ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 719 |
| AccBSI | CCGCTC | 1 cut(s) | 161 |
| AccII | CGCG | 1 cut(s) | 448 |
| AciI | CCGC | 4 cut(s) | 161, 231, 448, 661 |
| AclWI | GGATC | 1 cut(s) | 504 |
| AcsI | RAATTY | 1 cut(s) | 697 |
| AcyI | GRCGYC | 1 cut(s) | 655 |
| AfaI | GTAC | 2 cut(s) | 196, 502 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 281 |
| AflII | CTTAAG | 1 cut(s) | 680 |
| AgsI | TTSAA | 4 cut(s) | 52, 365, 434, 511 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 163, 195, 470, 502 |
| AluBI | AGCT | 3 cut(s) | 572, 593, 797 |
| AluI | AGCT | 3 cut(s) | 572, 593, 797 |
| Alw26I | GTCTC | 2 cut(s) | 21, 638 |
| AlwI | GGATC | 1 cut(s) | 504 |
| Ama87I | CYCGRG | 1 cut(s) | 256 |
| ApeKI | GCWGC | 1 cut(s) | 562 |
| ApoI | RAATTY | 1 cut(s) | 697 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 537 |
| AspLEI | GCGC | 1 cut(s) | 448 |
| AspS9I | GGNCC | 1 cut(s) | 786 |
| AsuC2I | CCSGG | 2 cut(s) | 341, 581 |
| AsuII | TTCGAA | 1 cut(s) | 541 |
| AvaI | CYCGRG | 1 cut(s) | 256 |
| AvaII | GGWCC | 1 cut(s) | 786 |
| BanI | GGYRCC | 1 cut(s) | 719 |
| BbsI | GAAGAC | 1 cut(s) | 591 |
| BbvI | GCAGC | 1 cut(s) | 549 |
| BccI | CCATC | 1 cut(s) | 720 |
| BceAI | ACGGC | 1 cut(s) | 333 |
| BcnI | CCSGG | 2 cut(s) | 341, 581 |
| BcoDI | GTCTC | 2 cut(s) | 21, 638 |
| BfaI | CTAG | 4 cut(s) | 192, 279, 834, 888 |
| BfmI | CTRYAG | 2 cut(s) | 517, 563 |
| BfrI | CTTAAG | 1 cut(s) | 680 |
| BisI | GCNGC | 3 cut(s) | 162, 449, 563 |
| BlsI | GCNGC | 3 cut(s) | 163, 450, 564 |
| Bme1390I | CCNGG | 2 cut(s) | 341, 581 |
| Bme18I | GGWCC | 1 cut(s) | 786 |
| BmeT110I | CYCGRG | 1 cut(s) | 256 |
| BmgT120I | GGNCC | 1 cut(s) | 786 |
| BmiI | GGNNCC | 3 cut(s) | 721, 787, 788 |
| BmrFI | CCNGG | 2 cut(s) | 341, 581 |
| BpiI | GAAGAC | 1 cut(s) | 591 |
| BpmI | CTGGAG | 1 cut(s) | 587 |
| Bpu14I | TTCGAA | 1 cut(s) | 541 |
| BpuEI | CTTGAG | 3 cut(s) | 381, 843, 872 |
| BpuMI | CCSGG | 2 cut(s) | 341, 581 |
| BsaHI | GRCGYC | 1 cut(s) | 655 |
| BsaI | GGTCTC | 1 cut(s) | 638 |
| BsaJI | CCNNGG | 2 cut(s) | 198, 340 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 281 |
| Bse1I | ACTGG | 5 cut(s) | 88, 312, 330, 534, 604 |
| BseDI | CCNNGG | 2 cut(s) | 198, 340 |
| BseGI | GGATG | 1 cut(s) | 559 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 281 |
| BseNI | ACTGG | 5 cut(s) | 88, 312, 330, 534, 604 |
| BseRI | GAGGAG | 1 cut(s) | 818 |
| BseXI | GCAGC | 1 cut(s) | 549 |
