ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 6 - 139 | 1.9e-09 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 462 |
| AciI | CCGC | 1 cut(s) | 27 |
| AclWI | GGATC | 1 cut(s) | 758 |
| AcsI | RAATTY | 3 cut(s) | 217, 236, 331 |
| AfaI | GTAC | 2 cut(s) | 166, 511 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 72 |
| AgsI | TTSAA | 4 cut(s) | 154, 385, 600, 746 |
| AluBI | AGCT | 2 cut(s) | 355, 697 |
| AluI | AGCT | 2 cut(s) | 355, 697 |
| Alw21I | GWGCWC | 1 cut(s) | 357 |
| Alw26I | GTCTC | 2 cut(s) | 101, 661 |
| AlwI | GGATC | 1 cut(s) | 758 |
| Ama87I | CYCGRG | 1 cut(s) | 42 |
| AoxI | GGCC | 2 cut(s) | 54, 74 |
| ApeKI | GCWGC | 1 cut(s) | 800 |
| ApoI | RAATTY | 3 cut(s) | 217, 236, 331 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 8 |
| AspS9I | GGNCC | 1 cut(s) | 55 |
| AsuC2I | CCSGG | 1 cut(s) | 797 |
| AsuII | TTCGAA | 1 cut(s) | 364 |
| AvaI | CYCGRG | 1 cut(s) | 42 |
| BaeGI | GKGCMC | 1 cut(s) | 49 |
| BanII | GRGCYC | 1 cut(s) | 357 |
| Bbv12I | GWGCWC | 1 cut(s) | 357 |
| BbvI | GCAGC | 1 cut(s) | 787 |
| BccI | CCATC | 2 cut(s) | 260, 791 |
| BciVI | GTATCC | 1 cut(s) | 540 |
| BcnI | CCSGG | 1 cut(s) | 797 |
| BcoDI | GTCTC | 2 cut(s) | 101, 661 |
| BfaI | CTAG | 4 cut(s) | 32, 189, 714, 888 |
| BfmI | CTRYAG | 1 cut(s) | 375 |
| BfuI | GTATCC | 1 cut(s) | 540 |
| BisI | GCNGC | 1 cut(s) | 801 |
| BlsI | GCNGC | 1 cut(s) | 802 |
| BmcAI | AGTACT | 1 cut(s) | 511 |
| Bme1390I | CCNGG | 1 cut(s) | 797 |
| BmeT110I | CYCGRG | 1 cut(s) | 42 |
| BmgT120I | GGNCC | 1 cut(s) | 55 |
| BmiI | GGNNCC | 1 cut(s) | 64 |
| BmrFI | CCNGG | 1 cut(s) | 797 |
| BmsI | GCATC | 2 cut(s) | 262, 844 |
| BpmI | CTGGAG | 1 cut(s) | 889 |
| Bpu14I | TTCGAA | 1 cut(s) | 364 |
| BpuMI | CCSGG | 1 cut(s) | 797 |
| BsaJI | CCNNGG | 2 cut(s) | 58, 767 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 98, 128, 261, 291 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 72 |
| Bse1I | ACTGG | 2 cut(s) | 310, 872 |
| Bse3DI | GCAATG | 1 cut(s) | 568 |
| BseDI | CCNNGG | 2 cut(s) | 58, 767 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 72 |
| BseMI | GCAATG | 1 cut(s) | 568 |
| BseMII | CTCAG | 5 cut(s) | 125, 297, 520, 672, 684 |
| BseNI | ACTGG | 2 cut(s) | 310, 872 |
| BseSI | GKGCMC | 1 cut(s) | 49 |
| BseXI | GCAGC | 1 cut(s) | 787 |
| BshFI | GGCC | 2 cut(s) | 56, 76 |
| BsiHKAI | GWGCWC | 1 cut(s) | 357 |
| BsiHKCI | CYCGRG | 1 cut(s) | 42 |
