ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 707 |
| Acc36I | ACCTGC | 1 cut(s) | 1215 |
| AccI | GTMKAC | 1 cut(s) | 933 |
| AciI | CCGC | 2 cut(s) | 391, 986 |
| AclWI | GGATC | 5 cut(s) | 124, 493, 1026, 1195, 1261 |
| AcsI | RAATTY | 4 cut(s) | 507, 780, 920, 999 |
| AcuI | CTGAAG | 1 cut(s) | 443 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 836, 1041, 1276 |
| AflIII | ACRYGT | 3 cut(s) | 135, 221, 1138 |
| AgsI | TTSAA | 9 cut(s) | 20, 272, 436, 724, 836, 920, 998, 1103, 1216 |
| AluBI | AGCT | 2 cut(s) | 104, 1239 |
| AluI | AGCT | 2 cut(s) | 104, 1239 |
| Alw26I | GTCTC | 6 cut(s) | 29, 399, 533, 1039, 1163, 1237 |
| AlwI | GGATC | 5 cut(s) | 124, 493, 1026, 1195, 1261 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 119 |
| AoxI | GGCC | 4 cut(s) | 176, 556, 814, 1247 |
| ApaI | GGGCCC | 1 cut(s) | 560 |
| ApoI | RAATTY | 4 cut(s) | 507, 780, 920, 999 |
| AspLEI | GCGC | 2 cut(s) | 147, 670 |
| AspS9I | GGNCC | 5 cut(s) | 177, 302, 338, 556, 557 |
| AsuC2I | CCSGG | 1 cut(s) | 546 |
| AsuHPI | GGTGA | 3 cut(s) | 315, 454, 728 |
| AsuII | TTCGAA | 1 cut(s) | 1059 |
| AsuNHI | GCTAGC | 1 cut(s) | 100 |
| AvaII | GGWCC | 2 cut(s) | 302, 338 |
| AxyI | CCTNAGG | 2 cut(s) | 561, 573 |
| BaeGI | GKGCMC | 1 cut(s) | 560 |
| BanII | GRGCYC | 2 cut(s) | 417, 560 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 48, 80 |
| BbsI | GAAGAC | 2 cut(s) | 66, 363 |
| BccI | CCATC | 2 cut(s) | 188, 1015 |
| BceAI | ACGGC | 1 cut(s) | 1262 |
| BclI | TGATCA | 1 cut(s) | 976 |
| BcnI | CCSGG | 1 cut(s) | 546 |
| BcoDI | GTCTC | 6 cut(s) | 29, 399, 533, 1039, 1163, 1237 |
| BfaI | CTAG | 2 cut(s) | 101, 1297 |
| BfoI | RGCGCY | 1 cut(s) | 671 |
| BfuAI | ACCTGC | 1 cut(s) | 1215 |
| Bme1390I | CCNGG | 1 cut(s) | 546 |
| Bme18I | GGWCC | 2 cut(s) | 302, 338 |
| BmgT120I | GGNCC | 5 cut(s) | 177, 302, 338, 556, 557 |
| BmiI | GGNNCC | 2 cut(s) | 303, 558 |
| BmrFI | CCNGG | 1 cut(s) | 546 |
| BmsI | GCATC | 1 cut(s) | 1127 |
| BmtI | GCTAGC | 1 cut(s) | 104 |
| BpiI | GAAGAC | 2 cut(s) | 66, 363 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1160, 1192 |
| BpmI | CTGGAG | 1 cut(s) | 1261 |
| Bpu14I | TTCGAA | 1 cut(s) | 1059 |
| BpuMI | CCSGG | 1 cut(s) | 546 |
| BsaI | GGTCTC | 1 cut(s) | 399 |
| BsaJI | CCNNGG | 3 cut(s) | 68, 173, 349 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 836, 1041, 1276 |
