ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 17 - 176 | 2.2e-07 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 354 |
| AclWI | GGATC | 1 cut(s) | 275 |
| AcsI | RAATTY | 2 cut(s) | 342, 584 |
| AgsI | TTSAA | 1 cut(s) | 347 |
| AleI | CACNNNNGTG | 1 cut(s) | 66 |
| Alw26I | GTCTC | 1 cut(s) | 129 |
| AlwI | GGATC | 1 cut(s) | 275 |
| Aor13HI | TCCGGA | 1 cut(s) | 354 |
| AoxI | GGCC | 3 cut(s) | 110, 260, 401 |
| ApoI | RAATTY | 2 cut(s) | 342, 584 |
| AspS9I | GGNCC | 2 cut(s) | 260, 401 |
| AsuHPI | GGTGA | 2 cut(s) | 265, 290 |
| BaeGI | GKGCMC | 1 cut(s) | 135 |
| BanII | GRGCYC | 1 cut(s) | 519 |
| BccI | CCATC | 1 cut(s) | 545 |
| BceAI | ACGGC | 1 cut(s) | 247 |
| BcoDI | GTCTC | 1 cut(s) | 129 |
| BfaI | CTAG | 1 cut(s) | 246 |
| BfmI | CTRYAG | 1 cut(s) | 429 |
| BmgT120I | GGNCC | 2 cut(s) | 260, 401 |
| BmiI | GGNNCC | 1 cut(s) | 261 |
| BmrI | ACTGGG | 1 cut(s) | 570 |
| BmsI | GCATC | 2 cut(s) | 440, 499 |
| BmuI | ACTGGG | 1 cut(s) | 570 |
| BsaJI | CCNNGG | 1 cut(s) | 263 |
| BsaWI | WCCGGW | 1 cut(s) | 354 |
| Bse1I | ACTGG | 1 cut(s) | 565 |
| BseAI | TCCGGA | 1 cut(s) | 354 |
| BseDI | CCNNGG | 1 cut(s) | 263 |
| BseGI | GGATG | 1 cut(s) | 514 |
| BseMII | CTCAG | 3 cut(s) | 140, 310, 534 |
| BseNI | ACTGG | 1 cut(s) | 565 |
| BseRI | GAGGAG | 1 cut(s) | 177 |
| BseSI | GKGCMC | 1 cut(s) | 135 |
| BshFI | GGCC | 3 cut(s) | 112, 262, 403 |
| BsiSI | CCGG | 1 cut(s) | 355 |
| BslFI | GGGAC | 1 cut(s) | 579 |
| BsmAI | GTCTC | 1 cut(s) | 129 |
| BsmBI | CGTCTC | 1 cut(s) | 129 |
| BsmFI | GGGAC | 1 cut(s) | 579 |
| BsmI | GAATGC | 1 cut(s) | 364 |
| BsnI | GGCC | 3 cut(s) | 112, 262, 403 |
| Bsp1286I | GDGCHC | 2 cut(s) | 135, 519 |
| Bsp13I | TCCGGA | 1 cut(s) | 354 |
| Bsp143I | GATC | 3 cut(s) | 267, 329, 523 |
| BspANI | GGCC | 3 cut(s) | 112, 262, 403 |
| BspCNI | CTCAG | 3 cut(s) | 139, 309, 533 |
| BspEI | TCCGGA | 1 cut(s) | 354 |
| BspHI | TCATGA | 1 cut(s) | 493 |
| BspLI | GGNNCC | 1 cut(s) | 261 |
| BspPI | GGATC | 1 cut(s) | 275 |
| BsrI | ACTGG | 1 cut(s) | 565 |
| BssECI | CCNNGG | 1 cut(s) | 263 |
| BssMI | GATC | 3 cut(s) | 267, 329, 523 |
| Bst4CI | ACNGT | 2 cut(s) | 65, 106 |
| BstDEI | CTNAG | 3 cut(s) | 126, 296, 520 |
| BstDSI | CCRYGG | 1 cut(s) | 263 |
| BstF5I | GGATG | 1 cut(s) | 514 |
| BstKTI | GATC | 3 cut(s) | 270, 332, 526 |
