ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 5 - 140 | 2.3e-12 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 398 |
| AccB1I | GGYRCC | 1 cut(s) | 1341 |
| AccBSI | CCGCTC | 1 cut(s) | 1246 |
| AccI | GTMKAC | 2 cut(s) | 1111, 1324 |
| AciI | CCGC | 4 cut(s) | 170, 677, 1084, 1246 |
| AclWI | GGATC | 2 cut(s) | 886, 953 |
| AcsI | RAATTY | 7 cut(s) | 5, 342, 471, 611, 690, 887, 1288 |
| AcyI | GRCGYC | 1 cut(s) | 1342 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 732, 968 |
| AflIII | ACRYGT | 2 cut(s) | 829, 1188 |
| AgsI | TTSAA | 9 cut(s) | 415, 527, 611, 689, 794, 908, 1007, 1198, 1349 |
| AjiI | CACGTC | 1 cut(s) | 50 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 816, 848 |
| AluBI | AGCT | 5 cut(s) | 332, 428, 897, 931, 1103 |
| AluI | AGCT | 5 cut(s) | 332, 428, 897, 931, 1103 |
| Alw26I | GTCTC | 5 cut(s) | 31, 730, 929, 999, 1030 |
| AlwI | GGATC | 2 cut(s) | 886, 953 |
| Ama87I | CYCGRG | 1 cut(s) | 1149 |
| AoxI | GGCC | 2 cut(s) | 505, 939 |
| ApeKI | GCWGC | 3 cut(s) | 82, 716, 818 |
| ApoI | RAATTY | 7 cut(s) | 5, 342, 471, 611, 690, 887, 1288 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 346 |
| AspLEI | GCGC | 1 cut(s) | 1344 |
| AspS9I | GGNCC | 3 cut(s) | 54, 723, 1050 |
| AsuC2I | CCSGG | 2 cut(s) | 26, 44 |
| AsuHPI | GGTGA | 1 cut(s) | 419 |
| AsuII | TTCGAA | 2 cut(s) | 750, 1311 |
| AsuNHI | GCTAGC | 1 cut(s) | 424 |
| AvaI | CYCGRG | 1 cut(s) | 1149 |
| AvaII | GGWCC | 3 cut(s) | 54, 723, 1050 |
| AxyI | CCTNAGG | 1 cut(s) | 71 |
| BaeGI | GKGCMC | 2 cut(s) | 49, 1188 |
| BanI | GGYRCC | 1 cut(s) | 1341 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 262, 294 |
| BbsI | GAAGAC | 1 cut(s) | 832 |
| BbvI | GCAGC | 3 cut(s) | 94, 703, 805 |
| BccI | CCATC | 2 cut(s) | 706, 778 |
| BceAI | ACGGC | 1 cut(s) | 954 |
| BclI | TGATCA | 1 cut(s) | 667 |
| BcnI | CCSGG | 2 cut(s) | 26, 44 |
| BcoDI | GTCTC | 5 cut(s) | 31, 730, 929, 999, 1030 |
| BfaI | CTAG | 4 cut(s) | 425, 650, 989, 1357 |
| BfmI | CTRYAG | 2 cut(s) | 476, 819 |
| BfoI | RGCGCY | 1 cut(s) | 1345 |
| BisI | GCNGC | 3 cut(s) | 83, 717, 819 |
| BlsI | GCNGC | 3 cut(s) | 84, 718, 820 |
| Bme1390I | CCNGG | 2 cut(s) | 26, 44 |
| Bme18I | GGWCC | 3 cut(s) | 54, 723, 1050 |
| BmeT110I | CYCGRG | 1 cut(s) | 1149 |
| BmgBI | CACGTC | 1 cut(s) | 50 |
| BmgT120I | GGNCC | 3 cut(s) | 54, 723, 1050 |
| BmiI | GGNNCC | 1 cut(s) | 1343 |
| BmrFI | CCNGG | 2 cut(s) | 26, 44 |
| BmrI | ACTGGG | 1 cut(s) | 318 |
| BmsI | GCATC | 2 cut(s) | 818, 1242 |
| BmtI | GCTAGC | 1 cut(s) | 428 |
| BmuI | ACTGGG | 1 cut(s) | 318 |
| BpiI | GAAGAC | 1 cut(s) | 832 |
