ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 829 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 439 |
| AccI | GTMKAC | 1 cut(s) | 382 |
| AciI | CCGC | 1 cut(s) | 775 |
| AclWI | GGATC | 2 cut(s) | 464, 509 |
| AcoI | YGGCCR | 1 cut(s) | 430 |
| AcuI | CTGAAG | 3 cut(s) | 330, 510, 740 |
| AfaI | GTAC | 2 cut(s) | 401, 753 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 404, 439, 700 |
| AjnI | CCWGG | 2 cut(s) | 517, 807 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 303, 335 |
| AluBI | AGCT | 8 cut(s) | 137, 160, 235, 344, 413, 476, 539, 578 |
| AluI | AGCT | 8 cut(s) | 137, 160, 235, 344, 413, 476, 539, 578 |
| Alw21I | GWGCWC | 1 cut(s) | 718 |
| Alw26I | GTCTC | 2 cut(s) | 346, 623 |
| AlwI | GGATC | 2 cut(s) | 464, 509 |
| AoxI | GGCC | 3 cut(s) | 407, 430, 488 |
| ApeKI | GCWGC | 1 cut(s) | 150 |
| AseI | ATTAAT | 1 cut(s) | 765 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 248, 792 |
| AspS9I | GGNCC | 3 cut(s) | 170, 266, 407 |
| AsuC2I | CCSGG | 1 cut(s) | 270 |
| AsuHPI | GGTGA | 1 cut(s) | 658 |
| AvaII | GGWCC | 2 cut(s) | 170, 266 |
| BalI | TGGCCA | 1 cut(s) | 432 |
| Bbv12I | GWGCWC | 1 cut(s) | 718 |
| BbvI | GCAGC | 1 cut(s) | 137 |
| BccI | CCATC | 1 cut(s) | 140 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 794, 828 |
| BciT130I | CCWGG | 2 cut(s) | 519, 809 |
| BcnI | CCSGG | 1 cut(s) | 270 |
| BcoDI | GTCTC | 2 cut(s) | 346, 623 |
| BfaI | CTAG | 1 cut(s) | 477 |
| BfuAI | ACCTGC | 1 cut(s) | 829 |
| BisI | GCNGC | 1 cut(s) | 151 |
| BlsI | GCNGC | 1 cut(s) | 152 |
| Bme1390I | CCNGG | 3 cut(s) | 270, 519, 809 |
| Bme18I | GGWCC | 2 cut(s) | 170, 266 |
| BmgT120I | GGNCC | 3 cut(s) | 170, 266, 407 |
| BmiI | GGNNCC | 1 cut(s) | 692 |
| BmrFI | CCNGG | 3 cut(s) | 270, 519, 809 |
| BmsI | GCATC | 2 cut(s) | 218, 802 |
| BpmI | CTGGAG | 1 cut(s) | 461 |
| Bpu10I | CCTNAGC | 1 cut(s) | 215 |
| BpuMI | CCSGG | 1 cut(s) | 270 |
| BsaBI | GATNNNNATC | 1 cut(s) | 116 |
| BsaJI | CCNNGG | 2 cut(s) | 518, 581 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 404, 439, 700 |
| Bse8I | GATNNNNATC | 1 cut(s) | 116 |
| BseBI | CCWGG | 2 cut(s) | 519, 809 |
| BseDI | CCNNGG | 2 cut(s) | 518, 581 |
| BseGI | GGATG | 2 cut(s) | 682, 817 |
| BseJI | GATNNNNATC | 1 cut(s) | 116 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 404, 439, 700 |
