ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Med20 | PF08612 | 1 - 207 | 4.9e-54 | TATA-binding related factor (TRF) of subunit 20 of Mediator complex |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 236 |
| Acc36I | ACCTGC | 1 cut(s) | 70 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 554 |
| AccI | GTMKAC | 1 cut(s) | 581 |
| AccII | CGCG | 1 cut(s) | 184 |
| AciI | CCGC | 3 cut(s) | 5, 182, 245 |
| AclWI | GGATC | 1 cut(s) | 504 |
| AcsI | RAATTY | 1 cut(s) | 403 |
| AdeI | CACNNNGTG | 1 cut(s) | 535 |
| AfaI | GTAC | 2 cut(s) | 227, 434 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 38, 39, 554 |
| AgsI | TTSAA | 3 cut(s) | 263, 344, 450 |
| AjnI | CCWGG | 1 cut(s) | 523 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 537, 569 |
| AluBI | AGCT | 1 cut(s) | 266 |
| AluI | AGCT | 1 cut(s) | 266 |
| Alw26I | GTCTC | 2 cut(s) | 325, 567 |
| AlwI | GGATC | 1 cut(s) | 504 |
| AoxI | GGCC | 2 cut(s) | 526, 565 |
| ApeKI | GCWGC | 2 cut(s) | 214, 611 |
| ApoI | RAATTY | 1 cut(s) | 403 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 303, 335 |
| AsuHPI | GGTGA | 2 cut(s) | 61, 569 |
| BbvI | GCAGC | 2 cut(s) | 226, 598 |
| BccI | CCATC | 2 cut(s) | 111, 137 |
| BceAI | ACGGC | 1 cut(s) | 584 |
| BciT130I | CCWGG | 1 cut(s) | 525 |
| BcoDI | GTCTC | 2 cut(s) | 325, 567 |
| BfaI | CTAG | 1 cut(s) | 353 |
| BfmI | CTRYAG | 1 cut(s) | 299 |
| BfuAI | ACCTGC | 1 cut(s) | 70 |
| BisI | GCNGC | 3 cut(s) | 5, 215, 612 |
| BlsI | GCNGC | 3 cut(s) | 6, 216, 613 |
| BmcAI | AGTACT | 1 cut(s) | 227 |
| Bme1390I | CCNGG | 1 cut(s) | 525 |
| BmiI | GGNNCC | 1 cut(s) | 546 |
| BmrFI | CCNGG | 1 cut(s) | 525 |
| BmsI | GCATC | 1 cut(s) | 102 |
| BsaI | GGTCTC | 2 cut(s) | 325, 567 |
| BsaJI | CCNNGG | 1 cut(s) | 568 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 416, 446 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 38, 39, 554 |
| Bse1I | ACTGG | 1 cut(s) | 577 |
| BseBI | CCWGG | 1 cut(s) | 525 |
| BseDI | CCNNGG | 1 cut(s) | 568 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 38, 39, 554 |
| BseMII | CTCAG | 1 cut(s) | 390 |
| BseNI | ACTGG | 1 cut(s) | 577 |
| BseXI | GCAGC | 2 cut(s) | 226, 598 |
| Bsh1236I | CGCG | 1 cut(s) | 184 |
| Bsh1285I | CGRYCG | 2 cut(s) | 245, 639 |
| BshFI | GGCC | 2 cut(s) | 528, 567 |
| BsiEI | CGRYCG | 2 cut(s) | 245, 639 |
| BslFI | GGGAC | 2 cut(s) | 55, 371 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 38, 39, 554 |
| BsmAI | GTCTC | 2 cut(s) | 325, 567 |
| BsmFI | GGGAC | 2 cut(s) | 55, 371 |
| BsnI | GGCC | 2 cut(s) | 528, 567 |
| Bso31I | GGTCTC | 2 cut(s) | 325, 567 |
| Bsp143I | GATC | 2 cut(s) | 60, 496 |
| BspACI | CCGC | 3 cut(s) | 5, 182, 245 |
| BspANI | GGCC | 2 cut(s) | 528, 567 |
| BspCNI | CTCAG | 1 cut(s) | 391 |
| BspFNI | CGCG | 1 cut(s) | 184 |
| BspLI | GGNNCC | 1 cut(s) | 546 |
