Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 466 |
| Acc16I | TGCGCA | 1 cut(s) | 458 |
| Acc36I | ACCTGC | 1 cut(s) | 466 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 332 |
| AccI | GTMKAC | 1 cut(s) | 539 |
| AccII | CGCG | 1 cut(s) | 183 |
| AciI | CCGC | 2 cut(s) | 181, 253 |
| AclWI | GGATC | 1 cut(s) | 396 |
| AcuI | CTGAAG | 1 cut(s) | 530 |
| AcvI | CACGTG | 1 cut(s) | 579 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 289, 332 |
| AflIII | ACRYGT | 1 cut(s) | 578 |
| AgsI | TTSAA | 4 cut(s) | 61, 74, 242, 415 |
| AjiI | CACGTC | 1 cut(s) | 247 |
| AjnI | CCWGG | 1 cut(s) | 382 |
| Alw26I | GTCTC | 2 cut(s) | 206, 323 |
| AlwI | GGATC | 1 cut(s) | 396 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 332 |
| AspLEI | GCGC | 2 cut(s) | 147, 459 |
| AsuC2I | CCSGG | 1 cut(s) | 376 |
| AsuHPI | GGTGA | 1 cut(s) | 419 |
| BbrPI | CACGTG | 1 cut(s) | 579 |
| BbvCI | CCTCAGC | 1 cut(s) | 101 |
| BccI | CCATC | 1 cut(s) | 233 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 464, 498 |
| BciT130I | CCWGG | 1 cut(s) | 384 |
| BcnI | CCSGG | 1 cut(s) | 376 |
| BcoDI | GTCTC | 2 cut(s) | 206, 323 |
| BfaI | CTAG | 2 cut(s) | 48, 371 |
| BfoI | RGCGCY | 1 cut(s) | 148 |
| BfuAI | ACCTGC | 1 cut(s) | 466 |
| Bme1390I | CCNGG | 2 cut(s) | 376, 384 |
| BmgBI | CACGTC | 1 cut(s) | 247 |
| BmrFI | CCNGG | 2 cut(s) | 376, 384 |
| BmsI | GCATC | 5 cut(s) | 88, 93, 256, 462, 478 |
| BpmI | CTGGAG | 1 cut(s) | 549 |
| Bpu10I | CCTNAGC | 1 cut(s) | 101 |
| BpuMI | CCSGG | 1 cut(s) | 376 |
| BsaAI | YACGTR | 2 cut(s) | 543, 579 |
| BsaI | GGTCTC | 1 cut(s) | 206 |
| BsaJI | CCNNGG | 1 cut(s) | 383 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 438, 468 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 289, 332 |
| Bse1I | ACTGG | 1 cut(s) | 337 |
| Bse3DI | GCAATG | 1 cut(s) | 112 |
| BseBI | CCWGG | 1 cut(s) | 384 |
| BseDI | CCNNGG | 1 cut(s) | 383 |
| BseGI | GGATG | 3 cut(s) | 223, 322, 493 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 289, 332 |
| BseMI | GCAATG | 1 cut(s) | 112 |
| BseMII | CTCAG | 1 cut(s) | 115 |
| BseNI | ACTGG | 1 cut(s) | 337 |
| Bsh1236I | CGCG | 1 cut(s) | 183 |
| Bsh1285I | CGRYCG | 1 cut(s) | 181 |
| BsiEI | CGRYCG | 1 cut(s) | 181 |
| BsiSI | CCGG | 1 cut(s) | 376 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 289, 332 |
| BsmAI | GTCTC | 2 cut(s) | 206, 323 |
| Bso31I | GGTCTC | 1 cut(s) | 206 |
| Bsp143I | GATC | 2 cut(s) | 365, 388 |
| BspACI | CCGC | 2 cut(s) | 181, 253 |
| BspCNI | CTCAG | 1 cut(s) | 114 |
| BspFNI | CGCG | 1 cut(s) | 183 |
| BspMI | ACCTGC | 1 cut(s) | 466 |
| BspPI | GGATC | 1 cut(s) | 396 |