| BseMII | CTCAG | 2 cut(s) | 229, 359 |
| BseXI | GCAGC | 1 cut(s) | 137 |
| BshFI | GGCC | 3 cut(s) | 409, 432, 490 |
| BsiHKAI | GWGCWC | 1 cut(s) | 718 |
| BsiSI | CCGG | 1 cut(s) | 269 |
| BslFI | GGGAC | 1 cut(s) | 299 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 404, 439, 700 |
| BsmAI | GTCTC | 2 cut(s) | 346, 623 |
| BsmBI | CGTCTC | 1 cut(s) | 346 |
| BsmFI | GGGAC | 1 cut(s) | 299 |
| BsnI | GGCC | 3 cut(s) | 409, 432, 490 |
| Bsp1286I | GDGCHC | 1 cut(s) | 718 |
| Bsp143I | GATC | 2 cut(s) | 469, 514 |
| BspACI | CCGC | 1 cut(s) | 775 |
| BspANI | GGCC | 3 cut(s) | 409, 432, 490 |
| BspCNI | CTCAG | 2 cut(s) | 228, 358 |
| BspLI | GGNNCC | 1 cut(s) | 692 |
| BspMI | ACCTGC | 1 cut(s) | 829 |
| BspPI | GGATC | 2 cut(s) | 464, 509 |
| BssECI | CCNNGG | 2 cut(s) | 518, 581 |
| BssMI | GATC | 2 cut(s) | 469, 514 |
| BssT1I | CCWWGG | 1 cut(s) | 581 |
| Bst2UI | CCWGG | 2 cut(s) | 519, 809 |
| Bst4CI | ACNGT | 1 cut(s) | 695 |
| BstC8I | GCNNGC | 4 cut(s) | 135, 162, 411, 663 |
| BstDEI | CTNAG | 6 cut(s) | 154, 215, 345, 403, 535, 756 |
| BstEII | GGTNACC | 1 cut(s) | 197 |
| BstF5I | GGATG | 2 cut(s) | 682, 817 |
| BstKTI | GATC | 2 cut(s) | 472, 517 |
| BstMAI | GTCTC | 2 cut(s) | 346, 623 |
| BstMBI | GATC | 2 cut(s) | 469, 514 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 496, 505 |
| BstNI | CCWGG | 2 cut(s) | 519, 809 |
| BstPI | GGTNACC | 1 cut(s) | 197 |
| BstSCI | CCNGG | 3 cut(s) | 268, 517, 807 |
| BstV1I | GCAGC | 1 cut(s) | 137 |
| BsuRI | GGCC | 3 cut(s) | 409, 432, 490 |
| BtgZI | GCGATG | 1 cut(s) | 195 |
| BtsCI | GGATG | 2 cut(s) | 682, 817 |
| BtsIMutI | CAGTG | 1 cut(s) | 830 |
| BveI | ACCTGC | 1 cut(s) | 829 |
| Cac8I | GCNNGC | 4 cut(s) | 135, 162, 411, 663 |
| Cfr13I | GGNCC | 3 cut(s) | 170, 266, 407 |
| CpoI | CGGWCCG | 1 cut(s) | 266 |
| CseI | GACGC | 1 cut(s) | 215 |
| Csp6I | GTAC | 2 cut(s) | 400, 752 |
| CspI | CGGWCCG | 1 cut(s) | 266 |
| CviAII | CATG | 1 cut(s) | 500 |
| CviQI | GTAC | 2 cut(s) | 400, 752 |
| DdeI | CTNAG | 6 cut(s) | 154, 215, 345, 403, 535, 756 |
| DpnI | GATC | 2 cut(s) | 471, 516 |
| DpnII | GATC | 2 cut(s) | 469, 514 |
| DraI | TTTAAA | 1 cut(s) | 607 |
| EaeI | YGGCCR | 1 cut(s) | 430 |
| Eco130I | CCWWGG | 1 cut(s) | 581 |
| Eco32I | GATATC | 1 cut(s) | 118 |
| Eco47I | GGWCC | 2 cut(s) | 170, 266 |