| Bse1I | ACTGG | 2 cut(s) | 290, 707 |
| Bse21I | CCTNAGG | 2 cut(s) | 561, 573 |
| BseDI | CCNNGG | 3 cut(s) | 68, 173, 349 |
| BseGI | GGATG | 2 cut(s) | 490, 1026 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 836, 1041, 1276 |
| BseMII | CTCAG | 6 cut(s) | 122, 311, 527, 564, 575, 1158 |
| BseNI | ACTGG | 2 cut(s) | 290, 707 |
| BseRI | GAGGAG | 3 cut(s) | 617, 758, 1057 |
| BseSI | GKGCMC | 1 cut(s) | 560 |
| BsgI | GTGCAG | 1 cut(s) | 160 |
| Bsh1285I | CGRYCG | 1 cut(s) | 797 |
| BshFI | GGCC | 4 cut(s) | 178, 558, 816, 1249 |
| BsiEI | CGRYCG | 1 cut(s) | 797 |
| BsiSI | CCGG | 1 cut(s) | 545 |
| BslFI | GGGAC | 1 cut(s) | 32 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 836, 1041, 1276 |
| BsmAI | GTCTC | 6 cut(s) | 29, 399, 533, 1039, 1163, 1237 |
| BsmBI | CGTCTC | 2 cut(s) | 1039, 1237 |
| BsmFI | GGGAC | 1 cut(s) | 32 |
| BsnI | GGCC | 4 cut(s) | 178, 558, 816, 1249 |
| Bso31I | GGTCTC | 1 cut(s) | 399 |
| Bsp119I | TTCGAA | 1 cut(s) | 1059 |
| Bsp120I | GGGCCC | 1 cut(s) | 556 |
| Bsp1286I | GDGCHC | 2 cut(s) | 417, 560 |
| Bsp143I | GATC | 7 cut(s) | 116, 498, 794, 976, 1031, 1187, 1266 |
| BspACI | CCGC | 2 cut(s) | 391, 986 |
| BspANI | GGCC | 4 cut(s) | 178, 558, 816, 1249 |
| BspCNI | CTCAG | 6 cut(s) | 121, 310, 526, 565, 574, 1159 |
| BspLI | GGNNCC | 2 cut(s) | 303, 558 |
| BspMI | ACCTGC | 1 cut(s) | 1215 |
| BspOI | GCTAGC | 1 cut(s) | 104 |
| BspPI | GGATC | 5 cut(s) | 124, 493, 1026, 1195, 1261 |
| BspT104I | TTCGAA | 1 cut(s) | 1059 |
| BspTNI | GGTCTC | 1 cut(s) | 399 |
| BsrI | ACTGG | 2 cut(s) | 290, 707 |
| BssECI | CCNNGG | 3 cut(s) | 68, 173, 349 |
| BssMI | GATC | 7 cut(s) | 116, 498, 794, 976, 1031, 1187, 1266 |
| BssNAI | GTATAC | 1 cut(s) | 934 |
| BssT1I | CCWWGG | 2 cut(s) | 173, 349 |
| Bst1107I | GTATAC | 1 cut(s) | 934 |
| Bst4CI | ACNGT | 5 cut(s) | 55, 691, 789, 944, 1050 |
| Bst6I | CTCTTC | 2 cut(s) | 1034, 1056 |
| BstBI | TTCGAA | 1 cut(s) | 1059 |
| BstC8I | GCNNGC | 3 cut(s) | 102, 143, 170 |
| BstDEI | CTNAG | 7 cut(s) | 108, 297, 364, 513, 561, 573, 1167 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 834 |
| BstF5I | GGATG | 2 cut(s) | 490, 1026 |
| BstH2I | RGCGCY | 1 cut(s) | 671 |
| BstHHI | GCGC | 2 cut(s) | 147, 670 |
| BstKTI | GATC | 7 cut(s) | 119, 501, 797, 979, 1034, 1190, 1269 |
| BstMAI | GTCTC | 6 cut(s) | 29, 399, 533, 1039, 1163, 1237 |