| BstMAI | GTCTC | 1 cut(s) | 129 |
| BstMBI | GATC | 3 cut(s) | 267, 329, 523 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 617 |
| BstSFI | CTRYAG | 1 cut(s) | 429 |
| BstSLI | GKGCMC | 1 cut(s) | 135 |
| BsuRI | GGCC | 3 cut(s) | 112, 262, 403 |
| BtgI | CCRYGG | 1 cut(s) | 263 |
| BtgZI | GCGATG | 1 cut(s) | 95 |
| BtsCI | GGATG | 1 cut(s) | 514 |
| BtsIMutI | CAGTG | 1 cut(s) | 304 |
| CciI | TCATGA | 1 cut(s) | 493 |
| Cfr13I | GGNCC | 2 cut(s) | 260, 401 |
| CviAII | CATG | 3 cut(s) | 155, 494, 503 |
| CviJI | RGCY | 7 cut(s) | 112, 245, 262, 403, 426, 442, 517 |
| CviKI_1 | RGCY | 7 cut(s) | 112, 245, 262, 403, 426, 442, 517 |
| DdeI | CTNAG | 3 cut(s) | 126, 296, 520 |
| DpnI | GATC | 3 cut(s) | 269, 331, 525 |
| DpnII | GATC | 3 cut(s) | 267, 329, 523 |
| Eco147I | AGGCCT | 1 cut(s) | 112 |
| Eco24I | GRGCYC | 1 cut(s) | 519 |
| Eco32I | GATATC | 1 cut(s) | 10 |
| EcoRV | GATATC | 1 cut(s) | 10 |
| EcoT38I | GRGCYC | 1 cut(s) | 519 |
| Esp3I | CGTCTC | 1 cut(s) | 129 |
| FaeI | CATG | 3 cut(s) | 158, 497, 506 |
| FaiI | YATR | 8 cut(s) | 156, 170, 431, 495, 504, 528, 536, 591 |
| FaqI | GGGAC | 1 cut(s) | 579 |
| FatI | CATG | 3 cut(s) | 154, 493, 502 |
| FokI | GGATG | 1 cut(s) | 521 |
| FriOI | GRGCYC | 1 cut(s) | 519 |
| FspBI | CTAG | 1 cut(s) | 246 |
| HaeIII | GGCC | 3 cut(s) | 112, 262, 403 |
| HapII | CCGG | 1 cut(s) | 355 |
| Hin1II | CATG | 3 cut(s) | 158, 497, 506 |
| HincII | GTYRAC | 1 cut(s) | 546 |
| HindII | GTYRAC | 1 cut(s) | 546 |
| HinfI | GANTC | 1 cut(s) | 193 |
| HpaII | CCGG | 1 cut(s) | 355 |
| HphI | GGTGA | 2 cut(s) | 265, 290 |
| Hpy166II | GTNNAC | 1 cut(s) | 546 |
| Hpy188I | TCNGA | 2 cut(s) | 334, 523 |
| Hpy188III | TCNNGA | 4 cut(s) | 197, 355, 464, 494 |
| Hpy8I | GTNNAC | 1 cut(s) | 546 |
| Hpy99I | CGWCG | 1 cut(s) | 240 |
| HpyAV | CCTTC | 1 cut(s) | 152 |
| HpyCH4III | ACNGT | 2 cut(s) | 65, 106 |
| HpyCH4IV | ACGT | 1 cut(s) | 235 |
| HpyCH4V | TGCA | 1 cut(s) | 512 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 617 |
| HpyF3I | CTNAG | 3 cut(s) | 126, 296, 520 |
| HpySE526I | ACGT | 1 cut(s) | 235 |
| Hsp92II | CATG | 3 cut(s) | 158, 497, 506 |
| Kpn2I | TCCGGA | 1 cut(s) | 354 |
| Kzo9I | GATC | 3 cut(s) | 267, 329, 523 |
| LpnPI | CCDG | 8 cut(s) | 113, 196, 210, 368, 384, 428, 498, 546 |
