ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 342 |
| AclWI | GGATC | 1 cut(s) | 310 |
| AfaI | GTAC | 1 cut(s) | 84 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 204, 245, 284, 325 |
| AgsI | TTSAA | 3 cut(s) | 164, 218, 475 |
| AhlI | ACTAGT | 1 cut(s) | 554 |
| AjnI | CCWGG | 2 cut(s) | 32, 429 |
| AluBI | AGCT | 3 cut(s) | 71, 388, 458 |
| AluI | AGCT | 3 cut(s) | 71, 388, 458 |
| Alw26I | GTCTC | 1 cut(s) | 502 |
| AlwI | GGATC | 1 cut(s) | 310 |
| Ama87I | CYCGRG | 1 cut(s) | 111 |
| AoxI | GGCC | 1 cut(s) | 179 |
| AseI | ATTAAT | 1 cut(s) | 492 |
| AsuC2I | CCSGG | 1 cut(s) | 202 |
| AsuHPI | GGTGA | 4 cut(s) | 22, 299, 419, 554 |
| AvaI | CYCGRG | 1 cut(s) | 111 |
| AxyI | CCTNAGG | 1 cut(s) | 183 |
| BccI | CCATC | 1 cut(s) | 327 |
| BceAI | ACGGC | 1 cut(s) | 438 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 515, 549 |
| BciT130I | CCWGG | 2 cut(s) | 34, 431 |
| BciVI | GTATCC | 1 cut(s) | 111 |
| BcnI | CCSGG | 1 cut(s) | 202 |
| BcoDI | GTCTC | 1 cut(s) | 502 |
| BcuI | ACTAGT | 1 cut(s) | 554 |
| BfaI | CTAG | 1 cut(s) | 555 |
| BfuAI | ACCTGC | 1 cut(s) | 342 |
| BfuI | GTATCC | 1 cut(s) | 111 |
| BglII | AGATCT | 1 cut(s) | 137 |
| Bme1390I | CCNGG | 3 cut(s) | 34, 202, 431 |
| BmeT110I | CYCGRG | 1 cut(s) | 111 |
| BmiI | GGNNCC | 1 cut(s) | 22 |
| BmrFI | CCNGG | 3 cut(s) | 34, 202, 431 |
| BoxI | GACNNNNGTC | 1 cut(s) | 147 |
| BpmI | CTGGAG | 2 cut(s) | 502, 526 |
| BpuMI | CCSGG | 1 cut(s) | 202 |
| Bsa29I | ATCGAT | 1 cut(s) | 43 |
| BsaJI | CCNNGG | 1 cut(s) | 33 |
| BsaWI | WCCGGW | 1 cut(s) | 546 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 204, 245, 284, 325 |
| Bse1I | ACTGG | 2 cut(s) | 289, 509 |
| Bse21I | CCTNAGG | 1 cut(s) | 183 |
| Bse3DI | GCAATG | 1 cut(s) | 533 |
| BseBI | CCWGG | 2 cut(s) | 34, 431 |
| BseCI | ATCGAT | 1 cut(s) | 43 |
| BseDI | CCNNGG | 1 cut(s) | 33 |
| BseGI | GGATG | 1 cut(s) | 276 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 204, 245, 284, 325 |
| BseMI | GCAATG | 1 cut(s) | 533 |
| BseMII | CTCAG | 3 cut(s) | 122, 165, 314 |
| BseNI | ACTGG | 2 cut(s) | 289, 509 |
| BshFI | GGCC | 1 cut(s) | 181 |
| BshVI | ATCGAT | 1 cut(s) | 43 |
| BsiHKCI | CYCGRG | 1 cut(s) | 111 |
| BsiSI | CCGG | 2 cut(s) | 202, 547 |
| BslFI | GGGAC | 2 cut(s) | 135, 201 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 204, 245, 284, 325 |
| BsmAI | GTCTC | 1 cut(s) | 502 |
| BsmFI | GGGAC | 2 cut(s) | 135, 201 |
| BsnI | GGCC | 1 cut(s) | 181 |
| BsoBI | CYCGRG | 1 cut(s) | 111 |
