Zinc knuckle
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 170 |
| AccB1I | GGYRCC | 1 cut(s) | 501 |
| AciI | CCGC | 1 cut(s) | 446 |
| AclWI | GGATC | 1 cut(s) | 228 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 311 |
| AfaI | GTAC | 1 cut(s) | 261 |
| AfeI | AGCGCT | 1 cut(s) | 477 |
| AgsI | TTSAA | 4 cut(s) | 247, 419, 428, 517 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AleI | CACNNNNGTG | 2 cut(s) | 158, 507 |
| AluBI | AGCT | 2 cut(s) | 96, 490 |
| AluI | AGCT | 2 cut(s) | 96, 490 |
| Alw26I | GTCTC | 2 cut(s) | 56, 565 |
| AlwI | GGATC | 1 cut(s) | 228 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 130, 498 |
| Aor51HI | AGCGCT | 1 cut(s) | 477 |
| AoxI | GGCC | 3 cut(s) | 3, 127, 281 |
| ApeKI | GCWGC | 3 cut(s) | 171, 299, 577 |
| ApoI | RAATTY | 1 cut(s) | 311 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 338, 370 |
| AspA2I | CCTAGG | 1 cut(s) | 287 |
| AspLEI | GCGC | 2 cut(s) | 171, 478 |
| AspS9I | GGNCC | 3 cut(s) | 127, 281, 586 |
| AsuHPI | GGTGA | 1 cut(s) | 61 |
| AvaII | GGWCC | 1 cut(s) | 586 |
| AvrII | CCTAGG | 1 cut(s) | 287 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanI | GGYRCC | 1 cut(s) | 501 |
| BanII | GRGCYC | 1 cut(s) | 295 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 243, 275 |
| BbsI | GAAGAC | 1 cut(s) | 120 |
| BbvI | GCAGC | 3 cut(s) | 183, 311, 589 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 2 cut(s) | 56, 565 |
| BfaI | CTAG | 2 cut(s) | 41, 288 |
| BfoI | RGCGCY | 1 cut(s) | 479 |
| BisI | GCNGC | 3 cut(s) | 172, 300, 578 |
| BlnI | CCTAGG | 1 cut(s) | 287 |
| BlsI | GCNGC | 3 cut(s) | 173, 301, 579 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 1 cut(s) | 586 |
| BmgT120I | GGNCC | 3 cut(s) | 127, 281, 586 |
| BmiI | GGNNCC | 2 cut(s) | 443, 503 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BpiI | GAAGAC | 1 cut(s) | 120 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 268, 300 |
| BpuEI | CTTGAG | 1 cut(s) | 470 |
| BsaAI | YACGTR | 1 cut(s) | 263 |
| BsaBI | GATNNNNATC | 1 cut(s) | 539 |
| BsaJI | CCNNGG | 1 cut(s) | 287 |
| Bse1I | ACTGG | 3 cut(s) | 217, 503, 589 |
| Bse3DI | GCAATG | 1 cut(s) | 309 |
| Bse8I | GATNNNNATC | 1 cut(s) | 539 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseDI | CCNNGG | 1 cut(s) | 287 |
| BseJI | GATNNNNATC | 1 cut(s) | 539 |
| BseMI | GCAATG | 1 cut(s) | 309 |
| BseMII | CTCAG | 1 cut(s) | 505 |
| BseNI | ACTGG | 3 cut(s) | 217, 503, 589 |
| BseXI | GCAGC | 3 cut(s) | 183, 311, 589 |
| BshFI | GGCC | 3 cut(s) | 5, 129, 283 |
| BshNI | GGYRCC | 1 cut(s) | 501 |
| BslFI | GGGAC | 2 cut(s) | 89, 254 |
| BsmAI | GTCTC | 2 cut(s) | 56, 565 |
| BsmFI | GGGAC | 2 cut(s) | 89, 254 |
| BsnI | GGCC | 3 cut(s) | 5, 129, 283 |
| Bsp1286I | GDGCHC | 1 cut(s) | 295 |
| Bsp143I | GATC | 2 cut(s) | 220, 406 |
| BspACI | CCGC | 1 cut(s) | 446 |
| BspANI | GGCC | 3 cut(s) | 5, 129, 283 |
| BspCNI | CTCAG | 1 cut(s) | 504 |
| BspLI | GGNNCC | 2 cut(s) | 443, 503 |
| BspPI | GGATC | 1 cut(s) | 228 |
| BspT107I | GGYRCC | 1 cut(s) | 501 |
