Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 12 |
| AciI | CCGC | 1 cut(s) | 56 |
| AclWI | GGATC | 2 cut(s) | 161, 360 |
| AfaI | GTAC | 3 cut(s) | 112, 118, 358 |
| AgsI | TTSAA | 2 cut(s) | 40, 257 |
| AjnI | CCWGG | 1 cut(s) | 149 |
| AluBI | AGCT | 3 cut(s) | 307, 319, 392 |
| AluI | AGCT | 3 cut(s) | 307, 319, 392 |
| Alw21I | GWGCWC | 1 cut(s) | 274 |
| Alw26I | GTCTC | 1 cut(s) | 68 |
| AlwI | GGATC | 2 cut(s) | 161, 360 |
| Aor13HI | TCCGGA | 1 cut(s) | 12 |
| AoxI | GGCC | 1 cut(s) | 6 |
| ApeKI | GCWGC | 2 cut(s) | 53, 304 |
| AspLEI | GCGC | 1 cut(s) | 403 |
| Bbv12I | GWGCWC | 1 cut(s) | 274 |
| BbvI | GCAGC | 2 cut(s) | 65, 316 |
| BciT130I | CCWGG | 1 cut(s) | 151 |
| BclI | TGATCA | 1 cut(s) | 181 |
| BcoDI | GTCTC | 1 cut(s) | 68 |
| BfaI | CTAG | 1 cut(s) | 421 |
| BisI | GCNGC | 2 cut(s) | 54, 305 |
| BlsI | GCNGC | 2 cut(s) | 55, 306 |
| Bme1390I | CCNGG | 1 cut(s) | 151 |
| BmiI | GGNNCC | 1 cut(s) | 371 |
| BmrFI | CCNGG | 1 cut(s) | 151 |
| BmsI | GCATC | 1 cut(s) | 400 |
| BpmI | CTGGAG | 1 cut(s) | 133 |
| Bpu10I | CCTNAGC | 1 cut(s) | 170 |
| BsaBI | GATNNNNATC | 1 cut(s) | 351 |
| BsaI | GGTCTC | 1 cut(s) | 68 |
| BsaJI | CCNNGG | 1 cut(s) | 291 |
| BsaWI | WCCGGW | 2 cut(s) | 12, 249 |
| Bse118I | RCCGGY | 2 cut(s) | 121, 174 |
| Bse8I | GATNNNNATC | 1 cut(s) | 351 |
| BseAI | TCCGGA | 1 cut(s) | 12 |
| BseBI | CCWGG | 1 cut(s) | 151 |
| BseDI | CCNNGG | 1 cut(s) | 291 |
| BseJI | GATNNNNATC | 1 cut(s) | 351 |
| BseMII | CTCAG | 2 cut(s) | 161, 300 |
| BseXI | GCAGC | 2 cut(s) | 65, 316 |
| BshFI | GGCC | 1 cut(s) | 8 |
| BsiHKAI | GWGCWC | 1 cut(s) | 274 |
| BsiSI | CCGG | 4 cut(s) | 13, 122, 175, 250 |
| BsmAI | GTCTC | 1 cut(s) | 68 |
| BsnI | GGCC | 1 cut(s) | 8 |
| Bso31I | GGTCTC | 1 cut(s) | 68 |
| Bsp1286I | GDGCHC | 1 cut(s) | 274 |
| Bsp13I | TCCGGA | 1 cut(s) | 12 |
| Bsp143I | GATC | 3 cut(s) | 153, 181, 352 |
| BspACI | CCGC | 1 cut(s) | 56 |
| BspANI | GGCC | 1 cut(s) | 8 |
| BspCNI | CTCAG | 2 cut(s) | 162, 299 |
| BspEI | TCCGGA | 1 cut(s) | 12 |
| BspHI | TCATGA | 1 cut(s) | 274 |
| BspLI | GGNNCC | 1 cut(s) | 371 |
| BspPI | GGATC | 2 cut(s) | 161, 360 |
| BspTNI | GGTCTC | 1 cut(s) | 68 |
| BsrFI | RCCGGY | 2 cut(s) | 121, 174 |
| BssAI | RCCGGY | 2 cut(s) | 121, 174 |
| BssECI | CCNNGG | 1 cut(s) | 291 |
| BssMI | GATC | 3 cut(s) | 153, 181, 352 |
| BssT1I | CCWWGG | 1 cut(s) | 291 |