| BpmI | CTGGAG | 1 cut(s) | 953 |
| Bpu14I | TTCGAA | 2 cut(s) | 750, 1311 |
| BpuMI | CCSGG | 2 cut(s) | 26, 44 |
| BsaHI | GRCGYC | 1 cut(s) | 1342 |
| BsaJI | CCNNGG | 1 cut(s) | 25 |
| BsaWI | WCCGGW | 1 cut(s) | 961 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1016, 1046 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 732, 968 |
| Bse1I | ACTGG | 2 cut(s) | 313, 398 |
| Bse21I | CCTNAGG | 1 cut(s) | 71 |
| BseDI | CCNNGG | 1 cut(s) | 25 |
| BseGI | GGATG | 1 cut(s) | 717 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 732, 968 |
| BseMII | CTCAG | 2 cut(s) | 62, 1185 |
| BseNI | ACTGG | 2 cut(s) | 313, 398 |
| BseRI | GAGGAG | 4 cut(s) | 207, 449, 748, 1037 |
| BseSI | GKGCMC | 2 cut(s) | 49, 1188 |
| BseXI | GCAGC | 3 cut(s) | 94, 703, 805 |
| BsgI | GTGCAG | 1 cut(s) | 702 |
| Bsh1285I | CGRYCG | 1 cut(s) | 488 |
| BshFI | GGCC | 2 cut(s) | 507, 941 |
| BshNI | GGYRCC | 1 cut(s) | 1341 |
| BsiEI | CGRYCG | 1 cut(s) | 488 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1149 |
| BsiSI | CCGG | 4 cut(s) | 25, 43, 86, 962 |
| BslFI | GGGAC | 1 cut(s) | 480 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 732, 968 |
| BsmAI | GTCTC | 5 cut(s) | 31, 730, 929, 999, 1030 |
| BsmBI | CGTCTC | 2 cut(s) | 730, 929 |
| BsmFI | GGGAC | 1 cut(s) | 480 |
| BsmI | GAATGC | 1 cut(s) | 857 |
| BsnI | GGCC | 2 cut(s) | 507, 941 |
| BsoBI | CYCGRG | 1 cut(s) | 1149 |
| Bsp119I | TTCGAA | 2 cut(s) | 750, 1311 |
| Bsp1286I | GDGCHC | 2 cut(s) | 49, 1188 |
| Bsp143I | GATC | 7 cut(s) | 485, 589, 667, 878, 958, 1043, 1072 |
| BspACI | CCGC | 4 cut(s) | 170, 677, 1084, 1246 |
| BspANI | GGCC | 2 cut(s) | 507, 941 |
| BspCNI | CTCAG | 2 cut(s) | 63, 1184 |
| BspLI | GGNNCC | 1 cut(s) | 1343 |
| BspMAI | CTGCAG | 1 cut(s) | 823 |
| BspOI | GCTAGC | 1 cut(s) | 428 |
| BspPI | GGATC | 2 cut(s) | 886, 953 |
| BspT104I | TTCGAA | 2 cut(s) | 750, 1311 |
| BspT107I | GGYRCC | 1 cut(s) | 1341 |
| BsrBI | CCGCTC | 1 cut(s) | 1246 |
| BsrI | ACTGG | 2 cut(s) | 313, 398 |
| BssECI | CCNNGG | 1 cut(s) | 25 |
| BssMI | GATC | 7 cut(s) | 485, 589, 667, 878, 958, 1043, 1072 |
| BssNI | GRCGYC | 1 cut(s) | 1342 |
| Bst4CI | ACNGT | 9 cut(s) | 58, 269, 382, 480, 503, 723, 741, 1050, 1299 |
| Bst6I | CTCTTC | 2 cut(s) | 725, 747 |
| BstACI | GRCGYC | 1 cut(s) | 1342 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 815 |
| BstBI | TTCGAA | 2 cut(s) | 750, 1311 |
| BstC8I | GCNNGC | 2 cut(s) | 426, 929 |
| BstDEI | CTNAG | 2 cut(s) | 71, 1171 |
| BstEII | GGTNACC | 1 cut(s) | 320 |
| BstF5I | GGATG | 1 cut(s) | 717 |
| BstH2I | RGCGCY | 1 cut(s) | 1345 |
| BstHHI | GCGC | 1 cut(s) | 1344 |