| BsrDI | GCAATG | 1 cut(s) | 309 |
| BsrI | ACTGG | 3 cut(s) | 217, 503, 589 |
| BssECI | CCNNGG | 1 cut(s) | 287 |
| BssMI | GATC | 2 cut(s) | 220, 406 |
| BssT1I | CCWWGG | 1 cut(s) | 287 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 2 cut(s) | 424, 506 |
| BstBAI | YACGTR | 1 cut(s) | 263 |
| BstDEI | CTNAG | 2 cut(s) | 403, 491 |
| BstH2I | RGCGCY | 1 cut(s) | 479 |
| BstHHI | GCGC | 2 cut(s) | 171, 478 |
| BstKTI | GATC | 2 cut(s) | 223, 409 |
| BstMAI | GTCTC | 2 cut(s) | 56, 565 |
| BstMBI | GATC | 2 cut(s) | 220, 406 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 299, 351, 360 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSNI | TACGTA | 1 cut(s) | 263 |
| BstV1I | GCAGC | 3 cut(s) | 183, 311, 589 |
| BstV2I | GAAGAC | 1 cut(s) | 120 |
| BstX2I | RGATCY | 1 cut(s) | 220 |
| BstYI | RGATCY | 1 cut(s) | 220 |
| BsuRI | GGCC | 3 cut(s) | 5, 129, 283 |
| BtsIMutI | CAGTG | 1 cut(s) | 499 |
| CaiI | CAGNNNCTG | 2 cut(s) | 130, 498 |
| CfoI | GCGC | 2 cut(s) | 171, 478 |
| Cfr13I | GGNCC | 3 cut(s) | 127, 281, 586 |
| Csp6I | GTAC | 1 cut(s) | 260 |
| CviAII | CATG | 4 cut(s) | 158, 325, 349, 375 |
| CviQI | GTAC | 1 cut(s) | 260 |
| DdeI | CTNAG | 2 cut(s) | 403, 491 |
| DpnI | GATC | 2 cut(s) | 222, 408 |
| DpnII | GATC | 2 cut(s) | 220, 406 |
| DraI | TTTAAA | 1 cut(s) | 88 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eco105I | TACGTA | 1 cut(s) | 263 |
| Eco130I | CCWWGG | 1 cut(s) | 287 |
| Eco24I | GRGCYC | 1 cut(s) | 295 |
| Eco47I | GGWCC | 1 cut(s) | 586 |
| Eco47III | AGCGCT | 1 cut(s) | 477 |
| EcoO109I | RGGNCCY | 2 cut(s) | 127, 281 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoT14I | CCWWGG | 1 cut(s) | 287 |
| EcoT38I | GRGCYC | 1 cut(s) | 295 |
| ErhI | CCWWGG | 1 cut(s) | 287 |
| FaeI | CATG | 4 cut(s) | 161, 328, 352, 378 |
| FaqI | GGGAC | 2 cut(s) | 89, 254 |
| FatI | CATG | 4 cut(s) | 157, 324, 348, 374 |
| FauI | CCCGC | 1 cut(s) | 453 |
| Fnu4HI | GCNGC | 3 cut(s) | 172, 300, 578 |
| FriOI | GRGCYC | 1 cut(s) | 295 |
| Fsp4HI | GCNGC | 3 cut(s) | 172, 300, 578 |
| FspBI | CTAG | 2 cut(s) | 41, 288 |
| FspI | TGCGCA | 1 cut(s) | 170 |
| GlaI | GCGC | 2 cut(s) | 170, 477 |
| GluI | GCNGC | 3 cut(s) | 172, 300, 578 |
| HaeII | RGCGCY | 1 cut(s) | 479 |
| HaeIII | GGCC | 3 cut(s) | 5, 129, 283 |
| HhaI | GCGC | 2 cut(s) | 171, 478 |
| Hin1II | CATG | 4 cut(s) | 161, 328, 352, 378 |
| Hin6I | GCGC | 2 cut(s) | 169, 476 |
| HinP1I | GCGC | 2 cut(s) | 169, 476 |
| HinfI | GANTC | 3 cut(s) | 328, 483, 540 |
| HphI | GGTGA | 1 cut(s) | 61 |
| Hpy188I | TCNGA | 1 cut(s) | 34 |
| Hpy188III | TCNNGA | 2 cut(s) | 276, 509 |
| Hpy99I | CGWCG | 1 cut(s) | 510 |
| HpyCH4III | ACNGT | 2 cut(s) | 424, 506 |
| HpyCH4IV | ACGT | 1 cut(s) | 262 |
| HpyCH4V | TGCA | 1 cut(s) | 299 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 299, 351, 360 |
| HpyF3I | CTNAG | 2 cut(s) | 403, 491 |
| HpySE526I | ACGT | 1 cut(s) | 262 |
| Hsp92II | CATG | 4 cut(s) | 161, 328, 352, 378 |
| HspAI | GCGC | 2 cut(s) | 169, 476 |