| BseYI | CCCAGC | 1 cut(s) | 42 |
| Bsh1236I | CGCG | 1 cut(s) | 448 |
| Bsh1285I | CGRYCG | 1 cut(s) | 665 |
| BshNI | GGYRCC | 1 cut(s) | 719 |
| BsiEI | CGRYCG | 1 cut(s) | 665 |
| BsiHKCI | CYCGRG | 1 cut(s) | 256 |
| BsiSI | CCGG | 2 cut(s) | 340, 581 |
| BslFI | GGGAC | 2 cut(s) | 407, 772 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 281 |
| BsmAI | GTCTC | 2 cut(s) | 21, 638 |
| BsmFI | GGGAC | 2 cut(s) | 407, 772 |
| BsmI | GAATGC | 3 cut(s) | 96, 118, 549 |
| Bso31I | GGTCTC | 1 cut(s) | 638 |
| BsoBI | CYCGRG | 1 cut(s) | 256 |
| Bsp119I | TTCGAA | 1 cut(s) | 541 |
| Bsp143I | GATC | 3 cut(s) | 211, 289, 496 |
| BspACI | CCGC | 4 cut(s) | 161, 231, 448, 661 |
| BspFNI | CGCG | 1 cut(s) | 448 |
| BspLI | GGNNCC | 3 cut(s) | 721, 787, 788 |
| BspMAI | CTGCAG | 1 cut(s) | 567 |
| BspPI | GGATC | 1 cut(s) | 504 |
| BspT104I | TTCGAA | 1 cut(s) | 541 |
| BspT107I | GGYRCC | 1 cut(s) | 719 |
| BspTI | CTTAAG | 1 cut(s) | 680 |
| BspTNI | GGTCTC | 1 cut(s) | 638 |
| BsrBI | CCGCTC | 1 cut(s) | 161 |
| BsrI | ACTGG | 5 cut(s) | 88, 312, 330, 534, 604 |
| BssECI | CCNNGG | 2 cut(s) | 198, 340 |
| BssMI | GATC | 3 cut(s) | 211, 289, 496 |
| BssNI | GRCGYC | 1 cut(s) | 655 |
| BssT1I | CCWWGG | 1 cut(s) | 198 |
| BstACI | GRCGYC | 1 cut(s) | 655 |
| BstAFI | CTTAAG | 1 cut(s) | 680 |
| BstBI | TTCGAA | 1 cut(s) | 541 |
| BstF5I | GGATG | 1 cut(s) | 559 |
| BstFNI | CGCG | 1 cut(s) | 448 |
| BstHHI | GCGC | 1 cut(s) | 448 |
| BstKTI | GATC | 3 cut(s) | 214, 292, 499 |
| BstMAI | GTCTC | 2 cut(s) | 21, 638 |
| BstMBI | GATC | 3 cut(s) | 211, 289, 496 |
| BstMCI | CGRYCG | 1 cut(s) | 665 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 345 |
| BstSCI | CCNGG | 2 cut(s) | 339, 579 |
| BstSFI | CTRYAG | 2 cut(s) | 517, 563 |
| BstUI | CGCG | 1 cut(s) | 448 |
| BstV1I | GCAGC | 1 cut(s) | 549 |
| BstV2I | GAAGAC | 1 cut(s) | 591 |
| BtsCI | GGATG | 1 cut(s) | 559 |
| CfoI | GCGC | 1 cut(s) | 448 |
| Cfr13I | GGNCC | 1 cut(s) | 786 |
| CseI | GACGC | 1 cut(s) | 644 |
| Csp6I | GTAC | 2 cut(s) | 195, 501 |
| CviAII | CATG | 4 cut(s) | 215, 383, 414, 492 |
| CviQI | GTAC | 2 cut(s) | 195, 501 |
| DpnI | GATC | 3 cut(s) | 213, 291, 498 |
| DpnII | GATC | 3 cut(s) | 211, 289, 496 |
| DraI | TTTAAA | 1 cut(s) | 102 |
| Eco130I | CCWWGG | 1 cut(s) | 198 |
| Eco31I | GGTCTC | 1 cut(s) | 638 |
| Eco32I | GATATC | 1 cut(s) | 78 |
| Eco47I | GGWCC | 1 cut(s) | 786 |
| Eco88I | CYCGRG | 1 cut(s) | 256 |
