 |
| BpmI | CTGGAG | 1 cut(s) | 128 |
| BpuEI | CTTGAG | 1 cut(s) | 819 |
| BsaI | GGTCTC | 1 cut(s) | 176 |
| BsaJI | CCNNGG | 2 cut(s) | 140, 288 |
| BsaWI | WCCGGW | 1 cut(s) | 781 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 101, 131, 532, 562 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 82, 817 |
| Bse118I | RCCGGY | 1 cut(s) | 781 |
| BseDI | CCNNGG | 2 cut(s) | 140, 288 |
| BseGI | GGATG | 4 cut(s) | 168, 209, 489, 727 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 82, 817 |
| BseMII | CTCAG | 3 cut(s) | 42, 76, 246 |
| BseRI | GAGGAG | 1 cut(s) | 29 |
| BseXI | GCAGC | 3 cut(s) | 286, 298, 601 |
| BseYI | CCCAGC | 1 cut(s) | 126 |
| BsgI | GTGCAG | 1 cut(s) | 285 |
| Bsh1236I | CGCG | 1 cut(s) | 49 |
| Bsh1285I | CGRYCG | 1 cut(s) | 53 |
| BshFI | GGCC | 1 cut(s) | 294 |
| BshNI | GGYRCC | 1 cut(s) | 874 |
| BshTI | ACCGGT | 1 cut(s) | 781 |
| BsiEI | CGRYCG | 1 cut(s) | 53 |
| BsiHKAI | GWGCWC | 2 cut(s) | 278, 833 |
| BsiHKCI | CYCGRG | 2 cut(s) | 265, 709 |
| BsiSI | CCGG | 2 cut(s) | 683, 782 |
| BslFI | GGGAC | 2 cut(s) | 188, 428 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 82, 817 |
| BsmAI | GTCTC | 1 cut(s) | 176 |
| BsmFI | GGGAC | 2 cut(s) | 188, 428 |
| BsnI | GGCC | 1 cut(s) | 294 |
| Bso31I | GGTCTC | 1 cut(s) | 176 |
| BsoBI | CYCGRG | 2 cut(s) | 265, 709 |
| Bsp1286I | GDGCHC | 3 cut(s) | 266, 278, 833 |
| Bsp19I | CCATGG | 1 cut(s) | 140 |
| BspACI | CCGC | 9 cut(s) | 44, 172, 207, 223, 259, 467, 602, 854, 872 |
| BspANI | GGCC | 1 cut(s) | 294 |
| BspCNI | CTCAG | 3 cut(s) | 41, 75, 247 |
| BspFNI | CGCG | 1 cut(s) | 49 |
| BspLI | GGNNCC | 2 cut(s) | 286, 876 |
| BspMAI | CTGCAG | 2 cut(s) | 316, 619 |
| BspPI | GGATC | 5 cut(s) | 66, 131, 205, 487, 612 |
| BspQI | GCTCTTC | 1 cut(s) | 411 |
| BspT107I | GGYRCC | 1 cut(s) | 874 |
| BspTNI | GGTCTC | 1 cut(s) | 176 |
| BsrBI | CCGCTC | 1 cut(s) | 259 |
| BsrFI | RCCGGY | 1 cut(s) | 781 |
| BssAI | RCCGGY | 1 cut(s) | 781 |
| BssECI | CCNNGG | 2 cut(s) | 140, 288 |
| BssNAI | GTATAC | 1 cut(s) | 630 |
| BssT1I | CCWWGG | 2 cut(s) | 140, 288 |
| Bst1107I | GTATAC | 1 cut(s) | 630 |
| Bst4CI | ACNGT | 1 cut(s) | 152 |
| Bst6I | CTCTTC | 1 cut(s) | 411 |
| BstC8I | GCNNGC | 3 cut(s) | 278, 316, 554 |
| BstDEI | CTNAG | 4 cut(s) | 28, 62, 255, 879 |
| BstDSI | CCRYGG | 1 cut(s) | 140 |
