Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 4 cut(s) | 237, 319, 366, 651 |
| AciI | CCGC | 2 cut(s) | 139, 165 |
| AclWI | GGATC | 1 cut(s) | 201 |
| AcsI | RAATTY | 1 cut(s) | 261 |
| AdeI | CACNNNGTG | 1 cut(s) | 173 |
| AfaI | GTAC | 3 cut(s) | 75, 187, 435 |
| AfeI | AGCGCT | 1 cut(s) | 221 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 635 |
| AgsI | TTSAA | 4 cut(s) | 203, 428, 514, 653 |
| AjnI | CCWGG | 1 cut(s) | 118 |
| AluBI | AGCT | 2 cut(s) | 363, 423 |
| AluI | AGCT | 2 cut(s) | 363, 423 |
| Alw26I | GTCTC | 2 cut(s) | 353, 627 |
| AlwI | GGATC | 1 cut(s) | 201 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 497 |
| Aor51HI | AGCGCT | 1 cut(s) | 221 |
| AoxI | GGCC | 1 cut(s) | 289 |
| ApeKI | GCWGC | 3 cut(s) | 302, 305, 372 |
| ApoI | RAATTY | 1 cut(s) | 261 |
| AspLEI | GCGC | 2 cut(s) | 43, 222 |
| AspS9I | GGNCC | 2 cut(s) | 125, 290 |
| AsuHPI | GGTGA | 1 cut(s) | 78 |
| AsuII | TTCGAA | 1 cut(s) | 567 |
| AvaII | GGWCC | 1 cut(s) | 125 |
| BauI | CACGAG | 1 cut(s) | 297 |
| BbsI | GAAGAC | 2 cut(s) | 27, 537 |
| BbvI | GCAGC | 3 cut(s) | 289, 292, 359 |
| BciT130I | CCWGG | 1 cut(s) | 120 |
| BcoDI | GTCTC | 2 cut(s) | 353, 627 |
| BfaI | CTAG | 1 cut(s) | 147 |
| BfmI | CTRYAG | 1 cut(s) | 373 |
| BfoI | RGCGCY | 1 cut(s) | 223 |
| BfuAI | ACCTGC | 4 cut(s) | 237, 319, 366, 651 |
| BglII | AGATCT | 1 cut(s) | 666 |
| BisI | GCNGC | 4 cut(s) | 165, 303, 306, 373 |
| BlsI | GCNGC | 4 cut(s) | 166, 304, 307, 374 |
| Bme1390I | CCNGG | 1 cut(s) | 120 |
| Bme18I | GGWCC | 1 cut(s) | 125 |
| BmgT120I | GGNCC | 2 cut(s) | 125, 290 |
| BmiI | GGNNCC | 1 cut(s) | 408 |
| BmrFI | CCNGG | 1 cut(s) | 120 |
| BmsI | GCATC | 1 cut(s) | 584 |
| BpiI | GAAGAC | 2 cut(s) | 27, 537 |
| BpmI | CTGGAG | 3 cut(s) | 141, 267, 460 |
| Bpu14I | TTCGAA | 1 cut(s) | 567 |
| BsaAI | YACGTR | 1 cut(s) | 384 |
| BsaI | GGTCTC | 2 cut(s) | 353, 627 |
| BsaJI | CCNNGG | 2 cut(s) | 31, 233 |
| BsaWI | WCCGGW | 1 cut(s) | 635 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 463, 493, 531, 561 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 635 |
| Bse1I | ACTGG | 2 cut(s) | 443, 623 |
| BseBI | CCWGG | 1 cut(s) | 120 |
| BseDI | CCNNGG | 2 cut(s) | 31, 233 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 635 |
| BseMII | CTCAG | 1 cut(s) | 638 |
| BseNI | ACTGG | 2 cut(s) | 443, 623 |
| BseRI | GAGGAG | 2 cut(s) | 285, 602 |
| BseXI | GCAGC | 3 cut(s) | 289, 292, 359 |
| BsgI | GTGCAG | 1 cut(s) | 291 |
| BshFI | GGCC | 1 cut(s) | 291 |