| BsiSI | CCGG | 1 cut(s) | 796 |
| BslFI | GGGAC | 1 cut(s) | 892 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 72 |
| BsmAI | GTCTC | 2 cut(s) | 101, 661 |
| BsmFI | GGGAC | 1 cut(s) | 892 |
| BsmI | GAATGC | 1 cut(s) | 339 |
| BsnI | GGCC | 2 cut(s) | 56, 76 |
| BsoBI | CYCGRG | 1 cut(s) | 42 |
| Bsp119I | TTCGAA | 1 cut(s) | 364 |
| Bsp1286I | GDGCHC | 2 cut(s) | 49, 357 |
| Bsp1407I | TGTACA | 1 cut(s) | 164 |
| Bsp143I | GATC | 4 cut(s) | 38, 502, 661, 763 |
| BspACI | CCGC | 1 cut(s) | 27 |
| BspANI | GGCC | 2 cut(s) | 56, 76 |
| BspCNI | CTCAG | 5 cut(s) | 124, 296, 519, 671, 685 |
| BspLI | GGNNCC | 1 cut(s) | 64 |
| BspPI | GGATC | 1 cut(s) | 758 |
| BspT104I | TTCGAA | 1 cut(s) | 364 |
| BsrDI | GCAATG | 1 cut(s) | 568 |
| BsrGI | TGTACA | 1 cut(s) | 164 |
| BsrI | ACTGG | 2 cut(s) | 310, 872 |
| BssECI | CCNNGG | 2 cut(s) | 58, 767 |
| BssMI | GATC | 4 cut(s) | 38, 502, 661, 763 |
| BssT1I | CCWWGG | 2 cut(s) | 58, 767 |
| Bst4CI | ACNGT | 5 cut(s) | 169, 379, 477, 514, 645 |
| Bst6I | CTCTTC | 1 cut(s) | 741 |
| BstAUI | TGTACA | 1 cut(s) | 164 |
| BstBI | TTCGAA | 1 cut(s) | 364 |
| BstDEI | CTNAG | 6 cut(s) | 71, 111, 283, 506, 658, 693 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 70 |
| BstKTI | GATC | 4 cut(s) | 41, 505, 664, 766 |
| BstMAI | GTCTC | 2 cut(s) | 101, 661 |
| BstMBI | GATC | 4 cut(s) | 38, 502, 661, 763 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 53 |
| BstSCI | CCNGG | 1 cut(s) | 795 |
| BstSFI | CTRYAG | 1 cut(s) | 375 |
| BstSLI | GKGCMC | 1 cut(s) | 49 |
| BstV1I | GCAGC | 1 cut(s) | 787 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 540 |
| BsuI | GTATCC | 1 cut(s) | 540 |
| BsuRI | GGCC | 2 cut(s) | 56, 76 |
| BtsIMutI | CAGTG | 1 cut(s) | 865 |
| Cfr13I | GGNCC | 1 cut(s) | 55 |
| Csp6I | GTAC | 2 cut(s) | 165, 510 |
| CviAII | CATG | 2 cut(s) | 103, 540 |
| CviJI | RGCY | 7 cut(s) | 56, 76, 355, 583, 617, 697, 800 |
| CviKI_1 | RGCY | 7 cut(s) | 56, 76, 355, 583, 617, 697, 800 |
| CviQI | GTAC | 2 cut(s) | 165, 510 |
| DdeI | CTNAG | 6 cut(s) | 71, 111, 283, 506, 658, 693 |
| DpnI | GATC | 4 cut(s) | 40, 504, 663, 765 |
| DpnII | GATC | 4 cut(s) | 38, 502, 661, 763 |
| DraI | TTTAAA | 1 cut(s) | 235 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 462 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 462 |
| Eam1104I | CTCTTC | 1 cut(s) | 741 |
| EarI | CTCTTC | 1 cut(s) | 741 |
| Ecl136II | GAGCTC | 1 cut(s) | 355 |