| BstMBI | GATC | 7 cut(s) | 116, 498, 794, 976, 1031, 1187, 1266 |
| BstMCI | CGRYCG | 1 cut(s) | 797 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 555, 624 |
| BstNSI | RCATGY | 5 cut(s) | 139, 225, 553, 643, 1142 |
| BstSCI | CCNGG | 1 cut(s) | 544 |
| BstSLI | GKGCMC | 1 cut(s) | 560 |
| BstV2I | GAAGAC | 2 cut(s) | 66, 363 |
| BstX2I | RGATCY | 3 cut(s) | 116, 498, 1187 |
| BstYI | RGATCY | 3 cut(s) | 116, 498, 1187 |
| BstZ17I | GTATAC | 1 cut(s) | 934 |
| Bsu36I | CCTNAGG | 2 cut(s) | 561, 573 |
| BsuRI | GGCC | 4 cut(s) | 178, 558, 816, 1249 |
| BtgZI | GCGATG | 1 cut(s) | 329 |
| BtsCI | GGATG | 2 cut(s) | 490, 1026 |
| BtsI | GCAGTG | 1 cut(s) | 744 |
| BtsIMutI | CAGTG | 3 cut(s) | 77, 744, 940 |
| BveI | ACCTGC | 1 cut(s) | 1215 |
| Cac8I | GCNNGC | 3 cut(s) | 102, 143, 170 |
| CaiI | CAGNNNCTG | 1 cut(s) | 119 |
| CfoI | GCGC | 2 cut(s) | 147, 670 |
| Cfr13I | GGNCC | 5 cut(s) | 177, 302, 338, 556, 557 |
| CseI | GACGC | 1 cut(s) | 383 |
| CviAII | CATG | 8 cut(s) | 136, 222, 335, 503, 550, 640, 925, 1139 |
| DdeI | CTNAG | 7 cut(s) | 108, 297, 364, 513, 561, 573, 1167 |
| DpnI | GATC | 7 cut(s) | 118, 500, 796, 978, 1033, 1189, 1268 |
| DpnII | GATC | 7 cut(s) | 116, 498, 794, 976, 1031, 1187, 1266 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 707 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 707 |
| Eam1104I | CTCTTC | 2 cut(s) | 1034, 1056 |
| EarI | CTCTTC | 2 cut(s) | 1034, 1056 |
| Eco130I | CCWWGG | 2 cut(s) | 173, 349 |
| Eco24I | GRGCYC | 2 cut(s) | 417, 560 |
| Eco31I | GGTCTC | 1 cut(s) | 399 |
| Eco32I | GATATC | 1 cut(s) | 842 |
| Eco47I | GGWCC | 2 cut(s) | 302, 338 |
| Eco57I | CTGAAG | 1 cut(s) | 443 |
| Eco81I | CCTNAGG | 2 cut(s) | 561, 573 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 834 |
| EcoO109I | RGGNCCY | 2 cut(s) | 302, 557 |
| EcoRI | GAATTC | 1 cut(s) | 920 |
| EcoRV | GATATC | 1 cut(s) | 842 |
| EcoT14I | CCWWGG | 2 cut(s) | 173, 349 |
| EcoT38I | GRGCYC | 2 cut(s) | 417, 560 |
| ErhI | CCWWGG | 2 cut(s) | 173, 349 |
| Esp3I | CGTCTC | 2 cut(s) | 1039, 1237 |
| FaeI | CATG | 8 cut(s) | 139, 225, 338, 506, 553, 643, 928, 1142 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 879, 911 |
| FaqI | GGGAC | 1 cut(s) | 32 |
| FatI | CATG | 8 cut(s) | 135, 221, 334, 502, 549, 639, 924, 1138 |
| FbaI | TGATCA | 1 cut(s) | 976 |
| FblI | GTMKAC | 1 cut(s) | 933 |
| FokI | GGATG | 2 cut(s) | 477, 1033 |