| BstF5I | GGATG | 4 cut(s) | 168, 209, 489, 727 |
| BstFNI | CGCG | 1 cut(s) | 49 |
| BstHHI | GCGC | 1 cut(s) | 49 |
| BstMAI | GTCTC | 1 cut(s) | 176 |
| BstMCI | CGRYCG | 1 cut(s) | 53 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 308 |
| BstSFI | CTRYAG | 2 cut(s) | 312, 615 |
| BstUI | CGCG | 1 cut(s) | 49 |
| BstV1I | GCAGC | 3 cut(s) | 286, 298, 601 |
| BstV2I | GAAGAC | 2 cut(s) | 492, 808 |
| BstX2I | RGATCY | 4 cut(s) | 7, 58, 197, 604 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 194 |
| BstYI | RGATCY | 4 cut(s) | 7, 58, 197, 604 |
| BstZ17I | GTATAC | 1 cut(s) | 630 |
| BsuRI | GGCC | 1 cut(s) | 294 |
| BtgI | CCRYGG | 1 cut(s) | 140 |
| BtrI | CACGTC | 1 cut(s) | 472 |
| BtsCI | GGATG | 4 cut(s) | 168, 209, 489, 727 |
| BtsIMutI | CAGTG | 2 cut(s) | 45, 157 |
| Cac8I | GCNNGC | 3 cut(s) | 278, 316, 554 |
| CfoI | GCGC | 1 cut(s) | 49 |
| Cfr10I | RCCGGY | 1 cut(s) | 781 |
| Cfr13I | GGNCC | 2 cut(s) | 284, 292 |
| CseI | GACGC | 2 cut(s) | 575, 647 |
| Csp6I | GTAC | 1 cut(s) | 678 |
| CspAI | ACCGGT | 1 cut(s) | 781 |
| CviAII | CATG | 4 cut(s) | 141, 319, 633, 746 |
| CviQI | GTAC | 1 cut(s) | 678 |
| DdeI | CTNAG | 4 cut(s) | 28, 62, 255, 879 |
| DriI | GACNNNNNGTC | 1 cut(s) | 331 |
| Eam1104I | CTCTTC | 1 cut(s) | 411 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 331 |
| EarI | CTCTTC | 1 cut(s) | 411 |
| Eco130I | CCWWGG | 2 cut(s) | 140, 288 |
| Eco24I | GRGCYC | 1 cut(s) | 266 |
| Eco31I | GGTCTC | 1 cut(s) | 176 |
| Eco47I | GGWCC | 1 cut(s) | 284 |
| Eco88I | CYCGRG | 2 cut(s) | 265, 709 |
| EcoT14I | CCWWGG | 2 cut(s) | 140, 288 |
| EcoT38I | GRGCYC | 1 cut(s) | 266 |
| ErhI | CCWWGG | 2 cut(s) | 140, 288 |
| FaeI | CATG | 4 cut(s) | 144, 322, 636, 749 |
| FaiI | YATR | 7 cut(s) | 142, 320, 516, 630, 634, 747, 795 |
| FaqI | GGGAC | 2 cut(s) | 188, 428 |
| FatI | CATG | 4 cut(s) | 140, 318, 632, 745 |
| FauI | CCCGC | 2 cut(s) | 165, 252 |
| FbaI | TGATCA | 1 cut(s) | 790 |
| FblI | GTMKAC | 1 cut(s) | 629 |
| Fnu4HI | GCNGC | 6 cut(s) | 45, 208, 224, 300, 312, 615 |
| FokI | GGATG | 4 cut(s) | 175, 216, 476, 714 |
| FriOI | GRGCYC | 1 cut(s) | 266 |
| Fsp4HI | GCNGC | 6 cut(s) | 45, 208, 224, 300, 312, 615 |
| FspBI | CTAG | 5 cut(s) | 11, 599, 608, 662, 761 |
| GlaI | GCGC | 1 cut(s) | 48 |
| GluI | GCNGC | 6 cut(s) | 45, 208, 224, 300, 312, 615 |