| Bst2UI | CCWGG | 1 cut(s) | 151 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 123 |
| BstDEI | CTNAG | 2 cut(s) | 170, 286 |
| BstHHI | GCGC | 1 cut(s) | 403 |
| BstKTI | GATC | 3 cut(s) | 156, 184, 355 |
| BstMAI | GTCTC | 1 cut(s) | 68 |
| BstMBI | GATC | 3 cut(s) | 153, 181, 352 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 205, 398 |
| BstNI | CCWGG | 1 cut(s) | 151 |
| BstSCI | CCNGG | 1 cut(s) | 149 |
| BstV1I | GCAGC | 2 cut(s) | 65, 316 |
| BsuRI | GGCC | 1 cut(s) | 8 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 123 |
| CciI | TCATGA | 1 cut(s) | 274 |
| CfoI | GCGC | 1 cut(s) | 403 |
| Cfr10I | RCCGGY | 2 cut(s) | 121, 174 |
| Csp6I | GTAC | 3 cut(s) | 111, 117, 357 |
| CviAII | CATG | 2 cut(s) | 72, 275 |
| CviJI | RGCY | 9 cut(s) | 8, 100, 125, 174, 290, 307, 319, 372, 392 |
| CviKI_1 | RGCY | 9 cut(s) | 8, 100, 125, 174, 290, 307, 319, 372, 392 |
| CviQI | GTAC | 3 cut(s) | 111, 117, 357 |
| DdeI | CTNAG | 2 cut(s) | 170, 286 |
| DpnI | GATC | 3 cut(s) | 155, 183, 354 |
| DpnII | GATC | 3 cut(s) | 153, 181, 352 |
| Eco130I | CCWWGG | 1 cut(s) | 291 |
| Eco147I | AGGCCT | 1 cut(s) | 8 |
| Eco31I | GGTCTC | 1 cut(s) | 68 |
| EcoRII | CCWGG | 1 cut(s) | 149 |
| EcoT14I | CCWWGG | 1 cut(s) | 291 |
| ErhI | CCWWGG | 1 cut(s) | 291 |
| FaeI | CATG | 2 cut(s) | 75, 278 |
| FaiI | YATR | 5 cut(s) | 47, 69, 73, 186, 276 |
| FatI | CATG | 2 cut(s) | 71, 274 |
| FauI | CCCGC | 1 cut(s) | 49 |
| FbaI | TGATCA | 1 cut(s) | 181 |
| Fnu4HI | GCNGC | 2 cut(s) | 54, 305 |
| Fsp4HI | GCNGC | 2 cut(s) | 54, 305 |
| FspBI | CTAG | 1 cut(s) | 421 |
| GlaI | GCGC | 1 cut(s) | 402 |
| GluI | GCNGC | 2 cut(s) | 54, 305 |
| GsuI | CTGGAG | 1 cut(s) | 133 |
| HaeIII | GGCC | 1 cut(s) | 8 |
| HapII | CCGG | 4 cut(s) | 13, 122, 175, 250 |
| HhaI | GCGC | 1 cut(s) | 403 |
| Hin1II | CATG | 2 cut(s) | 75, 278 |
| Hin6I | GCGC | 1 cut(s) | 401 |
| HinP1I | GCGC | 1 cut(s) | 401 |
| HindIII | AAGCTT | 1 cut(s) | 317 |
| HinfI | GANTC | 2 cut(s) | 80, 223 |
| HpaII | CCGG | 4 cut(s) | 13, 122, 175, 250 |
| Hpy188I | TCNGA | 4 cut(s) | 28, 181, 228, 369 |
| Hpy188III | TCNNGA | 2 cut(s) | 13, 275 |
| HpyAV | CCTTC | 2 cut(s) | 19, 272 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 304 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 205, 398 |
| HpyF3I | CTNAG | 2 cut(s) | 170, 286 |
| Hsp92II | CATG | 2 cut(s) | 75, 278 |
| HspAI | GCGC | 1 cut(s) | 401 |
