ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 456 |
| AciI | CCGC | 2 cut(s) | 302, 463 |
| AclI | AACGTT | 1 cut(s) | 91 |
| AcoI | YGGCCR | 2 cut(s) | 18, 552 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AcyI | GRCGYC | 1 cut(s) | 457 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 547 |
| AgsI | TTSAA | 3 cut(s) | 395, 413, 484 |
| AjnI | CCWGG | 1 cut(s) | 65 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 77, 109 |
| AluBI | AGCT | 5 cut(s) | 14, 203, 407, 506, 524 |
| AluI | AGCT | 5 cut(s) | 14, 203, 407, 506, 524 |
| Alw21I | GWGCWC | 1 cut(s) | 130 |
| Alw44I | GTGCAC | 1 cut(s) | 126 |
| Ama87I | CYCGRG | 1 cut(s) | 248 |
| AoxI | GGCC | 2 cut(s) | 18, 552 |
| ApaLI | GTGCAC | 1 cut(s) | 126 |
| ApeKI | GCWGC | 2 cut(s) | 203, 206 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| AspLEI | GCGC | 1 cut(s) | 459 |
| AspS9I | GGNCC | 2 cut(s) | 97, 493 |
| AsuC2I | CCSGG | 1 cut(s) | 8 |
| AvaI | CYCGRG | 1 cut(s) | 248 |
| AvaII | GGWCC | 2 cut(s) | 97, 493 |
| BaeGI | GKGCMC | 1 cut(s) | 130 |
| BanI | GGYRCC | 1 cut(s) | 456 |
| Bbv12I | GWGCWC | 1 cut(s) | 130 |
| BbvI | GCAGC | 2 cut(s) | 190, 193 |
| BceAI | ACGGC | 1 cut(s) | 525 |
| BciT130I | CCWGG | 1 cut(s) | 67 |
| BclI | TGATCA | 1 cut(s) | 379 |
| BcnI | CCSGG | 1 cut(s) | 8 |
| BfaI | CTAG | 2 cut(s) | 234, 468 |
| BfoI | RGCGCY | 1 cut(s) | 460 |
| BisI | GCNGC | 2 cut(s) | 204, 207 |
| BlsI | GCNGC | 2 cut(s) | 205, 208 |
| Bme1390I | CCNGG | 2 cut(s) | 8, 67 |
| Bme18I | GGWCC | 2 cut(s) | 97, 493 |
| BmeT110I | CYCGRG | 1 cut(s) | 248 |
| BmgT120I | GGNCC | 2 cut(s) | 97, 493 |
| BmiI | GGNNCC | 2 cut(s) | 458, 494 |
| BmrFI | CCNGG | 2 cut(s) | 8, 67 |
| BmsI | GCATC | 2 cut(s) | 252, 289 |
| BpmI | CTGGAG | 1 cut(s) | 53 |
| BpuMI | CCSGG | 1 cut(s) | 8 |
| BsaBI | GATNNNNATC | 1 cut(s) | 180 |
| BsaHI | GRCGYC | 1 cut(s) | 457 |
| BsaJI | CCNNGG | 3 cut(s) | 66, 227, 438 |
| BsaWI | WCCGGW | 1 cut(s) | 99 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 145, 175 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 547 |
| Bse118I | RCCGGY | 1 cut(s) | 554 |
| Bse1I | ACTGG | 1 cut(s) | 212 |
| Bse8I | GATNNNNATC | 1 cut(s) | 180 |
| BseBI | CCWGG | 1 cut(s) | 67 |
| BseDI | CCNNGG | 3 cut(s) | 66, 227, 438 |
| BseGI | GGATG | 2 cut(s) | 267, 304 |
| BseJI | GATNNNNATC | 1 cut(s) | 180 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 547 |