| Bsp1407I | TGTACA | 1 cut(s) | 82 |
| Bsp143I | GATC | 2 cut(s) | 137, 315 |
| BspANI | GGCC | 1 cut(s) | 181 |
| BspCNI | CTCAG | 3 cut(s) | 123, 166, 313 |
| BspDI | ATCGAT | 1 cut(s) | 43 |
| BspLI | GGNNCC | 1 cut(s) | 22 |
| BspMI | ACCTGC | 1 cut(s) | 342 |
| BspPI | GGATC | 1 cut(s) | 310 |
| BsrDI | GCAATG | 1 cut(s) | 533 |
| BsrGI | TGTACA | 1 cut(s) | 82 |
| BsrI | ACTGG | 2 cut(s) | 289, 509 |
| BssECI | CCNNGG | 1 cut(s) | 33 |
| BssMI | GATC | 2 cut(s) | 137, 315 |
| Bst2UI | CCWGG | 2 cut(s) | 34, 431 |
| BstAUI | TGTACA | 1 cut(s) | 82 |
| BstDEI | CTNAG | 4 cut(s) | 131, 174, 183, 300 |
| BstEII | GGTNACC | 2 cut(s) | 329, 542 |
| BstF5I | GGATG | 1 cut(s) | 276 |
| BstKTI | GATC | 2 cut(s) | 140, 318 |
| BstMAI | GTCTC | 1 cut(s) | 502 |
| BstMBI | GATC | 2 cut(s) | 137, 315 |
| BstNI | CCWGG | 2 cut(s) | 34, 431 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 147 |
| BstPI | GGTNACC | 2 cut(s) | 329, 542 |
| BstSCI | CCNGG | 3 cut(s) | 32, 200, 429 |
| BstX2I | RGATCY | 2 cut(s) | 137, 315 |
| BstYI | RGATCY | 2 cut(s) | 137, 315 |
| Bsu15I | ATCGAT | 1 cut(s) | 43 |
| Bsu36I | CCTNAGG | 1 cut(s) | 183 |
| BsuI | GTATCC | 1 cut(s) | 111 |
| BsuRI | GGCC | 1 cut(s) | 181 |
| BsuTUI | ATCGAT | 1 cut(s) | 43 |
| BtsCI | GGATG | 1 cut(s) | 276 |
| BveI | ACCTGC | 1 cut(s) | 342 |
| ClaI | ATCGAT | 1 cut(s) | 43 |
| CseI | GACGC | 1 cut(s) | 201 |
| Csp6I | GTAC | 1 cut(s) | 83 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 224, 259 |
| CviJI | RGCY | 9 cut(s) | 71, 181, 229, 267, 388, 425, 458, 532, 576 |
| CviKI_1 | RGCY | 9 cut(s) | 71, 181, 229, 267, 388, 425, 458, 532, 576 |
| CviQI | GTAC | 1 cut(s) | 83 |
| DdeI | CTNAG | 4 cut(s) | 131, 174, 183, 300 |
| DpnI | GATC | 2 cut(s) | 139, 317 |
| DpnII | GATC | 2 cut(s) | 137, 315 |
| Eco147I | AGGCCT | 1 cut(s) | 181 |
| Eco81I | CCTNAGG | 1 cut(s) | 183 |
| Eco88I | CYCGRG | 1 cut(s) | 111 |
| Eco91I | GGTNACC | 2 cut(s) | 329, 542 |
| EcoO65I | GGTNACC | 2 cut(s) | 329, 542 |
| EcoRII | CCWGG | 2 cut(s) | 32, 429 |
| FaiI | YATR | 3 cut(s) | 8, 48, 296 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 45, 77 |
| FaqI | GGGAC | 2 cut(s) | 135, 201 |
| FokI | GGATG | 1 cut(s) | 283 |
| FspBI | CTAG | 1 cut(s) | 555 |
| GsuI | CTGGAG | 2 cut(s) | 502, 526 |
| HaeIII | GGCC | 1 cut(s) | 181 |
| HapII | CCGG | 2 cut(s) | 202, 547 |
| HgaI | GACGC | 1 cut(s) | 201 |
| HinfI | GANTC | 5 cut(s) | 12, 27, 290, 298, 434 |
| HpaII | CCGG | 2 cut(s) | 202, 547 |
| HphI | GGTGA | 4 cut(s) | 22, 299, 419, 554 |