| Kzo9I | GATC | 2 cut(s) | 220, 406 |
| LpnPI | CCDG | 8 cut(s) | 110, 116, 143, 198, 424, 484, 533, 602 |
| Lsp1109I | GCAGC | 3 cut(s) | 183, 311, 589 |
| MaeI | CTAG | 2 cut(s) | 41, 288 |
| MaeII | ACGT | 1 cut(s) | 262 |
| MaeIII | GTNAC | 1 cut(s) | 494 |
| MalI | GATC | 2 cut(s) | 222, 408 |
| MboI | GATC | 2 cut(s) | 220, 406 |
| MboII | GAAGA | 3 cut(s) | 61, 125, 330 |
| MflI | RGATCY | 1 cut(s) | 220 |
| MhlI | GDGCHC | 1 cut(s) | 295 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 4 cut(s) | 189, 311, 428, 456 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 2 cut(s) | 322, 477 |
| MnlI | CCTC | 5 cut(s) | 130, 193, 272, 294, 426 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 1 cut(s) | 87 |
| MslI | CAYNNNNRTG | 4 cut(s) | 74, 158, 162, 507 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 299, 351, 360 |
| NdeII | GATC | 2 cut(s) | 220, 406 |
| NlaIII | CATG | 4 cut(s) | 161, 328, 352, 378 |
| NlaIV | GGNNCC | 2 cut(s) | 443, 503 |
| NmuCI | GTSAC | 1 cut(s) | 494 |
| NsbI | TGCGCA | 1 cut(s) | 170 |
| OliI | CACNNNNGTG | 2 cut(s) | 158, 507 |
| PfeI | GAWTC | 1 cut(s) | 540 |
| PkrI | GCNGC | 3 cut(s) | 173, 301, 579 |
| PleI | GAGTC | 2 cut(s) | 322, 477 |
| PpsI | GAGTC | 2 cut(s) | 322, 477 |
| Ppu21I | YACGTR | 1 cut(s) | 263 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 2 cut(s) | 443, 503 |
| PspPI | GGNCC | 3 cut(s) | 127, 281, 586 |
| PstNI | CAGNNNCTG | 2 cut(s) | 130, 498 |
| PsuI | RGATCY | 1 cut(s) | 220 |
| RsaI | GTAC | 1 cut(s) | 261 |
| RsaNI | GTAC | 1 cut(s) | 260 |
| RseI | CAYNNNNRTG | 4 cut(s) | 74, 158, 162, 507 |
| SaqAI | TTAA | 1 cut(s) | 87 |
| SatI | GCNGC | 3 cut(s) | 172, 300, 578 |
| Sau3AI | GATC | 2 cut(s) | 220, 406 |
| Sau96I | GGNCC | 3 cut(s) | 127, 281, 586 |
| SchI | GAGTC | 2 cut(s) | 322, 477 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 1 cut(s) | 295 |
| SetI | ASST | 7 cut(s) | 16, 98, 122, 204, 265, 443, 492 |
| SinI | GGWCC | 1 cut(s) | 586 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 74, 158, 162, 507 |
| SmlI | CTYRAG | 1 cut(s) | 485 |
| SmoI | CTYRAG | 1 cut(s) | 485 |
| SnaBI | TACGTA | 1 cut(s) | 263 |
| Sse9I | AATT | 4 cut(s) | 189, 311, 428, 456 |
| SsiI | CCGC | 1 cut(s) | 446 |
| SspMI | CTAG | 2 cut(s) | 41, 288 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| StyI | CCWWGG | 1 cut(s) | 287 |
| TaaI | ACNGT | 2 cut(s) | 424, 506 |
| TaiI | ACGT | 1 cut(s) | 265 |
| TaqI | TCGA | 1 cut(s) | 275 |
| TaqII | GACCGA | 1 cut(s) | 574 |
| TasI | AATT | 4 cut(s) | 189, 311, 428, 456 |
| TfiI | GAWTC | 1 cut(s) | 540 |
| Tru1I | TTAA | 1 cut(s) | 87 |
| Tru9I | TTAA | 1 cut(s) | 87 |
| TscAI | CASTG | 1 cut(s) | 499 |
| TseFI | GTSAC | 1 cut(s) | 494 |
| TseI | GCWGC | 3 cut(s) | 171, 299, 577 |
| Tsp45I | GTSAC | 1 cut(s) | 494 |
| TspDTI | ATGAA | 2 cut(s) | 126, 264 |
| TspRI | CASTG | 1 cut(s) | 499 |
| VpaK11BI | GGWCC | 1 cut(s) | 586 |
| XapI | RAATTY | 1 cut(s) | 311 |
| XmaJI | CCTAGG | 1 cut(s) | 287 |
| XspI | CTAG | 2 cut(s) | 41, 288 |