| BstKTI | GATC | 7 cut(s) | 488, 592, 670, 881, 961, 1046, 1075 |
| BstMAI | GTCTC | 5 cut(s) | 31, 730, 929, 999, 1030 |
| BstMBI | GATC | 7 cut(s) | 485, 589, 667, 878, 958, 1043, 1072 |
| BstMCI | CGRYCG | 1 cut(s) | 488 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 214, 815 |
| BstNSI | RCATGY | 2 cut(s) | 833, 1192 |
| BstPI | GGTNACC | 1 cut(s) | 320 |
| BstSCI | CCNGG | 2 cut(s) | 24, 42 |
| BstSFI | CTRYAG | 2 cut(s) | 476, 819 |
| BstSLI | GKGCMC | 2 cut(s) | 49, 1188 |
| BstV1I | GCAGC | 3 cut(s) | 94, 703, 805 |
| BstV2I | GAAGAC | 1 cut(s) | 832 |
| BstX2I | RGATCY | 1 cut(s) | 878 |
| BstYI | RGATCY | 1 cut(s) | 878 |
| Bsu36I | CCTNAGG | 1 cut(s) | 71 |
| BsuRI | GGCC | 2 cut(s) | 507, 941 |
| BtrI | CACGTC | 1 cut(s) | 50 |
| BtsCI | GGATG | 1 cut(s) | 717 |
| BtsIMutI | CAGTG | 1 cut(s) | 387 |
| Cac8I | GCNNGC | 2 cut(s) | 426, 929 |
| CfoI | GCGC | 1 cut(s) | 1344 |
| Cfr13I | GGNCC | 3 cut(s) | 54, 723, 1050 |
| CpoI | CGGWCCG | 1 cut(s) | 54 |
| CspI | CGGWCCG | 1 cut(s) | 54 |
| CviAII | CATG | 6 cut(s) | 103, 616, 830, 1094, 1189, 1240 |
| DdeI | CTNAG | 2 cut(s) | 71, 1171 |
| DinI | GGCGCC | 1 cut(s) | 1343 |
| DpnI | GATC | 7 cut(s) | 487, 591, 669, 880, 960, 1045, 1074 |
| DpnII | GATC | 7 cut(s) | 485, 589, 667, 878, 958, 1043, 1072 |
| DraI | TTTAAA | 1 cut(s) | 1335 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 398 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 398 |
| Eam1104I | CTCTTC | 2 cut(s) | 725, 747 |
| EarI | CTCTTC | 2 cut(s) | 725, 747 |
| Eco32I | GATATC | 1 cut(s) | 533 |
| Eco47I | GGWCC | 3 cut(s) | 54, 723, 1050 |
| Eco81I | CCTNAGG | 1 cut(s) | 71 |
| Eco88I | CYCGRG | 1 cut(s) | 1149 |
| Eco91I | GGTNACC | 1 cut(s) | 320 |
| EcoO65I | GGTNACC | 1 cut(s) | 320 |
| EcoRI | GAATTC | 2 cut(s) | 342, 611 |
| EcoRV | GATATC | 1 cut(s) | 533 |
| EgeI | GGCGCC | 1 cut(s) | 1343 |
| EheI | GGCGCC | 1 cut(s) | 1343 |
| Esp3I | CGTCTC | 2 cut(s) | 730, 929 |
| FaeI | CATG | 6 cut(s) | 106, 619, 833, 1097, 1192, 1243 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 520, 552, 570, 602 |
| FaqI | GGGAC | 1 cut(s) | 480 |
| FatI | CATG | 6 cut(s) | 102, 615, 829, 1093, 1188, 1239 |
| FauI | CCCGC | 1 cut(s) | 1091 |
| FbaI | TGATCA | 1 cut(s) | 667 |
| FblI | GTMKAC | 2 cut(s) | 1111, 1324 |
| Fnu4HI | GCNGC | 3 cut(s) | 83, 717, 819 |
| FokI | GGATG | 1 cut(s) | 724 |
| Fsp4HI | GCNGC | 3 cut(s) | 83, 717, 819 |
| FspBI | CTAG | 4 cut(s) | 425, 650, 989, 1357 |
| GlaI | GCGC | 1 cut(s) | 1343 |
| GluI | GCNGC | 3 cut(s) | 83, 717, 819 |
| GsuI | CTGGAG | 1 cut(s) | 953 |
| HaeII | RGCGCY | 1 cut(s) | 1345 |