| GsaI | CCCAGC | 1 cut(s) | 130 |
| GsuI | CTGGAG | 1 cut(s) | 128 |
| HaeIII | GGCC | 1 cut(s) | 294 |
| HapII | CCGG | 2 cut(s) | 683, 782 |
| HgaI | GACGC | 2 cut(s) | 575, 647 |
| HhaI | GCGC | 1 cut(s) | 49 |
| Hin1II | CATG | 4 cut(s) | 144, 322, 636, 749 |
| Hin6I | GCGC | 1 cut(s) | 47 |
| HinP1I | GCGC | 1 cut(s) | 47 |
| HincII | GTYRAC | 1 cut(s) | 721 |
| HindII | GTYRAC | 1 cut(s) | 721 |
| HindIII | AAGCTT | 1 cut(s) | 579 |
| HinfI | GANTC | 4 cut(s) | 419, 544, 807, 839 |
| HpaII | CCGG | 2 cut(s) | 683, 782 |
| HphI | GGTGA | 1 cut(s) | 146 |
| Hpy166II | GTNNAC | 3 cut(s) | 325, 630, 721 |
| Hpy188I | TCNGA | 5 cut(s) | 103, 192, 484, 742, 770 |
| Hpy188III | TCNNGA | 7 cut(s) | 11, 201, 662, 709, 711, 761, 836 |
| Hpy8I | GTNNAC | 3 cut(s) | 325, 630, 721 |
| HpyAV | CCTTC | 3 cut(s) | 106, 153, 421 |
| HpyCH4III | ACNGT | 1 cut(s) | 152 |
| HpyCH4IV | ACGT | 1 cut(s) | 471 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 248, 302, 314, 556, 617 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 308 |
| HpyF3I | CTNAG | 4 cut(s) | 28, 62, 255, 879 |
| HpySE526I | ACGT | 1 cut(s) | 471 |
| Hsp92II | CATG | 4 cut(s) | 144, 322, 636, 749 |
| HspAI | GCGC | 1 cut(s) | 47 |
| Ksp22I | TGATCA | 1 cut(s) | 790 |
| LguI | GCTCTTC | 1 cut(s) | 411 |
| LmnI | GCTCC | 1 cut(s) | 655 |
| Lsp1109I | GCAGC | 3 cut(s) | 286, 298, 601 |
| LweI | GCATC | 4 cut(s) | 194, 257, 454, 631 |
| MaeI | CTAG | 5 cut(s) | 11, 599, 608, 662, 761 |
| MaeII | ACGT | 1 cut(s) | 471 |
| MaeIII | GTNAC | 2 cut(s) | 472, 593 |
| MbiI | CCGCTC | 1 cut(s) | 259 |
| MboII | GAAGA | 4 cut(s) | 398, 497, 749, 813 |
| MflI | RGATCY | 4 cut(s) | 7, 58, 197, 604 |
| MhlI | GDGCHC | 3 cut(s) | 266, 278, 833 |
| MluCI | AATT | 1 cut(s) | 363 |
| MlyI | GAGTC | 2 cut(s) | 413, 801 |
| MmeI | TCCRAC | 1 cut(s) | 47 |
| MnlI | CCTC | 6 cut(s) | 7, 27, 301, 389, 534, 811 |
| MseI | TTAA | 1 cut(s) | 786 |
| MslI | CAYNNNNRTG | 2 cut(s) | 150, 192 |
| MspI | CCGG | 2 cut(s) | 683, 782 |
| MvnI | CGCG | 1 cut(s) | 49 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 308 |
| NcoI | CCATGG | 1 cut(s) | 140 |
| NlaIII | CATG | 4 cut(s) | 144, 322, 636, 749 |
| NlaIV | GGNNCC | 2 cut(s) | 286, 876 |
| NmeAIII | GCCGAG | 1 cut(s) | 320 |
| NmuCI | GTSAC | 1 cut(s) | 472 |
| OliI | CACNNNNGTG | 1 cut(s) | 150 |