| BspTNI | GGTCTC | 1 cut(s) | 206 |
| BsrDI | GCAATG | 1 cut(s) | 112 |
| BsrI | ACTGG | 1 cut(s) | 337 |
| BssECI | CCNNGG | 1 cut(s) | 383 |
| BssMI | GATC | 2 cut(s) | 365, 388 |
| BssNAI | GTATAC | 1 cut(s) | 540 |
| Bst1107I | GTATAC | 1 cut(s) | 540 |
| Bst2UI | CCWGG | 1 cut(s) | 384 |
| Bst4CI | ACNGT | 1 cut(s) | 23 |
| BstBAI | YACGTR | 2 cut(s) | 543, 579 |
| BstDEI | CTNAG | 3 cut(s) | 101, 120, 140 |
| BstF5I | GGATG | 3 cut(s) | 223, 322, 493 |
| BstFNI | CGCG | 1 cut(s) | 183 |
| BstH2I | RGCGCY | 1 cut(s) | 148 |
| BstHHI | GCGC | 2 cut(s) | 147, 459 |
| BstKTI | GATC | 2 cut(s) | 368, 391 |
| BstMAI | GTCTC | 2 cut(s) | 206, 323 |
| BstMBI | GATC | 2 cut(s) | 365, 388 |
| BstMCI | CGRYCG | 1 cut(s) | 181 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 456 |
| BstNI | CCWGG | 1 cut(s) | 384 |
| BstNSI | RCATGY | 1 cut(s) | 56 |
| BstSCI | CCNGG | 2 cut(s) | 374, 382 |
| BstUI | CGCG | 1 cut(s) | 183 |
| BstX2I | RGATCY | 1 cut(s) | 388 |
| BstYI | RGATCY | 1 cut(s) | 388 |
| BstZ17I | GTATAC | 1 cut(s) | 540 |
| BtgZI | GCGATG | 1 cut(s) | 65 |
| BtrI | CACGTC | 1 cut(s) | 247 |
| BtsCI | GGATG | 3 cut(s) | 223, 322, 493 |
| BveI | ACCTGC | 1 cut(s) | 466 |
| CaiI | CAGNNNCTG | 1 cut(s) | 332 |
| CfoI | GCGC | 2 cut(s) | 147, 459 |
| CviAII | CATG | 1 cut(s) | 53 |
| CviJI | RGCY | 2 cut(s) | 281, 374 |
| CviKI_1 | RGCY | 2 cut(s) | 281, 374 |
| DdeI | CTNAG | 3 cut(s) | 101, 120, 140 |
| DpnI | GATC | 2 cut(s) | 367, 390 |
| DpnII | GATC | 2 cut(s) | 365, 388 |
| Eco31I | GGTCTC | 1 cut(s) | 206 |
| Eco57I | CTGAAG | 1 cut(s) | 530 |
| Eco72I | CACGTG | 1 cut(s) | 579 |
| EcoRII | CCWGG | 1 cut(s) | 382 |
| FaeI | CATG | 1 cut(s) | 56 |
| FaiI | YATR | 9 cut(s) | 54, 165, 261, 273, 275, 318, 359, 518, 540 |
| FatI | CATG | 1 cut(s) | 52 |
| FblI | GTMKAC | 1 cut(s) | 539 |
| FokI | GGATG | 3 cut(s) | 230, 309, 500 |
| FspBI | CTAG | 2 cut(s) | 48, 371 |
| FspI | TGCGCA | 1 cut(s) | 458 |
| GlaI | GCGC | 2 cut(s) | 146, 458 |
| GsuI | CTGGAG | 1 cut(s) | 549 |
| HaeII | RGCGCY | 1 cut(s) | 148 |
| HapII | CCGG | 1 cut(s) | 376 |
| HhaI | GCGC | 2 cut(s) | 147, 459 |
| Hin1II | CATG | 1 cut(s) | 56 |
| Hin6I | GCGC | 2 cut(s) | 145, 457 |
| HinP1I | GCGC | 2 cut(s) | 145, 457 |
| HinfI | GANTC | 3 cut(s) | 221, 379, 551 |
| HpaII | CCGG | 1 cut(s) | 376 |
| HphI | GGTGA | 1 cut(s) | 419 |
| Hpy166II | GTNNAC | 1 cut(s) | 540 |
| Hpy188I | TCNGA | 2 cut(s) | 499, 550 |
| Hpy188III | TCNNGA | 5 cut(s) | 16, 242, 326, 444, 485 |
| Hpy8I | GTNNAC | 1 cut(s) | 540 |
| HpyAV | CCTTC | 2 cut(s) | 505, 556 |
| HpyCH4III | ACNGT | 1 cut(s) | 23 |
| HpyCH4IV | ACGT | 3 cut(s) | 246, 542, 578 |