| HaeIII | GGCC | 2 cut(s) | 507, 941 |
| HapII | CCGG | 4 cut(s) | 25, 43, 86, 962 |
| HhaI | GCGC | 1 cut(s) | 1344 |
| Hin1I | GRCGYC | 1 cut(s) | 1342 |
| Hin1II | CATG | 6 cut(s) | 106, 619, 833, 1097, 1192, 1243 |
| Hin6I | GCGC | 1 cut(s) | 1342 |
| HinP1I | GCGC | 1 cut(s) | 1342 |
| HincII | GTYRAC | 3 cut(s) | 385, 655, 765 |
| HindII | GTYRAC | 3 cut(s) | 385, 655, 765 |
| HindIII | AAGCTT | 2 cut(s) | 895, 1101 |
| HinfI | GANTC | 5 cut(s) | 39, 992, 1145, 1169, 1321 |
| HpaII | CCGG | 4 cut(s) | 25, 43, 86, 962 |
| HphI | GGTGA | 1 cut(s) | 419 |
| Hpy166II | GTNNAC | 9 cut(s) | 385, 655, 765, 976, 1053, 1112, 1168, 1218, 1325 |
| Hpy188I | TCNGA | 7 cut(s) | 54, 667, 914, 1077, 1174, 1210, 1287 |
| Hpy188III | TCNNGA | 2 cut(s) | 61, 836 |
| Hpy8I | GTNNAC | 9 cut(s) | 385, 655, 765, 976, 1053, 1112, 1168, 1218, 1325 |
| Hpy99I | CGWCG | 2 cut(s) | 54, 62 |
| HpyAV | CCTTC | 1 cut(s) | 1355 |
| HpyCH4III | ACNGT | 9 cut(s) | 58, 269, 382, 480, 503, 723, 741, 1050, 1299 |
| HpyCH4IV | ACGT | 2 cut(s) | 49, 978 |
| HpyCH4V | TGCA | 5 cut(s) | 719, 809, 821, 1063, 1303 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 214, 815 |
| HpyF3I | CTNAG | 2 cut(s) | 71, 1171 |
| HpySE526I | ACGT | 2 cut(s) | 49, 978 |
| Hsp92I | GRCGYC | 1 cut(s) | 1342 |
| Hsp92II | CATG | 6 cut(s) | 106, 619, 833, 1097, 1192, 1243 |
| HspAI | GCGC | 1 cut(s) | 1342 |
| KasI | GGCGCC | 1 cut(s) | 1341 |
| Ksp22I | TGATCA | 1 cut(s) | 667 |
| Kzo9I | GATC | 7 cut(s) | 485, 589, 667, 878, 958, 1043, 1072 |
| LmnI | GCTCC | 1 cut(s) | 1243 |
| Lsp1109I | GCAGC | 3 cut(s) | 94, 703, 805 |
| LweI | GCATC | 2 cut(s) | 818, 1242 |
| MaeI | CTAG | 4 cut(s) | 425, 650, 989, 1357 |
| MaeII | ACGT | 2 cut(s) | 49, 978 |
| MaeIII | GTNAC | 3 cut(s) | 274, 304, 320 |
| MalI | GATC | 7 cut(s) | 487, 591, 669, 880, 960, 1045, 1074 |
| MbiI | CCGCTC | 1 cut(s) | 1246 |
| MboI | GATC | 7 cut(s) | 485, 589, 667, 878, 958, 1043, 1072 |
| MfeI | CAATTG | 2 cut(s) | 13, 998 |
| MflI | RGATCY | 1 cut(s) | 878 |
| MhlI | GDGCHC | 2 cut(s) | 49, 1188 |
| Mly113I | GGCGCC | 1 cut(s) | 1342 |
| MlyI | GAGTC | 4 cut(s) | 33, 1001, 1163, 1330 |
| MmeI | TCCRAC | 3 cut(s) | 32, 937, 1298 |
| MroXI | GAANNNNTTC | 1 cut(s) | 346 |
| MseI | TTAA | 4 cut(s) | 152, 845, 1275, 1334 |
| MslI | CAYNNNNRTG | 2 cut(s) | 954, 1238 |
| MspI | CCGG | 4 cut(s) | 25, 43, 86, 962 |
| MspR9I | CCNGG | 2 cut(s) | 26, 44 |
| MunI | CAATTG | 2 cut(s) | 13, 998 |
| Mva1269I | GAATGC | 1 cut(s) | 857 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 214, 815 |
| NarI | GGCGCC | 1 cut(s) | 1342 |
| NciI | CCSGG | 2 cut(s) | 26, 44 |
