ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 611, 865 |
| AclWI | GGATC | 1 cut(s) | 570 |
| AcoI | YGGCCR | 1 cut(s) | 576 |
| AcsI | RAATTY | 2 cut(s) | 401, 596 |
| AcuI | CTGAAG | 1 cut(s) | 671 |
| AfaI | GTAC | 3 cut(s) | 331, 654, 764 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 104, 124 |
| AgeI | ACCGGT | 1 cut(s) | 235 |
| AgsI | TTSAA | 1 cut(s) | 259 |
| AjnI | CCWGG | 2 cut(s) | 317, 656 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 281, 313 |
| AluBI | AGCT | 6 cut(s) | 255, 374, 395, 422, 461, 782 |
| AluI | AGCT | 6 cut(s) | 255, 374, 395, 422, 461, 782 |
| Alw21I | GWGCWC | 1 cut(s) | 397 |
| Alw26I | GTCTC | 4 cut(s) | 67, 106, 177, 244 |
| AlwI | GGATC | 1 cut(s) | 570 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 292 |
| AoxI | GGCC | 2 cut(s) | 304, 576 |
| ApoI | RAATTY | 2 cut(s) | 401, 596 |
| AseI | ATTAAT | 1 cut(s) | 270 |
| AsiGI | ACCGGT | 1 cut(s) | 235 |
| AspS9I | GGNCC | 1 cut(s) | 305 |
| AsuC2I | CCSGG | 1 cut(s) | 106 |
| AsuHPI | GGTGA | 6 cut(s) | 25, 82, 292, 307, 548, 836 |
| BalI | TGGCCA | 1 cut(s) | 578 |
| BanII | GRGCYC | 1 cut(s) | 397 |
| BbsI | GAAGAC | 1 cut(s) | 458 |
| Bbv12I | GWGCWC | 1 cut(s) | 397 |
| BccI | CCATC | 3 cut(s) | 40, 53, 766 |
| BciT130I | CCWGG | 2 cut(s) | 319, 658 |
| BciVI | GTATCC | 1 cut(s) | 165 |
| BclI | TGATCA | 1 cut(s) | 427 |
| BcnI | CCSGG | 1 cut(s) | 106 |
| BcoDI | GTCTC | 4 cut(s) | 67, 106, 177, 244 |
| BfaI | CTAG | 2 cut(s) | 423, 801 |
| BfuI | GTATCC | 1 cut(s) | 165 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 575 |
| Bme1390I | CCNGG | 3 cut(s) | 106, 319, 658 |
| BmgT120I | GGNCC | 1 cut(s) | 305 |
| BmiI | GGNNCC | 1 cut(s) | 307 |
| BmrFI | CCNGG | 3 cut(s) | 106, 319, 658 |
| BmrI | ACTGGG | 2 cut(s) | 90, 142 |
| BmsI | GCATC | 2 cut(s) | 10, 118 |
| BmuI | ACTGGG | 2 cut(s) | 90, 142 |
| BoxI | GACNNNNGTC | 1 cut(s) | 142 |
| BpiI | GAAGAC | 1 cut(s) | 458 |
| BpmI | CTGGAG | 2 cut(s) | 314, 340 |
| Bpu10I | CCTNAGC | 1 cut(s) | 858 |
| BpuMI | CCSGG | 1 cut(s) | 106 |
| BsaBI | GATNNNNATC | 1 cut(s) | 726 |
| BsaI | GGTCTC | 1 cut(s) | 244 |
| BsaJI | CCNNGG | 4 cut(s) | 105, 309, 570, 656 |
| BsaWI | WCCGGW | 1 cut(s) | 235 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 313, 343, 605, 608, 635, 638 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 104, 124 |
| Bse118I | RCCGGY | 2 cut(s) | 235, 302 |
| Bse1I | ACTGG | 4 cut(s) | 85, 148, 297, 579 |
| Bse8I | GATNNNNATC | 1 cut(s) | 726 |
| BseBI | CCWGG | 2 cut(s) | 319, 658 |
| BseDI | CCNNGG | 4 cut(s) | 105, 309, 570, 656 |
| BseGI | GGATG | 1 cut(s) | 133 |
| BseJI | GATNNNNATC | 1 cut(s) | 726 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 104, 124 |