| BseNI | ACTGG | 1 cut(s) | 212 |
| BseSI | GKGCMC | 1 cut(s) | 130 |
| BseXI | GCAGC | 2 cut(s) | 190, 193 |
| BsgI | GTGCAG | 1 cut(s) | 192 |
| BshFI | GGCC | 2 cut(s) | 20, 554 |
| BshNI | GGYRCC | 1 cut(s) | 456 |
| BsiHKAI | GWGCWC | 1 cut(s) | 130 |
| BsiHKCI | CYCGRG | 1 cut(s) | 248 |
| BsiSI | CCGG | 3 cut(s) | 7, 100, 555 |
| BslFI | GGGAC | 1 cut(s) | 506 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 547 |
| BsmFI | GGGAC | 1 cut(s) | 506 |
| BsnI | GGCC | 2 cut(s) | 20, 554 |
| BsoBI | CYCGRG | 1 cut(s) | 248 |
| Bsp1286I | GDGCHC | 1 cut(s) | 130 |
| Bsp143I | GATC | 2 cut(s) | 175, 379 |
| BspACI | CCGC | 2 cut(s) | 302, 463 |
| BspANI | GGCC | 2 cut(s) | 20, 554 |
| BspLI | GGNNCC | 2 cut(s) | 458, 494 |
| BspQI | GCTCTTC | 1 cut(s) | 414 |
| BspT107I | GGYRCC | 1 cut(s) | 456 |
| BsrFI | RCCGGY | 1 cut(s) | 554 |
| BsrI | ACTGG | 1 cut(s) | 212 |
| BssAI | RCCGGY | 1 cut(s) | 554 |
| BssECI | CCNNGG | 3 cut(s) | 66, 227, 438 |
| BssMI | GATC | 2 cut(s) | 175, 379 |
| BssNI | GRCGYC | 1 cut(s) | 457 |
| BssT1I | CCWWGG | 2 cut(s) | 227, 438 |
| Bst2UI | CCWGG | 1 cut(s) | 67 |
| Bst4CI | ACNGT | 2 cut(s) | 26, 77 |
| Bst6I | CTCTTC | 1 cut(s) | 414 |
| BstACI | GRCGYC | 1 cut(s) | 457 |
| BstC8I | GCNNGC | 2 cut(s) | 126, 461 |
| BstDEI | CTNAG | 2 cut(s) | 144, 348 |
| BstF5I | GGATG | 2 cut(s) | 267, 304 |
| BstH2I | RGCGCY | 1 cut(s) | 460 |
| BstHHI | GCGC | 1 cut(s) | 459 |
| BstKTI | GATC | 2 cut(s) | 178, 382 |
| BstMBI | GATC | 2 cut(s) | 175, 379 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 244 |
| BstNI | CCWGG | 1 cut(s) | 67 |
| BstSCI | CCNGG | 2 cut(s) | 6, 65 |
| BstSLI | GKGCMC | 1 cut(s) | 130 |
| BstV1I | GCAGC | 2 cut(s) | 190, 193 |
| BsuRI | GGCC | 2 cut(s) | 20, 554 |
| BtsCI | GGATG | 2 cut(s) | 267, 304 |
| BtsI | GCAGTG | 1 cut(s) | 155 |
| BtsIMutI | CAGTG | 1 cut(s) | 155 |
| Cac8I | GCNNGC | 2 cut(s) | 126, 461 |
| CfoI | GCGC | 1 cut(s) | 459 |
| Cfr10I | RCCGGY | 1 cut(s) | 554 |
| Cfr13I | GGNCC | 2 cut(s) | 97, 493 |
| CviAII | CATG | 1 cut(s) | 269 |
| CviJI | RGCY | 9 cut(s) | 14, 20, 203, 247, 407, 506, 524, 540, 554 |
| CviKI_1 | RGCY | 9 cut(s) | 14, 20, 203, 247, 407, 506, 524, 540, 554 |
| DdeI | CTNAG | 2 cut(s) | 144, 348 |
| DinI | GGCGCC | 1 cut(s) | 458 |
| DpnI | GATC | 2 cut(s) | 177, 381 |
| DpnII | GATC | 2 cut(s) | 175, 379 |
| EaeI | YGGCCR | 2 cut(s) | 18, 552 |