| FriOI | GRGCYC | 2 cut(s) | 417, 560 |
| FspBI | CTAG | 2 cut(s) | 101, 1297 |
| GlaI | GCGC | 2 cut(s) | 146, 669 |
| GsuI | CTGGAG | 1 cut(s) | 1261 |
| HaeII | RGCGCY | 1 cut(s) | 671 |
| HaeIII | GGCC | 4 cut(s) | 178, 558, 816, 1249 |
| HapII | CCGG | 1 cut(s) | 545 |
| HgaI | GACGC | 1 cut(s) | 383 |
| HhaI | GCGC | 2 cut(s) | 147, 670 |
| Hin1II | CATG | 8 cut(s) | 139, 225, 338, 506, 553, 643, 928, 1142 |
| Hin6I | GCGC | 2 cut(s) | 145, 668 |
| HinP1I | GCGC | 2 cut(s) | 145, 668 |
| HincII | GTYRAC | 4 cut(s) | 409, 694, 964, 1074 |
| HindII | GTYRAC | 4 cut(s) | 409, 694, 964, 1074 |
| HinfI | GANTC | 5 cut(s) | 272, 427, 445, 541, 1171 |
| HpaII | CCGG | 1 cut(s) | 545 |
| HphI | GGTGA | 3 cut(s) | 315, 454, 728 |
| Hpy166II | GTNNAC | 6 cut(s) | 409, 694, 934, 964, 1074, 1284 |
| Hpy188I | TCNGA | 2 cut(s) | 128, 976 |
| Hpy188III | TCNNGA | 4 cut(s) | 114, 563, 1145, 1177 |
| Hpy8I | GTNNAC | 6 cut(s) | 409, 694, 934, 964, 1074, 1284 |
| HpyAV | CCTTC | 3 cut(s) | 54, 378, 830 |
| HpyCH4III | ACNGT | 5 cut(s) | 55, 691, 789, 944, 1050 |
| HpyCH4V | TGCA | 5 cut(s) | 141, 311, 1028, 1118, 1130 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 555, 624 |
| HpyF3I | CTNAG | 7 cut(s) | 108, 297, 364, 513, 561, 573, 1167 |
| Hsp92II | CATG | 8 cut(s) | 139, 225, 338, 506, 553, 643, 928, 1142 |
| HspAI | GCGC | 2 cut(s) | 145, 668 |
| Ksp22I | TGATCA | 1 cut(s) | 976 |
| Kzo9I | GATC | 7 cut(s) | 116, 498, 794, 976, 1031, 1187, 1266 |
| LweI | GCATC | 1 cut(s) | 1127 |
| MaeI | CTAG | 2 cut(s) | 101, 1297 |
| MalI | GATC | 7 cut(s) | 118, 500, 796, 978, 1033, 1189, 1268 |
| MboI | GATC | 7 cut(s) | 116, 498, 794, 976, 1031, 1187, 1266 |
| MflI | RGATCY | 3 cut(s) | 116, 498, 1187 |
| MhlI | GDGCHC | 2 cut(s) | 417, 560 |
| MluCI | AATT | 9 cut(s) | 319, 507, 566, 633, 780, 825, 920, 999, 1084 |
| MlyI | GAGTC | 3 cut(s) | 454, 535, 1165 |
| MmeI | TCCRAC | 2 cut(s) | 106, 498 |
| MseI | TTAA | 1 cut(s) | 1154 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1262 |
| MspI | CCGG | 1 cut(s) | 545 |
| MspR9I | CCNGG | 1 cut(s) | 546 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 555, 624 |
| NciI | CCSGG | 1 cut(s) | 546 |
| NdeII | GATC | 7 cut(s) | 116, 498, 794, 976, 1031, 1187, 1266 |
| NheI | GCTAGC | 1 cut(s) | 100 |
| NlaIII | CATG | 8 cut(s) | 139, 225, 338, 506, 553, 643, 928, 1142 |