| BseMII | CTCAG | 1 cut(s) | 759 |
| BseNI | ACTGG | 4 cut(s) | 85, 148, 297, 579 |
| BseRI | GAGGAG | 1 cut(s) | 629 |
| BsgI | GTGCAG | 1 cut(s) | 728 |
| BshFI | GGCC | 2 cut(s) | 306, 578 |
| BshTI | ACCGGT | 1 cut(s) | 235 |
| BsiHKAI | GWGCWC | 1 cut(s) | 397 |
| BsiSI | CCGG | 3 cut(s) | 105, 236, 303 |
| BslFI | GGGAC | 1 cut(s) | 130 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 104, 124 |
| BsmAI | GTCTC | 4 cut(s) | 67, 106, 177, 244 |
| BsmFI | GGGAC | 1 cut(s) | 130 |
| BsnI | GGCC | 2 cut(s) | 306, 578 |
| Bso31I | GGTCTC | 1 cut(s) | 244 |
| Bsp1286I | GDGCHC | 1 cut(s) | 397 |
| Bsp143I | GATC | 3 cut(s) | 427, 562, 721 |
| Bsp19I | CCATGG | 2 cut(s) | 309, 570 |
| BspACI | CCGC | 2 cut(s) | 611, 865 |
| BspANI | GGCC | 2 cut(s) | 306, 578 |
| BspCNI | CTCAG | 1 cut(s) | 760 |
| BspHI | TCATGA | 1 cut(s) | 360 |
| BspLI | GGNNCC | 1 cut(s) | 307 |
| BspPI | GGATC | 1 cut(s) | 570 |
| BspTNI | GGTCTC | 1 cut(s) | 244 |
| BsrFI | RCCGGY | 2 cut(s) | 235, 302 |
| BsrI | ACTGG | 4 cut(s) | 85, 148, 297, 579 |
| BssAI | RCCGGY | 2 cut(s) | 235, 302 |
| BssECI | CCNNGG | 4 cut(s) | 105, 309, 570, 656 |
| BssMI | GATC | 3 cut(s) | 427, 562, 721 |
| BssT1I | CCWWGG | 2 cut(s) | 309, 570 |
| Bst2UI | CCWGG | 2 cut(s) | 319, 658 |
| Bst4CI | ACNGT | 1 cut(s) | 334 |
| Bst6I | CTCTTC | 1 cut(s) | 204 |
| BstDEI | CTNAG | 4 cut(s) | 230, 409, 768, 858 |
| BstDSI | CCRYGG | 2 cut(s) | 309, 570 |
| BstEII | GGTNACC | 1 cut(s) | 313 |
| BstF5I | GGATG | 1 cut(s) | 133 |
| BstKTI | GATC | 3 cut(s) | 430, 565, 724 |
| BstMAI | GTCTC | 4 cut(s) | 67, 106, 177, 244 |
| BstMBI | GATC | 3 cut(s) | 427, 562, 721 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 575 |
| BstNI | CCWGG | 2 cut(s) | 319, 658 |
| BstNSI | RCATGY | 1 cut(s) | 653 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 142 |
| BstPI | GGTNACC | 1 cut(s) | 313 |
| BstSCI | CCNGG | 3 cut(s) | 104, 317, 656 |
| BstV2I | GAAGAC | 1 cut(s) | 458 |
| BsuI | GTATCC | 1 cut(s) | 165 |
| BsuRI | GGCC | 2 cut(s) | 306, 578 |
| BtgI | CCRYGG | 2 cut(s) | 309, 570 |
| BtsCI | GGATG | 1 cut(s) | 133 |
| BtsIMutI | CAGTG | 1 cut(s) | 765 |
| CaiI | CAGNNNCTG | 1 cut(s) | 292 |
| CciI | TCATGA | 1 cut(s) | 360 |
| Cfr10I | RCCGGY | 2 cut(s) | 235, 302 |
| Cfr13I | GGNCC | 1 cut(s) | 305 |
| Csp6I | GTAC | 3 cut(s) | 330, 653, 763 |
| CspAI | ACCGGT | 1 cut(s) | 235 |
| CviAII | CATG | 8 cut(s) | 161, 168, 310, 361, 571, 589, 650, 848 |
| CviQI | GTAC | 3 cut(s) | 330, 653, 763 |
| DdeI | CTNAG | 4 cut(s) | 230, 409, 768, 858 |
| DpnI | GATC | 3 cut(s) | 429, 564, 723 |
| DpnII | GATC | 3 cut(s) | 427, 562, 721 |
| EaeI | YGGCCR | 1 cut(s) | 576 |