| Eco57I | CTGAAG | 3 cut(s) | 330, 510, 740 |
| Eco91I | GGTNACC | 1 cut(s) | 197 |
| EcoO65I | GGTNACC | 1 cut(s) | 197 |
| EcoRII | CCWGG | 2 cut(s) | 517, 807 |
| EcoRV | GATATC | 1 cut(s) | 118 |
| EcoT14I | CCWWGG | 1 cut(s) | 581 |
| ErhI | CCWWGG | 1 cut(s) | 581 |
| Esp3I | CGTCTC | 1 cut(s) | 346 |
| FaeI | CATG | 1 cut(s) | 503 |
| FaiI | YATR | 7 cut(s) | 30, 195, 260, 485, 501, 510, 682 |
| FaqI | GGGAC | 1 cut(s) | 299 |
| FatI | CATG | 1 cut(s) | 499 |
| FblI | GTMKAC | 1 cut(s) | 382 |
| Fnu4HI | GCNGC | 1 cut(s) | 151 |
| FokI | GGATG | 2 cut(s) | 689, 824 |
| Fsp4HI | GCNGC | 1 cut(s) | 151 |
| FspBI | CTAG | 1 cut(s) | 477 |
| GluI | GCNGC | 1 cut(s) | 151 |
| GsuI | CTGGAG | 1 cut(s) | 461 |
| HaeIII | GGCC | 3 cut(s) | 409, 432, 490 |
| HapII | CCGG | 1 cut(s) | 269 |
| HgaI | GACGC | 1 cut(s) | 215 |
| Hin1II | CATG | 1 cut(s) | 503 |
| HpaII | CCGG | 1 cut(s) | 269 |
| HphI | GGTGA | 1 cut(s) | 658 |
| Hpy166II | GTNNAC | 1 cut(s) | 383 |
| Hpy188I | TCNGA | 4 cut(s) | 310, 348, 529, 720 |
| Hpy188III | TCNNGA | 3 cut(s) | 374, 440, 745 |
| Hpy8I | GTNNAC | 1 cut(s) | 383 |
| HpyAV | CCTTC | 4 cut(s) | 59, 551, 715, 828 |
| HpyCH4III | ACNGT | 1 cut(s) | 695 |
| HpyCH4IV | ACGT | 1 cut(s) | 355 |
| HpyCH4V | TGCA | 4 cut(s) | 32, 44, 499, 671 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 496, 505 |
| HpyF3I | CTNAG | 6 cut(s) | 154, 215, 345, 403, 535, 756 |
| HpySE526I | ACGT | 1 cut(s) | 355 |
| Hsp92II | CATG | 1 cut(s) | 503 |
| Kzo9I | GATC | 2 cut(s) | 469, 514 |
| LmnI | GCTCC | 2 cut(s) | 232, 583 |
| Lsp1109I | GCAGC | 1 cut(s) | 137 |
| LweI | GCATC | 2 cut(s) | 218, 802 |
| MaeI | CTAG | 1 cut(s) | 477 |
| MaeII | ACGT | 1 cut(s) | 355 |
| MaeIII | GTNAC | 2 cut(s) | 197, 415 |
| MalI | GATC | 2 cut(s) | 471, 516 |
| MboI | GATC | 2 cut(s) | 469, 514 |
| MboII | GAAGA | 4 cut(s) | 17, 109, 121, 256 |
| MhlI | GDGCHC | 1 cut(s) | 718 |
| MlsI | TGGCCA | 1 cut(s) | 432 |
| MluCI | AATT | 3 cut(s) | 762, 766, 782 |
| MluNI | TGGCCA | 1 cut(s) | 432 |
| MmeI | TCCRAC | 2 cut(s) | 74, 759 |
| MnlI | CCTC | 3 cut(s) | 234, 634, 727 |
| Mox20I | TGGCCA | 1 cut(s) | 432 |
| MroXI | GAANNNNTTC | 2 cut(s) | 248, 792 |
| MscI | TGGCCA | 1 cut(s) | 432 |
| MseI | TTAA | 6 cut(s) | 291, 465, 549, 606, 765, 843 |
| MslI | CAYNNNNRTG | 1 cut(s) | 144 |
| Msp20I | TGGCCA | 1 cut(s) | 432 |
