Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 407 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 495 |
| AciI | CCGC | 1 cut(s) | 188 |
| AclWI | GGATC | 3 cut(s) | 291, 304, 480 |
| AcuI | CTGAAG | 1 cut(s) | 689 |
| AfaI | GTAC | 1 cut(s) | 655 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 306, 495, 625, 692 |
| AflIII | ACRYGT | 2 cut(s) | 152, 238 |
| AgsI | TTSAA | 1 cut(s) | 169 |
| AjiI | CACGTC | 1 cut(s) | 155 |
| AjnI | CCWGG | 2 cut(s) | 404, 440 |
| AluBI | AGCT | 1 cut(s) | 383 |
| AluI | AGCT | 1 cut(s) | 383 |
| AlwI | GGATC | 3 cut(s) | 291, 304, 480 |
| AoxI | GGCC | 3 cut(s) | 208, 573, 700 |
| ApeKI | GCWGC | 2 cut(s) | 335, 383 |
| AseI | ATTAAT | 1 cut(s) | 566 |
| AspS9I | GGNCC | 1 cut(s) | 208 |
| AsuC2I | CCSGG | 1 cut(s) | 294 |
| AsuHPI | GGTGA | 2 cut(s) | 62, 535 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 225, 258 |
| BamHI | GGATCC | 1 cut(s) | 296 |
| BanII | GRGCYC | 1 cut(s) | 67 |
| BauI | CACGAG | 1 cut(s) | 316 |
| BbvI | GCAGC | 2 cut(s) | 322, 370 |
| BccI | CCATC | 3 cut(s) | 155, 406, 547 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 22, 56 |
| BciT130I | CCWGG | 2 cut(s) | 406, 442 |
| BcnI | CCSGG | 1 cut(s) | 294 |
| BfaI | CTAG | 2 cut(s) | 122, 380 |
| BfmI | CTRYAG | 1 cut(s) | 31 |
| BfuAI | ACCTGC | 1 cut(s) | 407 |
| BisI | GCNGC | 2 cut(s) | 336, 384 |
| BlsI | GCNGC | 2 cut(s) | 337, 385 |
| Bme1390I | CCNGG | 3 cut(s) | 294, 406, 442 |
| BmgBI | CACGTC | 1 cut(s) | 155 |
| BmgT120I | GGNCC | 1 cut(s) | 208 |
| BmiI | GGNNCC | 1 cut(s) | 298 |
| BmrFI | CCNGG | 3 cut(s) | 294, 406, 442 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 185, 217 |
| BpuMI | CCSGG | 1 cut(s) | 294 |
| BsaJI | CCNNGG | 1 cut(s) | 404 |
| BsaWI | WCCGGW | 1 cut(s) | 618 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 620, 650 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 306, 495, 625, 692 |
| Bse3DI | GCAATG | 2 cut(s) | 553, 687 |
| BseBI | CCWGG | 2 cut(s) | 406, 442 |
| BseDI | CCNNGG | 1 cut(s) | 404 |
| BseGI | GGATG | 1 cut(s) | 235 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 306, 495, 625, 692 |
| BseMI | GCAATG | 2 cut(s) | 553, 687 |
| BseMII | CTCAG | 1 cut(s) | 547 |
| BseRI | GAGGAG | 3 cut(s) | 209, 641, 662 |
| BseXI | GCAGC | 2 cut(s) | 322, 370 |
| BsgI | GTGCAG | 1 cut(s) | 369 |
| BshFI | GGCC | 3 cut(s) | 210, 575, 702 |
| BsiSI | CCGG | 2 cut(s) | 293, 619 |
| BslFI | GGGAC | 1 cut(s) | 750 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 306, 495, 625, 692 |
| BsmFI | GGGAC | 1 cut(s) | 750 |
| BsnI | GGCC | 3 cut(s) | 210, 575, 702 |
| Bsp1286I | GDGCHC | 1 cut(s) | 67 |
| Bsp1407I | TGTACA | 1 cut(s) | 653 |
| Bsp143I | GATC | 4 cut(s) | 138, 296, 301, 472 |
| BspACI | CCGC | 1 cut(s) | 188 |
| BspANI | GGCC | 3 cut(s) | 210, 575, 702 |
| BspCNI | CTCAG | 1 cut(s) | 546 |
| BspLI | GGNNCC | 1 cut(s) | 298 |
| BspMAI | CTGCAG | 1 cut(s) | 35 |
| BspMI | ACCTGC | 1 cut(s) | 407 |
| BspPI | GGATC | 3 cut(s) | 291, 304, 480 |
| BsrDI | GCAATG | 2 cut(s) | 553, 687 |