| Eam1104I | CTCTTC | 1 cut(s) | 204 |
| EarI | CTCTTC | 1 cut(s) | 204 |
| Ecl136II | GAGCTC | 1 cut(s) | 395 |
| Eco130I | CCWWGG | 2 cut(s) | 309, 570 |
| Eco24I | GRGCYC | 1 cut(s) | 397 |
| Eco31I | GGTCTC | 1 cut(s) | 244 |
| Eco53kI | GAGCTC | 1 cut(s) | 395 |
| Eco57I | CTGAAG | 1 cut(s) | 671 |
| Eco91I | GGTNACC | 1 cut(s) | 313 |
| EcoICRI | GAGCTC | 1 cut(s) | 395 |
| EcoO65I | GGTNACC | 1 cut(s) | 313 |
| EcoRII | CCWGG | 2 cut(s) | 317, 656 |
| EcoT14I | CCWWGG | 2 cut(s) | 309, 570 |
| EcoT38I | GRGCYC | 1 cut(s) | 397 |
| ErhI | CCWWGG | 2 cut(s) | 309, 570 |
| FaeI | CATG | 8 cut(s) | 164, 171, 313, 364, 574, 592, 653, 851 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 669, 701 |
| FaqI | GGGAC | 1 cut(s) | 130 |
| FatI | CATG | 8 cut(s) | 160, 167, 309, 360, 570, 588, 649, 847 |
| FauI | CCCGC | 1 cut(s) | 858 |
| FbaI | TGATCA | 1 cut(s) | 427 |
| FokI | GGATG | 1 cut(s) | 140 |
| FriOI | GRGCYC | 1 cut(s) | 397 |
| FspBI | CTAG | 2 cut(s) | 423, 801 |
| GsuI | CTGGAG | 2 cut(s) | 314, 340 |
| HaeIII | GGCC | 2 cut(s) | 306, 578 |
| HapII | CCGG | 3 cut(s) | 105, 236, 303 |
| Hin1II | CATG | 8 cut(s) | 164, 171, 313, 364, 574, 592, 653, 851 |
| HindIII | AAGCTT | 2 cut(s) | 372, 780 |
| HpaII | CCGG | 3 cut(s) | 105, 236, 303 |
| HphI | GGTGA | 6 cut(s) | 25, 82, 292, 307, 548, 836 |
| Hpy166II | GTNNAC | 2 cut(s) | 300, 765 |
| Hpy188I | TCNGA | 1 cut(s) | 182 |
| Hpy188III | TCNNGA | 3 cut(s) | 361, 398, 505 |
| Hpy8I | GTNNAC | 2 cut(s) | 300, 765 |
| Hpy99I | CGWCG | 2 cut(s) | 141, 495 |
| HpyAV | CCTTC | 3 cut(s) | 4, 541, 695 |
| HpyCH4III | ACNGT | 1 cut(s) | 334 |
| HpyCH4IV | ACGT | 2 cut(s) | 139, 493 |
| HpyCH4V | TGCA | 4 cut(s) | 23, 131, 167, 709 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 575 |
| HpyF3I | CTNAG | 4 cut(s) | 230, 409, 768, 858 |
| HpySE526I | ACGT | 2 cut(s) | 139, 493 |
| Hsp92II | CATG | 8 cut(s) | 164, 171, 313, 364, 574, 592, 653, 851 |
| Ksp22I | TGATCA | 1 cut(s) | 427 |
| Kzo9I | GATC | 3 cut(s) | 427, 562, 721 |
| LmnI | GCTCC | 2 cut(s) | 419, 458 |
| LweI | GCATC | 2 cut(s) | 10, 118 |
| MaeI | CTAG | 2 cut(s) | 423, 801 |
| MaeII | ACGT | 2 cut(s) | 139, 493 |
| MaeIII | GTNAC | 4 cut(s) | 313, 713, 813, 824 |
| MalI | GATC | 3 cut(s) | 429, 564, 723 |
| MboI | GATC | 3 cut(s) | 427, 562, 721 |
| MboII | GAAGA | 4 cut(s) | 221, 458, 536, 788 |
| MfeI | CAATTG | 1 cut(s) | 699 |
| MhlI | GDGCHC | 1 cut(s) | 397 |
| MlsI | TGGCCA | 1 cut(s) | 578 |
| MluCI | AATT | 7 cut(s) | 54, 401, 540, 596, 642, 663, 699 |
| MluNI | TGGCCA | 1 cut(s) | 578 |
| MmeI | TCCRAC | 2 cut(s) | 186, 397 |
| MnlI | CCTC | 7 cut(s) | 168, 215, 406, 553, 607, 691, 814 |