| PaeR7I | CTCGAG | 1 cut(s) | 709 |
| PciSI | GCTCTTC | 1 cut(s) | 411 |
| PfeI | GAWTC | 2 cut(s) | 544, 839 |
| PinAI | ACCGGT | 1 cut(s) | 781 |
| PkrI | GCNGC | 6 cut(s) | 46, 209, 225, 301, 313, 616 |
| Ple19I | CGATCG | 1 cut(s) | 53 |
| PleI | GAGTC | 2 cut(s) | 413, 801 |
| PpsI | GAGTC | 2 cut(s) | 413, 801 |
| PspFI | CCCAGC | 1 cut(s) | 126 |
| PspN4I | GGNNCC | 2 cut(s) | 286, 876 |
| PspPI | GGNCC | 2 cut(s) | 284, 292 |
| PstI | CTGCAG | 2 cut(s) | 316, 619 |
| PsuI | RGATCY | 4 cut(s) | 7, 58, 197, 604 |
| PvuI | CGATCG | 1 cut(s) | 53 |
| RsaI | GTAC | 1 cut(s) | 679 |
| RsaNI | GTAC | 1 cut(s) | 678 |
| RseI | CAYNNNNRTG | 2 cut(s) | 150, 192 |
| SapI | GCTCTTC | 1 cut(s) | 411 |
| SaqAI | TTAA | 1 cut(s) | 786 |
| SatI | GCNGC | 6 cut(s) | 45, 208, 224, 300, 312, 615 |
| Sau96I | GGNCC | 2 cut(s) | 284, 292 |
| ScaI | AGTACT | 1 cut(s) | 679 |
| SchI | GAGTC | 2 cut(s) | 413, 801 |
| SduI | GDGCHC | 3 cut(s) | 266, 278, 833 |
| SfaNI | GCATC | 4 cut(s) | 194, 257, 454, 631 |
| SfcI | CTRYAG | 2 cut(s) | 312, 615 |
| Sfr274I | CTCGAG | 1 cut(s) | 709 |
| SinI | GGWCC | 1 cut(s) | 284 |
| SlaI | CTCGAG | 1 cut(s) | 709 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 150, 192 |
| SmlI | CTYRAG | 2 cut(s) | 709, 834 |
| SmoI | CTYRAG | 2 cut(s) | 709, 834 |
| Sse9I | AATT | 1 cut(s) | 363 |
| SsiI | CCGC | 9 cut(s) | 44, 172, 207, 223, 259, 467, 602, 854, 872 |
| SspMI | CTAG | 5 cut(s) | 11, 599, 608, 662, 761 |
| StyI | CCWWGG | 2 cut(s) | 140, 288 |
| TaaI | ACNGT | 1 cut(s) | 152 |
| TaiI | ACGT | 1 cut(s) | 474 |
| TaqI | TCGA | 2 cut(s) | 251, 710 |
| TasI | AATT | 1 cut(s) | 363 |
| TatI | WGTACW | 1 cut(s) | 677 |
| TauI | GCSGC | 3 cut(s) | 47, 210, 226 |
| TfiI | GAWTC | 2 cut(s) | 544, 839 |
| Tru1I | TTAA | 1 cut(s) | 786 |
| Tru9I | TTAA | 1 cut(s) | 786 |
| TscAI | CASTG | 2 cut(s) | 45, 157 |
| TseFI | GTSAC | 1 cut(s) | 472 |
| TseI | GCWGC | 3 cut(s) | 299, 311, 614 |
| Tsp45I | GTSAC | 1 cut(s) | 472 |
| TspDTI | ATGAA | 2 cut(s) | 182, 448 |
| TspGWI | ACGGA | 2 cut(s) | 424, 800 |
| TspRI | CASTG | 2 cut(s) | 45, 157 |
| VpaK11BI | GGWCC | 1 cut(s) | 284 |
| XbaI | TCTAGA | 3 cut(s) | 10, 661, 760 |
| XhoI | CTCGAG | 1 cut(s) | 709 |
| XmiI | GTMKAC | 1 cut(s) | 629 |
| XspI | CTAG | 5 cut(s) | 11, 599, 608, 662, 761 |
| ZrmI | AGTACT | 1 cut(s) | 679 |