| BsiSI | CCGG | 1 cut(s) | 636 |
| BsiWI | CGTACG | 1 cut(s) | 73 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 635 |
| BsmAI | GTCTC | 2 cut(s) | 353, 627 |
| BsmI | GAATGC | 2 cut(s) | 217, 450 |
| BsnI | GGCC | 1 cut(s) | 291 |
| Bso31I | GGTCTC | 2 cut(s) | 353, 627 |
| Bsp119I | TTCGAA | 1 cut(s) | 567 |
| Bsp143I | GATC | 3 cut(s) | 175, 193, 666 |
| Bsp19I | CCATGG | 1 cut(s) | 233 |
| BspACI | CCGC | 2 cut(s) | 139, 165 |
| BspANI | GGCC | 1 cut(s) | 291 |
| BspCNI | CTCAG | 1 cut(s) | 637 |
| BspLI | GGNNCC | 1 cut(s) | 408 |
| BspMAI | CTGCAG | 1 cut(s) | 377 |
| BspMI | ACCTGC | 4 cut(s) | 237, 319, 366, 651 |
| BspPI | GGATC | 1 cut(s) | 201 |
| BspT104I | TTCGAA | 1 cut(s) | 567 |
| BspTNI | GGTCTC | 2 cut(s) | 353, 627 |
| BsrI | ACTGG | 2 cut(s) | 443, 623 |
| BssECI | CCNNGG | 2 cut(s) | 31, 233 |
| BssMI | GATC | 3 cut(s) | 175, 193, 666 |
| BssSI | CACGAG | 1 cut(s) | 297 |
| BssT1I | CCWWGG | 2 cut(s) | 31, 233 |
| Bst2BI | CACGAG | 1 cut(s) | 297 |
| Bst2UI | CCWGG | 1 cut(s) | 120 |
| Bst4CI | ACNGT | 2 cut(s) | 321, 499 |
| BstBAI | YACGTR | 1 cut(s) | 384 |
| BstBI | TTCGAA | 1 cut(s) | 567 |
| BstC8I | GCNNGC | 1 cut(s) | 169 |
| BstDEI | CTNAG | 1 cut(s) | 624 |
| BstDSI | CCRYGG | 1 cut(s) | 233 |
| BstH2I | RGCGCY | 1 cut(s) | 223 |
| BstHHI | GCGC | 2 cut(s) | 43, 222 |
| BstKTI | GATC | 3 cut(s) | 178, 196, 669 |
| BstMAI | GTCTC | 2 cut(s) | 353, 627 |
| BstMBI | GATC | 3 cut(s) | 175, 193, 666 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 177, 314, 369 |
| BstNI | CCWGG | 1 cut(s) | 120 |
| BstSCI | CCNGG | 1 cut(s) | 118 |
| BstSFI | CTRYAG | 1 cut(s) | 373 |
| BstV1I | GCAGC | 3 cut(s) | 289, 292, 359 |
| BstV2I | GAAGAC | 2 cut(s) | 27, 537 |
| BstX2I | RGATCY | 2 cut(s) | 193, 666 |
| BstYI | RGATCY | 2 cut(s) | 193, 666 |
| BsuRI | GGCC | 1 cut(s) | 291 |
| BtgI | CCRYGG | 1 cut(s) | 233 |
| BtsI | GCAGTG | 2 cut(s) | 178, 672 |
| BtsIMutI | CAGTG | 5 cut(s) | 178, 436, 495, 616, 672 |
| BveI | ACCTGC | 4 cut(s) | 237, 319, 366, 651 |
| Cac8I | GCNNGC | 1 cut(s) | 169 |
| CaiI | CAGNNNCTG | 1 cut(s) | 497 |
| CfoI | GCGC | 2 cut(s) | 43, 222 |
| Cfr13I | GGNCC | 2 cut(s) | 125, 290 |
| CseI | GACGC | 1 cut(s) | 55 |
| Csp6I | GTAC | 3 cut(s) | 74, 186, 434 |
| CviAII | CATG | 4 cut(s) | 17, 189, 234, 581 |
| CviJI | RGCY | 9 cut(s) | 5, 238, 245, 291, 363, 372, 423, 462, 628 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 238, 245, 291, 363, 372, 423, 462, 628 |
| CviQI | GTAC | 3 cut(s) | 74, 186, 434 |