| BsrGI | TGTACA | 1 cut(s) | 653 |
| BssECI | CCNNGG | 1 cut(s) | 404 |
| BssMI | GATC | 4 cut(s) | 138, 296, 301, 472 |
| BssSI | CACGAG | 1 cut(s) | 316 |
| Bst2BI | CACGAG | 1 cut(s) | 316 |
| Bst2UI | CCWGG | 2 cut(s) | 406, 442 |
| Bst4CI | ACNGT | 1 cut(s) | 50 |
| BstAUI | TGTACA | 1 cut(s) | 653 |
| BstDEI | CTNAG | 1 cut(s) | 533 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 690 |
| BstF5I | GGATG | 1 cut(s) | 235 |
| BstKTI | GATC | 4 cut(s) | 141, 299, 304, 475 |
| BstMBI | GATC | 4 cut(s) | 138, 296, 301, 472 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 592 |
| BstNI | CCWGG | 2 cut(s) | 406, 442 |
| BstNSI | RCATGY | 1 cut(s) | 242 |
| BstSCI | CCNGG | 3 cut(s) | 292, 404, 440 |
| BstSFI | CTRYAG | 1 cut(s) | 31 |
| BstV1I | GCAGC | 2 cut(s) | 322, 370 |
| BstX2I | RGATCY | 1 cut(s) | 296 |
| BstYI | RGATCY | 1 cut(s) | 296 |
| BsuRI | GGCC | 3 cut(s) | 210, 575, 702 |
| BtrI | CACGTC | 1 cut(s) | 155 |
| BtsCI | GGATG | 1 cut(s) | 235 |
| BveI | ACCTGC | 1 cut(s) | 407 |
| Cfr13I | GGNCC | 1 cut(s) | 208 |
| CsiI | ACCWGGT | 1 cut(s) | 440 |
| Csp6I | GTAC | 1 cut(s) | 654 |
| CviAII | CATG | 4 cut(s) | 191, 239, 339, 753 |
| CviQI | GTAC | 1 cut(s) | 654 |
| DdeI | CTNAG | 1 cut(s) | 533 |
| DpnI | GATC | 4 cut(s) | 140, 298, 303, 474 |
| DpnII | GATC | 4 cut(s) | 138, 296, 301, 472 |
| Eco147I | AGGCCT | 1 cut(s) | 575 |
| Eco24I | GRGCYC | 1 cut(s) | 67 |
| Eco57I | CTGAAG | 1 cut(s) | 689 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 690 |
| EcoO109I | RGGNCCY | 1 cut(s) | 208 |
| EcoRII | CCWGG | 2 cut(s) | 404, 440 |
| EcoT38I | GRGCYC | 1 cut(s) | 67 |
| FaeI | CATG | 4 cut(s) | 194, 242, 342, 756 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 452, 484 |
| FaqI | GGGAC | 1 cut(s) | 750 |
| FatI | CATG | 4 cut(s) | 190, 238, 338, 752 |
| Fnu4HI | GCNGC | 2 cut(s) | 336, 384 |
| FokI | GGATG | 1 cut(s) | 242 |
| FriOI | GRGCYC | 1 cut(s) | 67 |
| Fsp4HI | GCNGC | 2 cut(s) | 336, 384 |
| FspBI | CTAG | 2 cut(s) | 122, 380 |
| GluI | GCNGC | 2 cut(s) | 336, 384 |
| HaeIII | GGCC | 3 cut(s) | 210, 575, 702 |
| HapII | CCGG | 2 cut(s) | 293, 619 |
| Hin1II | CATG | 4 cut(s) | 194, 242, 342, 756 |
| HincII | GTYRAC | 1 cut(s) | 46 |
| HindII | GTYRAC | 1 cut(s) | 46 |
| HinfI | GANTC | 6 cut(s) | 39, 143, 200, 430, 545, 603 |
| HpaI | GTTAAC | 1 cut(s) | 46 |
| HpaII | CCGG | 2 cut(s) | 293, 619 |
| HphI | GGTGA | 2 cut(s) | 62, 535 |
| Hpy166II | GTNNAC | 4 cut(s) | 46, 225, 315, 654 |
| Hpy188I | TCNGA | 4 cut(s) | 115, 301, 544, 550 |
| Hpy188III | TCNNGA | 1 cut(s) | 316 |
| Hpy8I | GTNNAC | 4 cut(s) | 46, 225, 315, 654 |
| Hpy99I | CGWCG | 1 cut(s) | 159 |
| HpyAV | CCTTC | 2 cut(s) | 637, 713 |
| HpyCH4III | ACNGT | 1 cut(s) | 50 |
| HpyCH4IV | ACGT | 3 cut(s) | 98, 154, 739 |
| HpyCH4V | TGCA | 4 cut(s) | 33, 338, 386, 752 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 592 |
| HpyF3I | CTNAG | 1 cut(s) | 533 |
| HpySE526I | ACGT | 3 cut(s) | 98, 154, 739 |
| Hsp92II | CATG | 4 cut(s) | 194, 242, 342, 756 |
| KspAI | GTTAAC | 1 cut(s) | 46 |