| EcoO109I | RGGNCCY | 1 cut(s) | 786 |
| EcoRI | GAATTC | 1 cut(s) | 697 |
| EcoRV | GATATC | 1 cut(s) | 78 |
| EcoT14I | CCWWGG | 1 cut(s) | 198 |
| ErhI | CCWWGG | 1 cut(s) | 198 |
| FaeI | CATG | 4 cut(s) | 218, 386, 417, 495 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 163, 195 |
| FaqI | GGGAC | 2 cut(s) | 407, 772 |
| FatI | CATG | 4 cut(s) | 214, 382, 413, 491 |
| FauI | CCCGC | 1 cut(s) | 238 |
| Fnu4HI | GCNGC | 3 cut(s) | 162, 449, 563 |
| FokI | GGATG | 1 cut(s) | 566 |
| Fsp4HI | GCNGC | 3 cut(s) | 162, 449, 563 |
| FspBI | CTAG | 4 cut(s) | 192, 279, 834, 888 |
| GlaI | GCGC | 1 cut(s) | 447 |
| GluI | GCNGC | 3 cut(s) | 162, 449, 563 |
| GsaI | CCCAGC | 1 cut(s) | 46 |
| GsuI | CTGGAG | 1 cut(s) | 587 |
| HapII | CCGG | 2 cut(s) | 340, 581 |
| HgaI | GACGC | 1 cut(s) | 644 |
| HhaI | GCGC | 1 cut(s) | 448 |
| Hin1I | GRCGYC | 1 cut(s) | 655 |
| Hin1II | CATG | 4 cut(s) | 218, 386, 417, 495 |
| Hin6I | GCGC | 1 cut(s) | 446 |
| HinP1I | GCGC | 1 cut(s) | 446 |
| HindIII | AAGCTT | 1 cut(s) | 570 |
| HinfI | GANTC | 2 cut(s) | 386, 533 |
| HpaII | CCGG | 2 cut(s) | 340, 581 |
| Hpy166II | GTNNAC | 1 cut(s) | 177 |
| Hpy188I | TCNGA | 3 cut(s) | 244, 289, 621 |
| Hpy188III | TCNNGA | 3 cut(s) | 258, 851, 860 |
| Hpy8I | GTNNAC | 1 cut(s) | 177 |
| HpyAV | CCTTC | 6 cut(s) | 161, 165, 400, 517, 680, 892 |
| HpyCH4IV | ACGT | 1 cut(s) | 616 |
| HpyCH4V | TGCA | 6 cut(s) | 141, 318, 456, 547, 565, 874 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 345 |
| HpySE526I | ACGT | 1 cut(s) | 616 |
| Hsp92I | GRCGYC | 1 cut(s) | 655 |
| Hsp92II | CATG | 4 cut(s) | 218, 386, 417, 495 |
| HspAI | GCGC | 1 cut(s) | 446 |
| KflI | GGGWCCC | 1 cut(s) | 786 |
| Kzo9I | GATC | 3 cut(s) | 211, 289, 496 |
| LmnI | GCTCC | 2 cut(s) | 158, 183 |
| Lsp1109I | GCAGC | 1 cut(s) | 549 |
| MaeI | CTAG | 4 cut(s) | 192, 279, 834, 888 |
| MaeII | ACGT | 1 cut(s) | 616 |
| MaeIII | GTNAC | 2 cut(s) | 251, 814 |
| MalI | GATC | 3 cut(s) | 213, 291, 498 |
| MbiI | CCGCTC | 1 cut(s) | 161 |
| MboI | GATC | 3 cut(s) | 211, 289, 496 |
| MboII | GAAGA | 4 cut(s) | 377, 419, 596, 751 |
| MfeI | CAATTG | 1 cut(s) | 441 |
| MmeI | TCCRAC | 1 cut(s) | 531 |
| MnlI | CCTC | 7 cut(s) | 285, 517, 660, 733, 796, 799, 867 |
| MroXI | GAANNNNTTC | 1 cut(s) | 537 |
| MseI | TTAA | 6 cut(s) | 101, 333, 357, 465, 681, 750 |
| MslI | CAYNNNNRTG | 1 cut(s) | 717 |
| MspA1I | CMGCKG | 1 cut(s) | 661 |
| MspCI | CTTAAG | 1 cut(s) | 680 |