| Mox20I | TGGCCA | 1 cut(s) | 578 |
| MscI | TGGCCA | 1 cut(s) | 578 |
| MseI | TTAA | 5 cut(s) | 189, 270, 336, 519, 600 |
| MslI | CAYNNNNRTG | 3 cut(s) | 41, 770, 852 |
| Msp20I | TGGCCA | 1 cut(s) | 578 |
| MspI | CCGG | 3 cut(s) | 105, 236, 303 |
| MspR9I | CCNGG | 3 cut(s) | 106, 319, 658 |
| MunI | CAATTG | 1 cut(s) | 699 |
| MvaI | CCWGG | 2 cut(s) | 319, 658 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 575 |
| NciI | CCSGG | 1 cut(s) | 106 |
| NcoI | CCATGG | 2 cut(s) | 309, 570 |
| NdeII | GATC | 3 cut(s) | 427, 562, 721 |
| NlaIII | CATG | 8 cut(s) | 164, 171, 313, 364, 574, 592, 653, 851 |
| NlaIV | GGNNCC | 1 cut(s) | 307 |
| NmuCI | GTSAC | 3 cut(s) | 313, 713, 824 |
| NspI | RCATGY | 1 cut(s) | 653 |
| PagI | TCATGA | 1 cut(s) | 360 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 730 |
| PinAI | ACCGGT | 1 cut(s) | 235 |
| PshAI | GACNNNNGTC | 1 cut(s) | 142 |
| PshBI | ATTAAT | 1 cut(s) | 270 |
| Psp124BI | GAGCTC | 1 cut(s) | 397 |
| Psp6I | CCWGG | 2 cut(s) | 317, 656 |
| PspEI | GGTNACC | 1 cut(s) | 313 |
| PspGI | CCWGG | 2 cut(s) | 317, 656 |
| PspN4I | GGNNCC | 1 cut(s) | 307 |
| PspPI | GGNCC | 1 cut(s) | 305 |
| PstNI | CAGNNNCTG | 1 cut(s) | 292 |
| RsaI | GTAC | 3 cut(s) | 331, 654, 764 |
| RsaNI | GTAC | 3 cut(s) | 330, 653, 763 |
| RseI | CAYNNNNRTG | 3 cut(s) | 41, 770, 852 |
| SacI | GAGCTC | 1 cut(s) | 397 |
| SaqAI | TTAA | 5 cut(s) | 189, 270, 336, 519, 600 |
| Sau3AI | GATC | 3 cut(s) | 427, 562, 721 |
| Sau96I | GGNCC | 1 cut(s) | 305 |
| ScrFI | CCNGG | 3 cut(s) | 106, 319, 658 |
| SduI | GDGCHC | 1 cut(s) | 397 |
| SfaNI | GCATC | 2 cut(s) | 10, 118 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 41, 770, 852 |
| Sse9I | AATT | 7 cut(s) | 54, 401, 540, 596, 642, 663, 699 |
| SsiI | CCGC | 2 cut(s) | 611, 865 |
| SspMI | CTAG | 2 cut(s) | 423, 801 |
| SstI | GAGCTC | 1 cut(s) | 397 |
| StyD4I | CCNGG | 3 cut(s) | 104, 317, 656 |
| StyI | CCWWGG | 2 cut(s) | 309, 570 |
| TaaI | ACNGT | 1 cut(s) | 334 |
| TaiI | ACGT | 2 cut(s) | 142, 496 |
| TaqI | TCGA | 2 cut(s) | 504, 724 |
| TasI | AATT | 7 cut(s) | 54, 401, 540, 596, 642, 663, 699 |
| TatI | WGTACW | 1 cut(s) | 762 |
| Tru1I | TTAA | 5 cut(s) | 189, 270, 336, 519, 600 |
| Tru9I | TTAA | 5 cut(s) | 189, 270, 336, 519, 600 |
| TscAI | CASTG | 1 cut(s) | 772 |
| TseFI | GTSAC | 3 cut(s) | 313, 713, 824 |
| Tsp45I | GTSAC | 3 cut(s) | 313, 713, 824 |
| TspDTI | ATGAA | 5 cut(s) | 25, 349, 354, 377, 384 |
| TspRI | CASTG | 1 cut(s) | 772 |
| VspI | ATTAAT | 1 cut(s) | 270 |
| XapI | RAATTY | 2 cut(s) | 401, 596 |
| XceI | RCATGY | 1 cut(s) | 653 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 586 |
| XspI | CTAG | 2 cut(s) | 423, 801 |