| LweI | GCATC | 2 cut(s) | 440, 499 |
| MaeI | CTAG | 1 cut(s) | 246 |
| MaeII | ACGT | 1 cut(s) | 235 |
| MaeIII | GTNAC | 6 cut(s) | 59, 175, 301, 378, 409, 556 |
| MalI | GATC | 3 cut(s) | 269, 331, 525 |
| MboI | GATC | 3 cut(s) | 267, 329, 523 |
| MboII | GAAGA | 1 cut(s) | 606 |
| MhlI | GDGCHC | 2 cut(s) | 135, 519 |
| MluCI | AATT | 3 cut(s) | 19, 342, 584 |
| MmeI | TCCRAC | 1 cut(s) | 68 |
| MnlI | CCTC | 8 cut(s) | 26, 155, 249, 411, 416, 432, 490, 601 |
| MroI | TCCGGA | 1 cut(s) | 354 |
| MseI | TTAA | 3 cut(s) | 18, 285, 459 |
| MslI | CAYNNNNRTG | 5 cut(s) | 66, 138, 140, 492, 507 |
| MspI | CCGG | 1 cut(s) | 355 |
| Mva1269I | GAATGC | 1 cut(s) | 364 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 617 |
| NdeII | GATC | 3 cut(s) | 267, 329, 523 |
| NlaIII | CATG | 3 cut(s) | 158, 497, 506 |
| NlaIV | GGNNCC | 1 cut(s) | 261 |
| NmuCI | GTSAC | 2 cut(s) | 59, 175 |
| OliI | CACNNNNGTG | 1 cut(s) | 66 |
| PagI | TCATGA | 1 cut(s) | 493 |
| PceI | AGGCCT | 1 cut(s) | 112 |
| PctI | GAATGC | 1 cut(s) | 364 |
| PfeI | GAWTC | 1 cut(s) | 193 |
| PspN4I | GGNNCC | 1 cut(s) | 261 |
| PspPI | GGNCC | 2 cut(s) | 260, 401 |
| RseI | CAYNNNNRTG | 5 cut(s) | 66, 138, 140, 492, 507 |
| SaqAI | TTAA | 3 cut(s) | 18, 285, 459 |
| Sau3AI | GATC | 3 cut(s) | 267, 329, 523 |
| Sau96I | GGNCC | 2 cut(s) | 260, 401 |
| SduI | GDGCHC | 2 cut(s) | 135, 519 |
| SetI | ASST | 4 cut(s) | 28, 37, 238, 501 |
| SfaNI | GCATC | 2 cut(s) | 440, 499 |
| SfcI | CTRYAG | 1 cut(s) | 429 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 66, 138, 140, 492, 507 |
| Sse9I | AATT | 3 cut(s) | 19, 342, 584 |
| SseBI | AGGCCT | 1 cut(s) | 112 |
| SspMI | CTAG | 1 cut(s) | 246 |
| StuI | AGGCCT | 1 cut(s) | 112 |
| TaaI | ACNGT | 2 cut(s) | 65, 106 |
| TaiI | ACGT | 1 cut(s) | 238 |
| TasI | AATT | 3 cut(s) | 19, 342, 584 |
| TfiI | GAWTC | 1 cut(s) | 193 |
| Tru1I | TTAA | 3 cut(s) | 18, 285, 459 |
| Tru9I | TTAA | 3 cut(s) | 18, 285, 459 |
| TscAI | CASTG | 1 cut(s) | 304 |
| TseFI | GTSAC | 2 cut(s) | 59, 175 |
| Tsp45I | GTSAC | 2 cut(s) | 59, 175 |
| TspDTI | ATGAA | 3 cut(s) | 171, 482, 491 |
| TspGWI | ACGGA | 1 cut(s) | 488 |
| TspRI | CASTG | 1 cut(s) | 304 |
| XapI | RAATTY | 2 cut(s) | 342, 584 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 411 |
| XspI | CTAG | 1 cut(s) | 246 |