| Eam1104I | CTCTTC | 1 cut(s) | 414 |
| EarI | CTCTTC | 1 cut(s) | 414 |
| Eco130I | CCWWGG | 2 cut(s) | 227, 438 |
| Eco47I | GGWCC | 2 cut(s) | 97, 493 |
| Eco88I | CYCGRG | 1 cut(s) | 248 |
| EcoRII | CCWGG | 1 cut(s) | 65 |
| EcoT14I | CCWWGG | 2 cut(s) | 227, 438 |
| EgeI | GGCGCC | 1 cut(s) | 458 |
| EheI | GGCGCC | 1 cut(s) | 458 |
| ErhI | CCWWGG | 2 cut(s) | 227, 438 |
| FaeI | CATG | 1 cut(s) | 272 |
| FaiI | YATR | 9 cut(s) | 41, 81, 180, 257, 270, 359, 423, 478, 498 |
| FaqI | GGGAC | 1 cut(s) | 506 |
| FatI | CATG | 1 cut(s) | 268 |
| FauI | CCCGC | 1 cut(s) | 295 |
| FbaI | TGATCA | 1 cut(s) | 379 |
| Fnu4HI | GCNGC | 2 cut(s) | 204, 207 |
| FokI | GGATG | 2 cut(s) | 274, 311 |
| Fsp4HI | GCNGC | 2 cut(s) | 204, 207 |
| FspBI | CTAG | 2 cut(s) | 234, 468 |
| GlaI | GCGC | 1 cut(s) | 458 |
| GluI | GCNGC | 2 cut(s) | 204, 207 |
| GsuI | CTGGAG | 1 cut(s) | 53 |
| HaeII | RGCGCY | 1 cut(s) | 460 |
| HaeIII | GGCC | 2 cut(s) | 20, 554 |
| HapII | CCGG | 3 cut(s) | 7, 100, 555 |
| HhaI | GCGC | 1 cut(s) | 459 |
| Hin1I | GRCGYC | 1 cut(s) | 457 |
| Hin1II | CATG | 1 cut(s) | 272 |
| Hin6I | GCGC | 1 cut(s) | 457 |
| HinP1I | GCGC | 1 cut(s) | 457 |
| HindIII | AAGCTT | 2 cut(s) | 12, 522 |
| HpaII | CCGG | 3 cut(s) | 7, 100, 555 |
| Hpy166II | GTNNAC | 2 cut(s) | 128, 281 |
| Hpy188I | TCNGA | 2 cut(s) | 175, 221 |
| Hpy188III | TCNNGA | 3 cut(s) | 32, 250, 468 |
| Hpy8I | GTNNAC | 2 cut(s) | 128, 281 |
| HpyAV | CCTTC | 1 cut(s) | 79 |
| HpyCH4III | ACNGT | 2 cut(s) | 26, 77 |
| HpyCH4IV | ACGT | 2 cut(s) | 91, 535 |
| HpyCH4V | TGCA | 5 cut(s) | 111, 128, 209, 265, 584 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 244 |
| HpyF3I | CTNAG | 2 cut(s) | 144, 348 |
| HpySE526I | ACGT | 2 cut(s) | 91, 535 |
| Hsp92I | GRCGYC | 1 cut(s) | 457 |
| Hsp92II | CATG | 1 cut(s) | 272 |
| HspAI | GCGC | 1 cut(s) | 457 |
| KasI | GGCGCC | 1 cut(s) | 456 |
| Ksp22I | TGATCA | 1 cut(s) | 379 |
| Kzo9I | GATC | 2 cut(s) | 175, 379 |
| LguI | GCTCTTC | 1 cut(s) | 414 |
| Lsp1109I | GCAGC | 2 cut(s) | 190, 193 |
| LweI | GCATC | 2 cut(s) | 252, 289 |
| MaeI | CTAG | 2 cut(s) | 234, 468 |
| MaeII | ACGT | 2 cut(s) | 91, 535 |
| MaeIII | GTNAC | 1 cut(s) | 151 |
| MalI | GATC | 2 cut(s) | 177, 381 |
| MboI | GATC | 2 cut(s) | 175, 379 |
| MboII | GAAGA | 3 cut(s) | 284, 401, 455 |
| MfeI | CAATTG | 1 cut(s) | 118 |
| MhlI | GDGCHC | 1 cut(s) | 130 |