| DdeI | CTNAG | 1 cut(s) | 624 |
| DpnI | GATC | 3 cut(s) | 177, 195, 668 |
| DpnII | GATC | 3 cut(s) | 175, 193, 666 |
| DraIII | CACNNNGTG | 1 cut(s) | 173 |
| Eco130I | CCWWGG | 2 cut(s) | 31, 233 |
| Eco31I | GGTCTC | 2 cut(s) | 353, 627 |
| Eco47I | GGWCC | 1 cut(s) | 125 |
| Eco47III | AGCGCT | 1 cut(s) | 221 |
| EcoRII | CCWGG | 1 cut(s) | 118 |
| EcoT14I | CCWWGG | 2 cut(s) | 31, 233 |
| ErhI | CCWWGG | 2 cut(s) | 31, 233 |
| FaeI | CATG | 4 cut(s) | 20, 192, 237, 584 |
| FatI | CATG | 4 cut(s) | 16, 188, 233, 580 |
| Fnu4HI | GCNGC | 4 cut(s) | 165, 303, 306, 373 |
| Fsp4HI | GCNGC | 4 cut(s) | 165, 303, 306, 373 |
| FspBI | CTAG | 1 cut(s) | 147 |
| GlaI | GCGC | 2 cut(s) | 42, 221 |
| GluI | GCNGC | 4 cut(s) | 165, 303, 306, 373 |
| GsuI | CTGGAG | 3 cut(s) | 141, 267, 460 |
| HaeII | RGCGCY | 1 cut(s) | 223 |
| HaeIII | GGCC | 1 cut(s) | 291 |
| HapII | CCGG | 1 cut(s) | 636 |
| HgaI | GACGC | 1 cut(s) | 55 |
| HhaI | GCGC | 2 cut(s) | 43, 222 |
| Hin1II | CATG | 4 cut(s) | 20, 192, 237, 584 |
| Hin6I | GCGC | 2 cut(s) | 41, 220 |
| HinP1I | GCGC | 2 cut(s) | 41, 220 |
| HindIII | AAGCTT | 1 cut(s) | 421 |
| HinfI | GANTC | 3 cut(s) | 26, 488, 558 |
| HpaII | CCGG | 1 cut(s) | 636 |
| HphI | GGTGA | 1 cut(s) | 78 |
| Hpy166II | GTNNAC | 3 cut(s) | 381, 399, 436 |
| Hpy188I | TCNGA | 2 cut(s) | 210, 612 |
| Hpy188III | TCNNGA | 1 cut(s) | 413 |
| Hpy8I | GTNNAC | 3 cut(s) | 381, 399, 436 |
| HpyAV | CCTTC | 1 cut(s) | 536 |
| HpyCH4III | ACNGT | 2 cut(s) | 321, 499 |
| HpyCH4IV | ACGT | 1 cut(s) | 383 |
| HpyCH4V | TGCA | 4 cut(s) | 215, 308, 375, 597 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 177, 314, 369 |
| HpyF3I | CTNAG | 1 cut(s) | 624 |
| HpySE526I | ACGT | 1 cut(s) | 383 |
| Hsp92II | CATG | 4 cut(s) | 20, 192, 237, 584 |
| HspAI | GCGC | 2 cut(s) | 41, 220 |
| Kzo9I | GATC | 3 cut(s) | 175, 193, 666 |
| Lsp1109I | GCAGC | 3 cut(s) | 289, 292, 359 |
| LweI | GCATC | 1 cut(s) | 584 |
| MaeI | CTAG | 1 cut(s) | 147 |
| MaeII | ACGT | 1 cut(s) | 383 |
| MaeIII | GTNAC | 3 cut(s) | 8, 224, 493 |
| MalI | GATC | 3 cut(s) | 177, 195, 668 |
| MboI | GATC | 3 cut(s) | 175, 193, 666 |
| MboII | GAAGA | 3 cut(s) | 32, 542, 581 |
| MflI | RGATCY | 2 cut(s) | 193, 666 |
| MluCI | AATT | 4 cut(s) | 108, 198, 261, 654 |
| MlyI | GAGTC | 1 cut(s) | 20 |
| MnlI | CCTC | 8 cut(s) | 45, 99, 116, 303, 306, 420, 489, 580 |
| MseI | TTAA | 1 cut(s) | 255 |
| MslI | CAYNNNNRTG | 3 cut(s) | 99, 101, 356 |
| MspI | CCGG | 1 cut(s) | 636 |