| Eco130I | CCWWGG | 2 cut(s) | 58, 767 |
| Eco147I | AGGCCT | 1 cut(s) | 76 |
| Eco24I | GRGCYC | 1 cut(s) | 357 |
| Eco53kI | GAGCTC | 1 cut(s) | 355 |
| Eco88I | CYCGRG | 1 cut(s) | 42 |
| EcoICRI | GAGCTC | 1 cut(s) | 355 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 70 |
| EcoO109I | RGGNCCY | 1 cut(s) | 55 |
| EcoRI | GAATTC | 1 cut(s) | 331 |
| EcoT14I | CCWWGG | 2 cut(s) | 58, 767 |
| EcoT38I | GRGCYC | 1 cut(s) | 357 |
| ErhI | CCWWGG | 2 cut(s) | 58, 767 |
| FaeI | CATG | 2 cut(s) | 106, 543 |
| FaiI | YATR | 9 cut(s) | 81, 104, 261, 300, 315, 522, 541, 641, 815 |
| FaqI | GGGAC | 1 cut(s) | 892 |
| FatI | CATG | 2 cut(s) | 102, 539 |
| Fnu4HI | GCNGC | 1 cut(s) | 801 |
| FriOI | GRGCYC | 1 cut(s) | 357 |
| Fsp4HI | GCNGC | 1 cut(s) | 801 |
| FspBI | CTAG | 4 cut(s) | 32, 189, 714, 888 |
| GluI | GCNGC | 1 cut(s) | 801 |
| GsuI | CTGGAG | 1 cut(s) | 889 |
| HaeIII | GGCC | 2 cut(s) | 56, 76 |
| HapII | CCGG | 1 cut(s) | 796 |
| Hin1II | CATG | 2 cut(s) | 106, 543 |
| HinfI | GANTC | 2 cut(s) | 109, 366 |
| HpaII | CCGG | 1 cut(s) | 796 |
| Hpy166II | GTNNAC | 2 cut(s) | 280, 681 |
| Hpy188I | TCNGA | 3 cut(s) | 286, 661, 763 |
| Hpy188III | TCNNGA | 1 cut(s) | 714 |
| Hpy8I | GTNNAC | 2 cut(s) | 280, 681 |
| HpyCH4III | ACNGT | 5 cut(s) | 169, 379, 477, 514, 645 |
| HpyCH4V | TGCA | 1 cut(s) | 639 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 53 |
| HpyF3I | CTNAG | 6 cut(s) | 71, 111, 283, 506, 658, 693 |
| Hsp92II | CATG | 2 cut(s) | 106, 543 |
| Kzo9I | GATC | 4 cut(s) | 38, 502, 661, 763 |
| LmnI | GCTCC | 1 cut(s) | 352 |
| LpnPI | CCDG | 5 cut(s) | 38, 99, 291, 809, 853 |
| Lsp1109I | GCAGC | 1 cut(s) | 787 |
| LweI | GCATC | 2 cut(s) | 262, 844 |
| MaeI | CTAG | 4 cut(s) | 32, 189, 714, 888 |
| MaeIII | GTNAC | 1 cut(s) | 182 |
| MalI | GATC | 4 cut(s) | 40, 504, 663, 765 |
| MboI | GATC | 4 cut(s) | 38, 502, 661, 763 |
| MboII | GAAGA | 7 cut(s) | 16, 158, 237, 240, 353, 506, 758 |
| MhlI | GDGCHC | 2 cut(s) | 49, 357 |
| MluCI | AATT | 8 cut(s) | 154, 217, 236, 331, 417, 566, 876, 913 |
| MlyI | GAGTC | 1 cut(s) | 103 |
| MmeI | TCCRAC | 2 cut(s) | 96, 471 |
| MnlI | CCTC | 8 cut(s) | 87, 110, 424, 519, 550, 568, 636, 742 |
| MroXI | GAANNNNTTC | 1 cut(s) | 8 |
| MseI | TTAA | 5 cut(s) | 140, 203, 234, 411, 446 |
| MslI | CAYNNNNRTG | 2 cut(s) | 264, 538 |
| MspI | CCGG | 1 cut(s) | 796 |
| MspR9I | CCNGG | 1 cut(s) | 797 |