| NlaIV | GGNNCC | 2 cut(s) | 303, 558 |
| NspI | RCATGY | 5 cut(s) | 139, 225, 553, 643, 1142 |
| NspV | TTCGAA | 1 cut(s) | 1059 |
| PciI | ACATGT | 3 cut(s) | 135, 221, 1138 |
| PfeI | GAWTC | 2 cut(s) | 272, 427 |
| Ple19I | CGATCG | 1 cut(s) | 797 |
| PleI | GAGTC | 3 cut(s) | 453, 535, 1165 |
| PpsI | GAGTC | 3 cut(s) | 453, 535, 1165 |
| PpuMI | RGGWCCY | 1 cut(s) | 302 |
| PscI | ACATGT | 3 cut(s) | 135, 221, 1138 |
| Psp5II | RGGWCCY | 1 cut(s) | 302 |
| PspN4I | GGNNCC | 2 cut(s) | 303, 558 |
| PspOMI | GGGCCC | 1 cut(s) | 556 |
| PspPI | GGNCC | 5 cut(s) | 177, 302, 338, 556, 557 |
| PspPPI | RGGWCCY | 1 cut(s) | 302 |
| PstNI | CAGNNNCTG | 1 cut(s) | 119 |
| PsuI | RGATCY | 3 cut(s) | 116, 498, 1187 |
| PvuI | CGATCG | 1 cut(s) | 797 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1262 |
| SaqAI | TTAA | 1 cut(s) | 1154 |
| Sau3AI | GATC | 7 cut(s) | 116, 498, 794, 976, 1031, 1187, 1266 |
| Sau96I | GGNCC | 5 cut(s) | 177, 302, 338, 556, 557 |
| SchI | GAGTC | 3 cut(s) | 454, 535, 1165 |
| ScrFI | CCNGG | 1 cut(s) | 546 |
| SduI | GDGCHC | 2 cut(s) | 417, 560 |
| SetI | ASST | 9 cut(s) | 106, 343, 444, 574, 732, 972, 1068, 1229, 1241 |
| SfaNI | GCATC | 1 cut(s) | 1127 |
| SfuI | TTCGAA | 1 cut(s) | 1059 |
| SinI | GGWCC | 2 cut(s) | 302, 338 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1262 |
| Sse9I | AATT | 9 cut(s) | 319, 507, 566, 633, 780, 825, 920, 999, 1084 |
| SsiI | CCGC | 2 cut(s) | 391, 986 |
| SspI | AATATT | 1 cut(s) | 916 |
| SspMI | CTAG | 2 cut(s) | 101, 1297 |
| StyD4I | CCNGG | 1 cut(s) | 544 |
| StyI | CCWWGG | 2 cut(s) | 173, 349 |
| TaaI | ACNGT | 5 cut(s) | 55, 691, 789, 944, 1050 |
| TaqI | TCGA | 4 cut(s) | 258, 793, 1059, 1178 |
| TaqII | GACCGA | 1 cut(s) | 60 |
| TasI | AATT | 9 cut(s) | 319, 507, 566, 633, 780, 825, 920, 999, 1084 |
| TfiI | GAWTC | 2 cut(s) | 272, 427 |
| Tru1I | TTAA | 1 cut(s) | 1154 |
| Tru9I | TTAA | 1 cut(s) | 1154 |
| TscAI | CASTG | 3 cut(s) | 84, 744, 947 |
| TspDTI | ATGAA | 5 cut(s) | 519, 888, 913, 1023, 1173 |
| TspGWI | ACGGA | 1 cut(s) | 1259 |
| TspRI | CASTG | 3 cut(s) | 84, 744, 947 |
| VpaK11BI | GGWCC | 2 cut(s) | 302, 338 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 834 |
| XapI | RAATTY | 4 cut(s) | 507, 780, 920, 999 |
| XceI | RCATGY | 5 cut(s) | 139, 225, 553, 643, 1142 |
| XmiI | GTMKAC | 1 cut(s) | 933 |
| XspI | CTAG | 2 cut(s) | 101, 1297 |