| HpyCH4V | TGCA | 2 cut(s) | 117, 475 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 456 |
| HpyF3I | CTNAG | 3 cut(s) | 101, 120, 140 |
| HpySE526I | ACGT | 3 cut(s) | 246, 542, 578 |
| Hsp92II | CATG | 1 cut(s) | 56 |
| HspAI | GCGC | 2 cut(s) | 145, 457 |
| Kzo9I | GATC | 2 cut(s) | 365, 388 |
| LmnI | GCTCC | 1 cut(s) | 124 |
| LweI | GCATC | 5 cut(s) | 88, 93, 256, 462, 478 |
| MaeI | CTAG | 2 cut(s) | 48, 371 |
| MaeII | ACGT | 3 cut(s) | 246, 542, 578 |
| MaeIII | GTNAC | 2 cut(s) | 360, 503 |
| MalI | GATC | 2 cut(s) | 367, 390 |
| MboI | GATC | 2 cut(s) | 365, 388 |
| MboII | GAAGA | 1 cut(s) | 73 |
| MflI | RGATCY | 1 cut(s) | 388 |
| MluCI | AATT | 1 cut(s) | 69 |
| MlyI | GAGTC | 1 cut(s) | 215 |
| MnlI | CCTC | 7 cut(s) | 110, 171, 283, 440, 503, 524, 561 |
| MseI | TTAA | 2 cut(s) | 68, 586 |
| MspI | CCGG | 1 cut(s) | 376 |
| MspR9I | CCNGG | 2 cut(s) | 376, 384 |
| MvaI | CCWGG | 1 cut(s) | 384 |
| MvnI | CGCG | 1 cut(s) | 183 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 456 |
| NciI | CCSGG | 1 cut(s) | 376 |
| NdeII | GATC | 2 cut(s) | 365, 388 |
| NlaIII | CATG | 1 cut(s) | 56 |
| NsbI | TGCGCA | 1 cut(s) | 458 |
| NspI | RCATGY | 1 cut(s) | 56 |
| PaqCI | CACCTGC | 1 cut(s) | 466 |
| PfeI | GAWTC | 2 cut(s) | 379, 551 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 332 |
| PleI | GAGTC | 1 cut(s) | 215 |
| PmaCI | CACGTG | 1 cut(s) | 579 |
| PmlI | CACGTG | 1 cut(s) | 579 |
| PpsI | GAGTC | 1 cut(s) | 215 |
| Ppu21I | YACGTR | 2 cut(s) | 543, 579 |
| Psp6I | CCWGG | 1 cut(s) | 382 |
| PspCI | CACGTG | 1 cut(s) | 579 |
| PspGI | CCWGG | 1 cut(s) | 382 |
| PstNI | CAGNNNCTG | 1 cut(s) | 332 |
| PsuI | RGATCY | 1 cut(s) | 388 |
| SaqAI | TTAA | 2 cut(s) | 68, 586 |
| Sau3AI | GATC | 2 cut(s) | 365, 388 |
| SchI | GAGTC | 1 cut(s) | 215 |
| ScrFI | CCNGG | 2 cut(s) | 376, 384 |
| SetI | ASST | 7 cut(s) | 31, 249, 294, 480, 510, 545, 581 |
| SfaNI | GCATC | 5 cut(s) | 88, 93, 256, 462, 478 |
| Sse9I | AATT | 1 cut(s) | 69 |
| SsiI | CCGC | 2 cut(s) | 181, 253 |
| SspI | AATATT | 2 cut(s) | 7, 423 |
| SspMI | CTAG | 2 cut(s) | 48, 371 |
| StyD4I | CCNGG | 2 cut(s) | 374, 382 |
| TaaI | ACNGT | 1 cut(s) | 23 |
| TaiI | ACGT | 3 cut(s) | 249, 545, 581 |
| TaqI | TCGA | 1 cut(s) | 177 |
| TasI | AATT | 1 cut(s) | 69 |
| TfiI | GAWTC | 2 cut(s) | 379, 551 |
| Tru1I | TTAA | 2 cut(s) | 68, 586 |
| Tru9I | TTAA | 2 cut(s) | 68, 586 |
| TspDTI | ATGAA | 2 cut(s) | 17, 432 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 332 |
| XceI | RCATGY | 1 cut(s) | 56 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 390 |
| XmiI | GTMKAC | 1 cut(s) | 539 |
| XspI | CTAG | 2 cut(s) | 48, 371 |