| Mva1269I | GAATGC | 1 cut(s) | 339 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 53 |
| NciI | CCSGG | 1 cut(s) | 797 |
| NdeII | GATC | 4 cut(s) | 38, 502, 661, 763 |
| NlaIII | CATG | 2 cut(s) | 106, 543 |
| NlaIV | GGNNCC | 1 cut(s) | 64 |
| NmuCI | GTSAC | 1 cut(s) | 182 |
| NspV | TTCGAA | 1 cut(s) | 364 |
| PceI | AGGCCT | 1 cut(s) | 76 |
| PctI | GAATGC | 1 cut(s) | 339 |
| PdmI | GAANNNNTTC | 1 cut(s) | 8 |
| PfeI | GAWTC | 1 cut(s) | 366 |
| PkrI | GCNGC | 1 cut(s) | 802 |
| PleI | GAGTC | 1 cut(s) | 103 |
| PpsI | GAGTC | 1 cut(s) | 103 |
| Psp124BI | GAGCTC | 1 cut(s) | 357 |
| PspN4I | GGNNCC | 1 cut(s) | 64 |
| PspPI | GGNCC | 1 cut(s) | 55 |
| RsaI | GTAC | 2 cut(s) | 166, 511 |
| RsaNI | GTAC | 2 cut(s) | 165, 510 |
| RseI | CAYNNNNRTG | 2 cut(s) | 264, 538 |
| SacI | GAGCTC | 1 cut(s) | 357 |
| SaqAI | TTAA | 5 cut(s) | 140, 203, 234, 411, 446 |
| SatI | GCNGC | 1 cut(s) | 801 |
| Sau3AI | GATC | 4 cut(s) | 38, 502, 661, 763 |
| Sau96I | GGNCC | 1 cut(s) | 55 |
| ScaI | AGTACT | 1 cut(s) | 511 |
| SchI | GAGTC | 1 cut(s) | 103 |
| ScrFI | CCNGG | 1 cut(s) | 797 |
| SduI | GDGCHC | 2 cut(s) | 49, 357 |
| SfaNI | GCATC | 2 cut(s) | 262, 844 |
| SfcI | CTRYAG | 1 cut(s) | 375 |
| SfuI | TTCGAA | 1 cut(s) | 364 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 264, 538 |
| Sse9I | AATT | 8 cut(s) | 154, 217, 236, 331, 417, 566, 876, 913 |
| SseBI | AGGCCT | 1 cut(s) | 76 |
| SsiI | CCGC | 1 cut(s) | 27 |
| SspMI | CTAG | 4 cut(s) | 32, 189, 714, 888 |
| SstI | GAGCTC | 1 cut(s) | 357 |
| StuI | AGGCCT | 1 cut(s) | 76 |
| StyD4I | CCNGG | 1 cut(s) | 795 |
| StyI | CCWWGG | 2 cut(s) | 58, 767 |
| TaaI | ACNGT | 5 cut(s) | 169, 379, 477, 514, 645 |
| TaqI | TCGA | 2 cut(s) | 364, 667 |
| TasI | AATT | 8 cut(s) | 154, 217, 236, 331, 417, 566, 876, 913 |
| TatI | WGTACW | 2 cut(s) | 164, 509 |
| TfiI | GAWTC | 1 cut(s) | 366 |
| Tru1I | TTAA | 5 cut(s) | 140, 203, 234, 411, 446 |
| Tru9I | TTAA | 5 cut(s) | 140, 203, 234, 411, 446 |
| TscAI | CASTG | 1 cut(s) | 872 |
| TseFI | GTSAC | 1 cut(s) | 182 |
| TseI | GCWGC | 1 cut(s) | 800 |
| Tsp45I | GTSAC | 1 cut(s) | 182 |
| TspDTI | ATGAA | 6 cut(s) | 17, 287, 332, 429, 579, 734 |
| TspRI | CASTG | 1 cut(s) | 872 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 70 |
| XapI | RAATTY | 3 cut(s) | 217, 236, 331 |
| XbaI | TCTAGA | 1 cut(s) | 713 |
| XmnI | GAANNNNTTC | 1 cut(s) | 8 |
| XspI | CTAG | 4 cut(s) | 32, 189, 714, 888 |
| ZrmI | AGTACT | 1 cut(s) | 511 |