| MluCI | AATT | 6 cut(s) | 118, 413, 428, 499, 565, 578 |
| Mly113I | GGCGCC | 1 cut(s) | 457 |
| MnlI | CCTC | 5 cut(s) | 28, 171, 190, 312, 481 |
| MspA1I | CMGCKG | 1 cut(s) | 463 |
| MspI | CCGG | 3 cut(s) | 7, 100, 555 |
| MspR9I | CCNGG | 2 cut(s) | 8, 67 |
| MunI | CAATTG | 1 cut(s) | 118 |
| MvaI | CCWGG | 1 cut(s) | 67 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 244 |
| NarI | GGCGCC | 1 cut(s) | 457 |
| NciI | CCSGG | 1 cut(s) | 8 |
| NdeII | GATC | 2 cut(s) | 175, 379 |
| NlaIII | CATG | 1 cut(s) | 272 |
| NlaIV | GGNNCC | 2 cut(s) | 458, 494 |
| NmuCI | GTSAC | 1 cut(s) | 151 |
| PaeR7I | CTCGAG | 1 cut(s) | 248 |
| PciSI | GCTCTTC | 1 cut(s) | 414 |
| PfoI | TCCNGGA | 1 cut(s) | 6 |
| PkrI | GCNGC | 2 cut(s) | 205, 208 |
| PluTI | GGCGCC | 1 cut(s) | 460 |
| Psp1406I | AACGTT | 1 cut(s) | 91 |
| Psp6I | CCWGG | 1 cut(s) | 65 |
| PspGI | CCWGG | 1 cut(s) | 65 |
| PspN4I | GGNNCC | 2 cut(s) | 458, 494 |
| PspPI | GGNCC | 2 cut(s) | 97, 493 |
| SapI | GCTCTTC | 1 cut(s) | 414 |
| SatI | GCNGC | 2 cut(s) | 204, 207 |
| Sau3AI | GATC | 2 cut(s) | 175, 379 |
| Sau96I | GGNCC | 2 cut(s) | 97, 493 |
| ScrFI | CCNGG | 2 cut(s) | 8, 67 |
| SduI | GDGCHC | 1 cut(s) | 130 |
| SfaNI | GCATC | 2 cut(s) | 252, 289 |
| SfoI | GGCGCC | 1 cut(s) | 458 |
| Sfr274I | CTCGAG | 1 cut(s) | 248 |
| SinI | GGWCC | 2 cut(s) | 97, 493 |
| SlaI | CTCGAG | 1 cut(s) | 248 |
| SmlI | CTYRAG | 1 cut(s) | 248 |
| SmoI | CTYRAG | 1 cut(s) | 248 |
| Sse9I | AATT | 6 cut(s) | 118, 413, 428, 499, 565, 578 |
| SsiI | CCGC | 2 cut(s) | 302, 463 |
| SspDI | GGCGCC | 1 cut(s) | 456 |
| SspMI | CTAG | 2 cut(s) | 234, 468 |
| StyD4I | CCNGG | 2 cut(s) | 6, 65 |
| StyI | CCWWGG | 2 cut(s) | 227, 438 |
| TaaI | ACNGT | 2 cut(s) | 26, 77 |
| TaiI | ACGT | 2 cut(s) | 94, 538 |
| TaqI | TCGA | 1 cut(s) | 249 |
| TasI | AATT | 6 cut(s) | 118, 413, 428, 499, 565, 578 |
| TscAI | CASTG | 1 cut(s) | 162 |
| TseFI | GTSAC | 1 cut(s) | 151 |
| TseI | GCWGC | 2 cut(s) | 203, 206 |
| Tsp45I | GTSAC | 1 cut(s) | 151 |
| TspDTI | ATGAA | 3 cut(s) | 285, 380, 441 |
| TspGWI | ACGGA | 2 cut(s) | 341, 363 |
| TspRI | CASTG | 1 cut(s) | 162 |
| VneI | GTGCAC | 1 cut(s) | 126 |
| VpaK11BI | GGWCC | 2 cut(s) | 97, 493 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XbaI | TCTAGA | 1 cut(s) | 467 |
| XhoI | CTCGAG | 1 cut(s) | 248 |
| XspI | CTAG | 2 cut(s) | 234, 468 |