| Hpy188I | TCNGA | 5 cut(s) | 78, 132, 142, 312, 396 |
| Hpy188III | TCNNGA | 6 cut(s) | 24, 111, 173, 341, 519, 536 |
| Hpy99I | CGWCG | 1 cut(s) | 195 |
| HpyAV | CCTTC | 3 cut(s) | 288, 347, 533 |
| HpyCH4IV | ACGT | 1 cut(s) | 370 |
| HpyCH4V | TGCA | 1 cut(s) | 526 |
| HpyF3I | CTNAG | 4 cut(s) | 131, 174, 183, 300 |
| HpySE526I | ACGT | 1 cut(s) | 370 |
| Kzo9I | GATC | 2 cut(s) | 137, 315 |
| LmnI | GCTCC | 1 cut(s) | 521 |
| MaeI | CTAG | 1 cut(s) | 555 |
| MaeII | ACGT | 1 cut(s) | 370 |
| MaeIII | GTNAC | 2 cut(s) | 329, 542 |
| MalI | GATC | 2 cut(s) | 139, 317 |
| MboI | GATC | 2 cut(s) | 137, 315 |
| MboII | GAAGA | 3 cut(s) | 230, 271, 325 |
| MflI | RGATCY | 2 cut(s) | 137, 315 |
| MluCI | AATT | 3 cut(s) | 95, 401, 465 |
| MlyI | GAGTC | 1 cut(s) | 292 |
| MmeI | TCCRAC | 1 cut(s) | 290 |
| MnlI | CCTC | 3 cut(s) | 138, 171, 198 |
| MseI | TTAA | 1 cut(s) | 492 |
| MspI | CCGG | 2 cut(s) | 202, 547 |
| MspR9I | CCNGG | 3 cut(s) | 34, 202, 431 |
| MvaI | CCWGG | 2 cut(s) | 34, 431 |
| NciI | CCSGG | 1 cut(s) | 202 |
| NdeII | GATC | 2 cut(s) | 137, 315 |
| NlaIV | GGNNCC | 1 cut(s) | 22 |
| NmuCI | GTSAC | 1 cut(s) | 542 |
| PceI | AGGCCT | 1 cut(s) | 181 |
| PfeI | GAWTC | 4 cut(s) | 12, 27, 290, 434 |
| PleI | GAGTC | 1 cut(s) | 292 |
| PpsI | GAGTC | 1 cut(s) | 292 |
| PshAI | GACNNNNGTC | 1 cut(s) | 147 |
| PshBI | ATTAAT | 1 cut(s) | 492 |
| Psp6I | CCWGG | 2 cut(s) | 32, 429 |
| PspEI | GGTNACC | 2 cut(s) | 329, 542 |
| PspGI | CCWGG | 2 cut(s) | 32, 429 |
| PspN4I | GGNNCC | 1 cut(s) | 22 |
| PsuI | RGATCY | 2 cut(s) | 137, 315 |
| RsaI | GTAC | 1 cut(s) | 84 |
| RsaNI | GTAC | 1 cut(s) | 83 |
| SaqAI | TTAA | 1 cut(s) | 492 |
| Sau3AI | GATC | 2 cut(s) | 137, 315 |
| SchI | GAGTC | 1 cut(s) | 292 |
| ScrFI | CCNGG | 3 cut(s) | 34, 202, 431 |
| SpeI | ACTAGT | 1 cut(s) | 554 |
| Sse9I | AATT | 3 cut(s) | 95, 401, 465 |
| SseBI | AGGCCT | 1 cut(s) | 181 |
| SspMI | CTAG | 1 cut(s) | 555 |
| StuI | AGGCCT | 1 cut(s) | 181 |
| StyD4I | CCNGG | 3 cut(s) | 32, 200, 429 |
| TaiI | ACGT | 1 cut(s) | 373 |
| TaqI | TCGA | 1 cut(s) | 43 |
| TasI | AATT | 3 cut(s) | 95, 401, 465 |
| TatI | WGTACW | 1 cut(s) | 82 |
| TfiI | GAWTC | 4 cut(s) | 12, 27, 290, 434 |
| Tru1I | TTAA | 1 cut(s) | 492 |
| Tru9I | TTAA | 1 cut(s) | 492 |
| TseFI | GTSAC | 1 cut(s) | 542 |
| Tsp45I | GTSAC | 1 cut(s) | 542 |
| TspDTI | ATGAA | 5 cut(s) | 366, 398, 431, 492, 510 |
| VspI | ATTAAT | 1 cut(s) | 492 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 242 |
| XspI | CTAG | 1 cut(s) | 555 |