| NdeII | GATC | 7 cut(s) | 485, 589, 667, 878, 958, 1043, 1072 |
| NheI | GCTAGC | 1 cut(s) | 424 |
| NlaIII | CATG | 6 cut(s) | 106, 619, 833, 1097, 1192, 1243 |
| NlaIV | GGNNCC | 1 cut(s) | 1343 |
| NspI | RCATGY | 2 cut(s) | 833, 1192 |
| NspV | TTCGAA | 2 cut(s) | 750, 1311 |
| PciI | ACATGT | 2 cut(s) | 829, 1188 |
| PctI | GAATGC | 1 cut(s) | 857 |
| PdmI | GAANNNNTTC | 1 cut(s) | 346 |
| PfeI | GAWTC | 1 cut(s) | 1145 |
| PkrI | GCNGC | 3 cut(s) | 84, 718, 820 |
| Ple19I | CGATCG | 1 cut(s) | 488 |
| PleI | GAGTC | 4 cut(s) | 33, 1000, 1163, 1329 |
| PluTI | GGCGCC | 1 cut(s) | 1345 |
| PpsI | GAGTC | 4 cut(s) | 33, 1000, 1163, 1329 |
| PscI | ACATGT | 2 cut(s) | 829, 1188 |
| PspEI | GGTNACC | 1 cut(s) | 320 |
| PspN4I | GGNNCC | 1 cut(s) | 1343 |
| PspPI | GGNCC | 3 cut(s) | 54, 723, 1050 |
| PstI | CTGCAG | 1 cut(s) | 823 |
| PsuI | RGATCY | 1 cut(s) | 878 |
| PvuI | CGATCG | 1 cut(s) | 488 |
| RseI | CAYNNNNRTG | 2 cut(s) | 954, 1238 |
| Rsr2I | CGGWCCG | 1 cut(s) | 54 |
| RsrII | CGGWCCG | 1 cut(s) | 54 |
| SaqAI | TTAA | 4 cut(s) | 152, 845, 1275, 1334 |
| SatI | GCNGC | 3 cut(s) | 83, 717, 819 |
| Sau3AI | GATC | 7 cut(s) | 485, 589, 667, 878, 958, 1043, 1072 |
| Sau96I | GGNCC | 3 cut(s) | 54, 723, 1050 |
| SchI | GAGTC | 4 cut(s) | 33, 1001, 1163, 1330 |
| ScrFI | CCNGG | 2 cut(s) | 26, 44 |
| SduI | GDGCHC | 2 cut(s) | 49, 1188 |
| SfaNI | GCATC | 2 cut(s) | 818, 1242 |
| SfcI | CTRYAG | 2 cut(s) | 476, 819 |
| SfoI | GGCGCC | 1 cut(s) | 1343 |
| SfuI | TTCGAA | 2 cut(s) | 750, 1311 |
| SinI | GGWCC | 3 cut(s) | 54, 723, 1050 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 954, 1238 |
| SsiI | CCGC | 4 cut(s) | 170, 677, 1084, 1246 |
| SspDI | GGCGCC | 1 cut(s) | 1341 |
| SspI | AATATT | 1 cut(s) | 607 |
| SspMI | CTAG | 4 cut(s) | 425, 650, 989, 1357 |
| StyD4I | CCNGG | 2 cut(s) | 24, 42 |
| TaaI | ACNGT | 9 cut(s) | 58, 269, 382, 480, 503, 723, 741, 1050, 1299 |
| TaiI | ACGT | 2 cut(s) | 52, 981 |
| TaqI | TCGA | 7 cut(s) | 60, 301, 340, 484, 750, 1236, 1311 |
| TfiI | GAWTC | 1 cut(s) | 1145 |
| Tru1I | TTAA | 4 cut(s) | 152, 845, 1275, 1334 |
| Tru9I | TTAA | 4 cut(s) | 152, 845, 1275, 1334 |
| TscAI | CASTG | 1 cut(s) | 394 |
| TseI | GCWGC | 3 cut(s) | 82, 716, 818 |
| TspDTI | ATGAA | 7 cut(s) | 17, 335, 579, 604, 714, 864, 1110 |
| TspRI | CASTG | 1 cut(s) | 394 |
| VpaK11BI | GGWCC | 3 cut(s) | 54, 723, 1050 |
| XapI | RAATTY | 7 cut(s) | 5, 342, 471, 611, 690, 887, 1288 |
| XceI | RCATGY | 2 cut(s) | 833, 1192 |
| XmiI | GTMKAC | 2 cut(s) | 1111, 1324 |
| XmnI | GAANNNNTTC | 1 cut(s) | 346 |
| XspI | CTAG | 4 cut(s) | 425, 650, 989, 1357 |