| MspI | CCGG | 2 cut(s) | 340, 581 |
| MspR9I | CCNGG | 2 cut(s) | 341, 581 |
| MssI | GTTTAAAC | 1 cut(s) | 102 |
| MunI | CAATTG | 1 cut(s) | 441 |
| Mva1269I | GAATGC | 3 cut(s) | 96, 118, 549 |
| MvnI | CGCG | 1 cut(s) | 448 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 345 |
| NciI | CCSGG | 2 cut(s) | 341, 581 |
| NdeII | GATC | 3 cut(s) | 211, 289, 496 |
| NlaIII | CATG | 4 cut(s) | 218, 386, 417, 495 |
| NlaIV | GGNNCC | 3 cut(s) | 721, 787, 788 |
| NspV | TTCGAA | 1 cut(s) | 541 |
| PaeR7I | CTCGAG | 1 cut(s) | 256 |
| PctI | GAATGC | 3 cut(s) | 96, 118, 549 |
| PdmI | GAANNNNTTC | 1 cut(s) | 537 |
| PfeI | GAWTC | 2 cut(s) | 386, 533 |
| PkrI | GCNGC | 3 cut(s) | 163, 450, 564 |
| PmeI | GTTTAAAC | 1 cut(s) | 102 |
| PpuMI | RGGWCCY | 1 cut(s) | 786 |
| Psp5II | RGGWCCY | 1 cut(s) | 786 |
| PspFI | CCCAGC | 1 cut(s) | 42 |
| PspN4I | GGNNCC | 3 cut(s) | 721, 787, 788 |
| PspPI | GGNCC | 1 cut(s) | 786 |
| PspPPI | RGGWCCY | 1 cut(s) | 786 |
| PstI | CTGCAG | 1 cut(s) | 567 |
| RsaI | GTAC | 2 cut(s) | 196, 502 |
| RsaNI | GTAC | 2 cut(s) | 195, 501 |
| RseI | CAYNNNNRTG | 1 cut(s) | 717 |
| SaqAI | TTAA | 6 cut(s) | 101, 333, 357, 465, 681, 750 |
| SatI | GCNGC | 3 cut(s) | 162, 449, 563 |
| Sau3AI | GATC | 3 cut(s) | 211, 289, 496 |
| Sau96I | GGNCC | 1 cut(s) | 786 |
| ScrFI | CCNGG | 2 cut(s) | 341, 581 |
| SfcI | CTRYAG | 2 cut(s) | 517, 563 |
| Sfr274I | CTCGAG | 1 cut(s) | 256 |
| SfuI | TTCGAA | 1 cut(s) | 541 |
| SinI | GGWCC | 1 cut(s) | 786 |
| SlaI | CTCGAG | 1 cut(s) | 256 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 717 |
| SmlI | CTYRAG | 5 cut(s) | 256, 396, 680, 851, 858 |
| SmoI | CTYRAG | 5 cut(s) | 256, 396, 680, 851, 858 |
| SsiI | CCGC | 4 cut(s) | 161, 231, 448, 661 |
| SspMI | CTAG | 4 cut(s) | 192, 279, 834, 888 |
| StyD4I | CCNGG | 2 cut(s) | 339, 579 |
| StyI | CCWWGG | 1 cut(s) | 198 |
| TaiI | ACGT | 1 cut(s) | 619 |
| TaqI | TCGA | 4 cut(s) | 63, 257, 541, 665 |
| TauI | GCSGC | 2 cut(s) | 164, 451 |
| TfiI | GAWTC | 2 cut(s) | 386, 533 |
| Tru1I | TTAA | 6 cut(s) | 101, 333, 357, 465, 681, 750 |
| Tru9I | TTAA | 6 cut(s) | 101, 333, 357, 465, 681, 750 |
| TseI | GCWGC | 1 cut(s) | 562 |
| TspDTI | ATGAA | 3 cut(s) | 125, 399, 639 |
| Vha464I | CTTAAG | 1 cut(s) | 680 |
| VpaK11BI | GGWCC | 1 cut(s) | 786 |
| XapI | RAATTY | 1 cut(s) | 697 |
| XhoI | CTCGAG | 1 cut(s) | 256 |
| XmnI | GAANNNNTTC | 1 cut(s) | 537 |
| XspI | CTAG | 4 cut(s) | 192, 279, 834, 888 |