| BspMAI | CTGCAG | 1 cut(s) | 303 |
| BspMI | ACCTGC | 1 cut(s) | 70 |
| BspPI | GGATC | 1 cut(s) | 504 |
| BspTNI | GGTCTC | 2 cut(s) | 325, 567 |
| BsrI | ACTGG | 1 cut(s) | 577 |
| BssECI | CCNNGG | 1 cut(s) | 568 |
| BssMI | GATC | 2 cut(s) | 60, 496 |
| BssNAI | GTATAC | 1 cut(s) | 582 |
| BssT1I | CCWWGG | 1 cut(s) | 568 |
| Bst1107I | GTATAC | 1 cut(s) | 582 |
| Bst2UI | CCWGG | 1 cut(s) | 525 |
| Bst4CI | ACNGT | 3 cut(s) | 49, 56, 640 |
| Bst6I | CTCTTC | 1 cut(s) | 471 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 649 |
| BstC8I | GCNNGC | 1 cut(s) | 645 |
| BstDEI | CTNAG | 1 cut(s) | 399 |
| BstFNI | CGCG | 1 cut(s) | 184 |
| BstKTI | GATC | 2 cut(s) | 63, 499 |
| BstMAI | GTCTC | 2 cut(s) | 325, 567 |
| BstMBI | GATC | 2 cut(s) | 60, 496 |
| BstMCI | CGRYCG | 2 cut(s) | 245, 639 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 157, 214, 620, 649 |
| BstNI | CCWGG | 1 cut(s) | 525 |
| BstSCI | CCNGG | 1 cut(s) | 523 |
| BstSFI | CTRYAG | 1 cut(s) | 299 |
| BstUI | CGCG | 1 cut(s) | 184 |
| BstV1I | GCAGC | 2 cut(s) | 226, 598 |
| BstZ17I | GTATAC | 1 cut(s) | 582 |
| BsuRI | GGCC | 2 cut(s) | 528, 567 |
| BtsI | GCAGTG | 3 cut(s) | 203, 594, 654 |
| BtsIMutI | CAGTG | 3 cut(s) | 203, 594, 654 |
| BveI | ACCTGC | 1 cut(s) | 70 |
| Cac8I | GCNNGC | 1 cut(s) | 645 |
| Csp6I | GTAC | 2 cut(s) | 226, 433 |
| CviAII | CATG | 1 cut(s) | 472 |
| CviJI | RGCY | 7 cut(s) | 125, 217, 266, 503, 528, 567, 623 |
| CviKI_1 | RGCY | 7 cut(s) | 125, 217, 266, 503, 528, 567, 623 |
| CviQI | GTAC | 2 cut(s) | 226, 433 |
| DdeI | CTNAG | 1 cut(s) | 399 |
| DpnI | GATC | 2 cut(s) | 62, 498 |
| DpnII | GATC | 2 cut(s) | 60, 496 |
| DraIII | CACNNNGTG | 1 cut(s) | 535 |
| Eam1104I | CTCTTC | 1 cut(s) | 471 |
| EarI | CTCTTC | 1 cut(s) | 471 |
| Eco130I | CCWWGG | 1 cut(s) | 568 |
| Eco31I | GGTCTC | 2 cut(s) | 325, 567 |
| EcoRII | CCWGG | 1 cut(s) | 523 |
| EcoT14I | CCWWGG | 1 cut(s) | 568 |
| ErhI | CCWWGG | 1 cut(s) | 568 |
| FaeI | CATG | 1 cut(s) | 475 |
| FaqI | GGGAC | 2 cut(s) | 55, 371 |
| FatI | CATG | 1 cut(s) | 471 |
| FauI | CCCGC | 1 cut(s) | 189 |
| FauNDI | CATATG | 2 cut(s) | 491, 540 |
| FblI | GTMKAC | 1 cut(s) | 581 |
| Fnu4HI | GCNGC | 3 cut(s) | 5, 215, 612 |
| Fsp4HI | GCNGC | 3 cut(s) | 5, 215, 612 |
| FspBI | CTAG | 1 cut(s) | 353 |
| GluI | GCNGC | 3 cut(s) | 5, 215, 612 |
| HaeIII | GGCC | 2 cut(s) | 528, 567 |
| Hin1II | CATG | 1 cut(s) | 475 |
| HinfI | GANTC | 2 cut(s) | 269, 391 |
| HphI | GGTGA | 2 cut(s) | 61, 569 |
| Hpy166II | GTNNAC | 2 cut(s) | 52, 582 |
| Hpy188I | TCNGA | 3 cut(s) | 60, 242, 400 |
| Hpy188III | TCNNGA | 3 cut(s) | 155, 260, 388 |
| Hpy8I | GTNNAC | 2 cut(s) | 52, 582 |
| Hpy99I | CGWCG | 1 cut(s) | 49 |
| HpyAV | CCTTC | 1 cut(s) | 104 |
| HpyCH4III | ACNGT | 3 cut(s) | 49, 56, 640 |