| MspA1I | CMGCKG | 1 cut(s) | 413 |
| MspI | CCGG | 1 cut(s) | 269 |
| MspR9I | CCNGG | 3 cut(s) | 270, 519, 809 |
| MssI | GTTTAAAC | 1 cut(s) | 607 |
| MvaI | CCWGG | 2 cut(s) | 519, 809 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 496, 505 |
| NciI | CCSGG | 1 cut(s) | 270 |
| NdeII | GATC | 2 cut(s) | 469, 514 |
| NlaIII | CATG | 1 cut(s) | 503 |
| NlaIV | GGNNCC | 1 cut(s) | 692 |
| PdmI | GAANNNNTTC | 2 cut(s) | 248, 792 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 439 |
| PkrI | GCNGC | 1 cut(s) | 152 |
| PmeI | GTTTAAAC | 1 cut(s) | 607 |
| PshBI | ATTAAT | 1 cut(s) | 765 |
| Psp6I | CCWGG | 2 cut(s) | 517, 807 |
| PspEI | GGTNACC | 1 cut(s) | 197 |
| PspGI | CCWGG | 2 cut(s) | 517, 807 |
| PspN4I | GGNNCC | 1 cut(s) | 692 |
| PspPI | GGNCC | 3 cut(s) | 170, 266, 407 |
| PvuII | CAGCTG | 1 cut(s) | 413 |
| RsaI | GTAC | 2 cut(s) | 401, 753 |
| RsaNI | GTAC | 2 cut(s) | 400, 752 |
| RseI | CAYNNNNRTG | 1 cut(s) | 144 |
| Rsr2I | CGGWCCG | 1 cut(s) | 266 |
| RsrII | CGGWCCG | 1 cut(s) | 266 |
| SaqAI | TTAA | 6 cut(s) | 291, 465, 549, 606, 765, 843 |
| SatI | GCNGC | 1 cut(s) | 151 |
| Sau3AI | GATC | 2 cut(s) | 469, 514 |
| Sau96I | GGNCC | 3 cut(s) | 170, 266, 407 |
| ScrFI | CCNGG | 3 cut(s) | 270, 519, 809 |
| SduI | GDGCHC | 1 cut(s) | 718 |
| SfaNI | GCATC | 2 cut(s) | 218, 802 |
| SinI | GGWCC | 2 cut(s) | 170, 266 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 144 |
| Sse9I | AATT | 3 cut(s) | 762, 766, 782 |
| SsiI | CCGC | 1 cut(s) | 775 |
| SspMI | CTAG | 1 cut(s) | 477 |
| StyD4I | CCNGG | 3 cut(s) | 268, 517, 807 |
| StyI | CCWWGG | 1 cut(s) | 581 |
| TaaI | ACNGT | 1 cut(s) | 695 |
| TaiI | ACGT | 1 cut(s) | 358 |
| TaqI | TCGA | 1 cut(s) | 425 |
| TasI | AATT | 3 cut(s) | 762, 766, 782 |
| Tru1I | TTAA | 6 cut(s) | 291, 465, 549, 606, 765, 843 |
| Tru9I | TTAA | 6 cut(s) | 291, 465, 549, 606, 765, 843 |
| TscAI | CASTG | 1 cut(s) | 830 |
| TseI | GCWGC | 1 cut(s) | 150 |
| TspGWI | ACGGA | 3 cut(s) | 279, 387, 569 |
| TspRI | CASTG | 1 cut(s) | 830 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 439 |
| VpaK11BI | GGWCC | 2 cut(s) | 170, 266 |
| VspI | ATTAAT | 1 cut(s) | 765 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 417 |
| XmiI | GTMKAC | 1 cut(s) | 382 |
| XmnI | GAANNNNTTC | 2 cut(s) | 248, 792 |
| XspI | CTAG | 1 cut(s) | 477 |