| Kpn2I | TCCGGA | 1 cut(s) | 12 |
| KroI | GCCGGC | 1 cut(s) | 121 |
| KroNI | GCCGGC | 1 cut(s) | 123 |
| Ksp22I | TGATCA | 1 cut(s) | 181 |
| Kzo9I | GATC | 3 cut(s) | 153, 181, 352 |
| LmnI | GCTCC | 1 cut(s) | 369 |
| Lsp1109I | GCAGC | 2 cut(s) | 65, 316 |
| LweI | GCATC | 1 cut(s) | 400 |
| MaeI | CTAG | 1 cut(s) | 421 |
| MalI | GATC | 3 cut(s) | 155, 183, 354 |
| MboI | GATC | 3 cut(s) | 153, 181, 352 |
| MboII | GAAGA | 3 cut(s) | 185, 269, 392 |
| MhlI | GDGCHC | 1 cut(s) | 274 |
| MluCI | AATT | 3 cut(s) | 34, 245, 338 |
| MlyI | GAGTC | 1 cut(s) | 232 |
| MnlI | CCTC | 1 cut(s) | 90 |
| MroI | TCCGGA | 1 cut(s) | 12 |
| MroNI | GCCGGC | 1 cut(s) | 121 |
| MseI | TTAA | 1 cut(s) | 321 |
| MspA1I | CMGCKG | 1 cut(s) | 56 |
| MspI | CCGG | 4 cut(s) | 13, 122, 175, 250 |
| MspR9I | CCNGG | 1 cut(s) | 151 |
| MvaI | CCWGG | 1 cut(s) | 151 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 205, 398 |
| NaeI | GCCGGC | 1 cut(s) | 123 |
| NdeII | GATC | 3 cut(s) | 153, 181, 352 |
| NgoMIV | GCCGGC | 1 cut(s) | 121 |
| NlaIII | CATG | 2 cut(s) | 75, 278 |
| NlaIV | GGNNCC | 1 cut(s) | 371 |
| PagI | TCATGA | 1 cut(s) | 274 |
| PceI | AGGCCT | 1 cut(s) | 8 |
| PdiI | GCCGGC | 1 cut(s) | 123 |
| PfeI | GAWTC | 1 cut(s) | 80 |
| PfoI | TCCNGGA | 1 cut(s) | 149 |
| PkrI | GCNGC | 2 cut(s) | 55, 306 |
| PleI | GAGTC | 1 cut(s) | 231 |
| PpsI | GAGTC | 1 cut(s) | 231 |
| Psp6I | CCWGG | 1 cut(s) | 149 |
| PspGI | CCWGG | 1 cut(s) | 149 |
| PspN4I | GGNNCC | 1 cut(s) | 371 |
| RsaI | GTAC | 3 cut(s) | 112, 118, 358 |
| RsaNI | GTAC | 3 cut(s) | 111, 117, 357 |
| SaqAI | TTAA | 1 cut(s) | 321 |
| SatI | GCNGC | 2 cut(s) | 54, 305 |
| Sau3AI | GATC | 3 cut(s) | 153, 181, 352 |
| SchI | GAGTC | 1 cut(s) | 232 |
| ScrFI | CCNGG | 1 cut(s) | 151 |
| SduI | GDGCHC | 1 cut(s) | 274 |
| SetI | ASST | 6 cut(s) | 171, 283, 297, 309, 321, 394 |
| SfaNI | GCATC | 1 cut(s) | 400 |
| Sse9I | AATT | 3 cut(s) | 34, 245, 338 |
| SseBI | AGGCCT | 1 cut(s) | 8 |
| SsiI | CCGC | 1 cut(s) | 56 |
| SspMI | CTAG | 1 cut(s) | 421 |
| StuI | AGGCCT | 1 cut(s) | 8 |
| StyD4I | CCNGG | 1 cut(s) | 149 |
| StyI | CCWWGG | 1 cut(s) | 291 |
| TasI | AATT | 3 cut(s) | 34, 245, 338 |
| TfiI | GAWTC | 1 cut(s) | 80 |
| Tru1I | TTAA | 1 cut(s) | 321 |
| Tru9I | TTAA | 1 cut(s) | 321 |
| TseI | GCWGC | 2 cut(s) | 53, 304 |
| TspDTI | ATGAA | 1 cut(s) | 291 |
| XspI | CTAG | 1 cut(s) | 421 |