| Kzo9I | GATC | 4 cut(s) | 138, 296, 301, 472 |
| Lsp1109I | GCAGC | 2 cut(s) | 322, 370 |
| MabI | ACCWGGT | 1 cut(s) | 440 |
| MaeI | CTAG | 2 cut(s) | 122, 380 |
| MaeII | ACGT | 3 cut(s) | 98, 154, 739 |
| MaeIII | GTNAC | 1 cut(s) | 3 |
| MalI | GATC | 4 cut(s) | 140, 298, 303, 474 |
| MboI | GATC | 4 cut(s) | 138, 296, 301, 472 |
| MflI | RGATCY | 1 cut(s) | 296 |
| MhlI | GDGCHC | 1 cut(s) | 67 |
| MluCI | AATT | 3 cut(s) | 216, 567, 711 |
| MlyI | GAGTC | 4 cut(s) | 137, 194, 439, 597 |
| MmeI | TCCRAC | 2 cut(s) | 93, 573 |
| MseI | TTAA | 2 cut(s) | 45, 566 |
| MslI | CAYNNNNRTG | 3 cut(s) | 243, 273, 391 |
| MspI | CCGG | 2 cut(s) | 293, 619 |
| MspR9I | CCNGG | 3 cut(s) | 294, 406, 442 |
| MvaI | CCWGG | 2 cut(s) | 406, 442 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 592 |
| NciI | CCSGG | 1 cut(s) | 294 |
| NdeII | GATC | 4 cut(s) | 138, 296, 301, 472 |
| NlaIII | CATG | 4 cut(s) | 194, 242, 342, 756 |
| NlaIV | GGNNCC | 1 cut(s) | 298 |
| NspI | RCATGY | 1 cut(s) | 242 |
| PceI | AGGCCT | 1 cut(s) | 575 |
| PciI | ACATGT | 1 cut(s) | 238 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 472 |
| PfeI | GAWTC | 2 cut(s) | 39, 545 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 495 |
| PkrI | GCNGC | 2 cut(s) | 337, 385 |
| PleI | GAGTC | 4 cut(s) | 137, 194, 438, 597 |
| PpsI | GAGTC | 4 cut(s) | 137, 194, 438, 597 |
| PscI | ACATGT | 1 cut(s) | 238 |
| PshBI | ATTAAT | 1 cut(s) | 566 |
| Psp6I | CCWGG | 2 cut(s) | 404, 440 |
| PspGI | CCWGG | 2 cut(s) | 404, 440 |
| PspN4I | GGNNCC | 1 cut(s) | 298 |
| PspPI | GGNCC | 1 cut(s) | 208 |
| PstI | CTGCAG | 1 cut(s) | 35 |
| PsuI | RGATCY | 1 cut(s) | 296 |
| RsaI | GTAC | 1 cut(s) | 655 |
| RsaNI | GTAC | 1 cut(s) | 654 |
| RseI | CAYNNNNRTG | 3 cut(s) | 243, 273, 391 |
| SaqAI | TTAA | 2 cut(s) | 45, 566 |
| SatI | GCNGC | 2 cut(s) | 336, 384 |
| Sau3AI | GATC | 4 cut(s) | 138, 296, 301, 472 |
| Sau96I | GGNCC | 1 cut(s) | 208 |
| SchI | GAGTC | 4 cut(s) | 137, 194, 439, 597 |
| ScrFI | CCNGG | 3 cut(s) | 294, 406, 442 |
| SduI | GDGCHC | 1 cut(s) | 67 |
| SexAI | ACCWGGT | 1 cut(s) | 440 |
| SfcI | CTRYAG | 1 cut(s) | 31 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 243, 273, 391 |
| Sse9I | AATT | 3 cut(s) | 216, 567, 711 |
| SseBI | AGGCCT | 1 cut(s) | 575 |
| SsiI | CCGC | 1 cut(s) | 188 |
| SspMI | CTAG | 2 cut(s) | 122, 380 |
| StuI | AGGCCT | 1 cut(s) | 575 |
| StyD4I | CCNGG | 3 cut(s) | 292, 404, 440 |
| TaaI | ACNGT | 1 cut(s) | 50 |
| TaiI | ACGT | 3 cut(s) | 101, 157, 742 |
| TaqI | TCGA | 4 cut(s) | 141, 446, 475, 624 |
| TasI | AATT | 3 cut(s) | 216, 567, 711 |
| TatI | WGTACW | 1 cut(s) | 653 |
| TfiI | GAWTC | 2 cut(s) | 39, 545 |
| Tru1I | TTAA | 2 cut(s) | 45, 566 |
| Tru9I | TTAA | 2 cut(s) | 45, 566 |
| TseI | GCWGC | 2 cut(s) | 335, 383 |
| TspGWI | ACGGA | 1 cut(s) | 242 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 495 |
| VspI | ATTAAT | 1 cut(s) | 566 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 690 |
| XceI | RCATGY | 1 cut(s) | 242 |
| XspI | CTAG | 2 cut(s) | 122, 380 |