| MspR9I | CCNGG | 1 cut(s) | 120 |
| Mva1269I | GAATGC | 2 cut(s) | 217, 450 |
| MvaI | CCWGG | 1 cut(s) | 120 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 177, 314, 369 |
| NcoI | CCATGG | 1 cut(s) | 233 |
| NdeII | GATC | 3 cut(s) | 175, 193, 666 |
| NlaIII | CATG | 4 cut(s) | 20, 192, 237, 584 |
| NlaIV | GGNNCC | 1 cut(s) | 408 |
| NmuCI | GTSAC | 2 cut(s) | 224, 493 |
| NspV | TTCGAA | 1 cut(s) | 567 |
| PctI | GAATGC | 2 cut(s) | 217, 450 |
| PfeI | GAWTC | 2 cut(s) | 488, 558 |
| Pfl23II | CGTACG | 1 cut(s) | 73 |
| PfoI | TCCNGGA | 1 cut(s) | 118 |
| PkrI | GCNGC | 4 cut(s) | 166, 304, 307, 374 |
| PleI | GAGTC | 1 cut(s) | 20 |
| PpsI | GAGTC | 1 cut(s) | 20 |
| Ppu21I | YACGTR | 1 cut(s) | 384 |
| Psp6I | CCWGG | 1 cut(s) | 118 |
| PspGI | CCWGG | 1 cut(s) | 118 |
| PspLI | CGTACG | 1 cut(s) | 73 |
| PspN4I | GGNNCC | 1 cut(s) | 408 |
| PspPI | GGNCC | 2 cut(s) | 125, 290 |
| PstI | CTGCAG | 1 cut(s) | 377 |
| PstNI | CAGNNNCTG | 1 cut(s) | 497 |
| PsuI | RGATCY | 2 cut(s) | 193, 666 |
| RsaI | GTAC | 3 cut(s) | 75, 187, 435 |
| RsaNI | GTAC | 3 cut(s) | 74, 186, 434 |
| RseI | CAYNNNNRTG | 3 cut(s) | 99, 101, 356 |
| SaqAI | TTAA | 1 cut(s) | 255 |
| SatI | GCNGC | 4 cut(s) | 165, 303, 306, 373 |
| Sau3AI | GATC | 3 cut(s) | 175, 193, 666 |
| Sau96I | GGNCC | 2 cut(s) | 125, 290 |
| SchI | GAGTC | 1 cut(s) | 20 |
| ScrFI | CCNGG | 1 cut(s) | 120 |
| SfaNI | GCATC | 1 cut(s) | 584 |
| SfcI | CTRYAG | 1 cut(s) | 373 |
| SfuI | TTCGAA | 1 cut(s) | 567 |
| SinI | GGWCC | 1 cut(s) | 125 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 99, 101, 356 |
| Sse9I | AATT | 4 cut(s) | 108, 198, 261, 654 |
| SsiI | CCGC | 2 cut(s) | 139, 165 |
| SspMI | CTAG | 1 cut(s) | 147 |
| StyD4I | CCNGG | 1 cut(s) | 118 |
| StyI | CCWWGG | 2 cut(s) | 31, 233 |
| TaaI | ACNGT | 2 cut(s) | 321, 499 |
| TaiI | ACGT | 1 cut(s) | 386 |
| TaqI | TCGA | 1 cut(s) | 567 |
| TasI | AATT | 4 cut(s) | 108, 198, 261, 654 |
| TatI | WGTACW | 1 cut(s) | 433 |
| TauI | GCSGC | 1 cut(s) | 167 |
| TfiI | GAWTC | 2 cut(s) | 488, 558 |
| Tru1I | TTAA | 1 cut(s) | 255 |
| Tru9I | TTAA | 1 cut(s) | 255 |
| TscAI | CASTG | 5 cut(s) | 178, 443, 502, 623, 679 |
| TseFI | GTSAC | 2 cut(s) | 224, 493 |
| TseI | GCWGC | 3 cut(s) | 302, 305, 372 |
| Tsp45I | GTSAC | 2 cut(s) | 224, 493 |
| TspDTI | ATGAA | 2 cut(s) | 33, 273 |
| TspRI | CASTG | 5 cut(s) | 178, 443, 502, 623, 679 |
| VpaK11BI | GGWCC | 1 cut(s) | 125 |
| XapI | RAATTY | 1 cut(s) | 261 |
| XspI | CTAG | 1 cut(s) | 147 |