| HpyCH4V | TGCA | 7 cut(s) | 22, 38, 203, 301, 538, 643, 652 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 157, 214, 620, 649 |
| HpyF3I | CTNAG | 1 cut(s) | 399 |
| Hsp92II | CATG | 1 cut(s) | 475 |
| Kzo9I | GATC | 2 cut(s) | 60, 496 |
| LpnPI | CCDG | 8 cut(s) | 24, 65, 161, 222, 485, 510, 537, 590 |
| Lsp1109I | GCAGC | 2 cut(s) | 226, 598 |
| LweI | GCATC | 1 cut(s) | 102 |
| MaeI | CTAG | 1 cut(s) | 353 |
| MaeIII | GTNAC | 1 cut(s) | 73 |
| MalI | GATC | 2 cut(s) | 62, 498 |
| MboI | GATC | 2 cut(s) | 60, 496 |
| MboII | GAAGA | 2 cut(s) | 438, 488 |
| MfeI | CAATTG | 1 cut(s) | 365 |
| MluCI | AATT | 5 cut(s) | 328, 365, 403, 630, 661 |
| MmeI | TCCRAC | 1 cut(s) | 265 |
| MnlI | CCTC | 4 cut(s) | 309, 328, 404, 418 |
| MseI | TTAA | 2 cut(s) | 105, 327 |
| MspR9I | CCNGG | 1 cut(s) | 525 |
| MunI | CAATTG | 1 cut(s) | 365 |
| MvaI | CCWGG | 1 cut(s) | 525 |
| MvnI | CGCG | 1 cut(s) | 184 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 157, 214, 620, 649 |
| NdeI | CATATG | 2 cut(s) | 491, 540 |
| NdeII | GATC | 2 cut(s) | 60, 496 |
| NlaIII | CATG | 1 cut(s) | 475 |
| NlaIV | GGNNCC | 1 cut(s) | 546 |
| NmuCI | GTSAC | 1 cut(s) | 73 |
| PfeI | GAWTC | 2 cut(s) | 269, 391 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 554 |
| PkrI | GCNGC | 3 cut(s) | 6, 216, 613 |
| PsiI | TTATAA | 1 cut(s) | 236 |
| Psp6I | CCWGG | 1 cut(s) | 523 |
| PspGI | CCWGG | 1 cut(s) | 523 |
| PspN4I | GGNNCC | 1 cut(s) | 546 |
| PstI | CTGCAG | 1 cut(s) | 303 |
| RsaI | GTAC | 2 cut(s) | 227, 434 |
| RsaNI | GTAC | 2 cut(s) | 226, 433 |
| SaqAI | TTAA | 2 cut(s) | 105, 327 |
| SatI | GCNGC | 3 cut(s) | 5, 215, 612 |
| Sau3AI | GATC | 2 cut(s) | 60, 496 |
| ScaI | AGTACT | 1 cut(s) | 227 |
| ScrFI | CCNGG | 1 cut(s) | 525 |
| SetI | ASST | 5 cut(s) | 84, 234, 268, 429, 438 |
| SfaNI | GCATC | 1 cut(s) | 102 |
| SfcI | CTRYAG | 1 cut(s) | 299 |
| Sse9I | AATT | 5 cut(s) | 328, 365, 403, 630, 661 |
| SsiI | CCGC | 3 cut(s) | 5, 182, 245 |
| SspMI | CTAG | 1 cut(s) | 353 |
| StyD4I | CCNGG | 1 cut(s) | 523 |
| StyI | CCWWGG | 1 cut(s) | 568 |
| TaaI | ACNGT | 3 cut(s) | 49, 56, 640 |
| TaqI | TCGA | 2 cut(s) | 154, 509 |
| TasI | AATT | 5 cut(s) | 328, 365, 403, 630, 661 |
| TatI | WGTACW | 1 cut(s) | 225 |
| TauI | GCSGC | 1 cut(s) | 7 |
| TfiI | GAWTC | 2 cut(s) | 269, 391 |
| Tru1I | TTAA | 2 cut(s) | 105, 327 |
| Tru9I | TTAA | 2 cut(s) | 105, 327 |
| TscAI | CASTG | 3 cut(s) | 210, 601, 654 |
| TseFI | GTSAC | 1 cut(s) | 73 |
| TseI | GCWGC | 2 cut(s) | 214, 611 |
| Tsp45I | GTSAC | 1 cut(s) | 73 |
| TspRI | CASTG | 3 cut(s) | 210, 601, 654 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 554 |
| XapI | RAATTY | 1 cut(s) | 403 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 448 |
| XmiI | GTMKAC | 1 cut(s) | 581 |
| XspI | CTAG | 1 cut(s) | 353 |
| ZrmI | AGTACT | 1 cut(s) | 227 |