ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 50 |
| Acc16I | TGCGCA | 1 cut(s) | 69 |
| AclWI | GGATC | 1 cut(s) | 129 |
| AcyI | GRCGYC | 1 cut(s) | 194 |
| AgsI | TTSAA | 1 cut(s) | 146 |
| AluBI | AGCT | 3 cut(s) | 7, 100, 401 |
| AluI | AGCT | 3 cut(s) | 7, 100, 401 |
| Alw26I | GTCTC | 2 cut(s) | 311, 335 |
| AlwI | GGATC | 1 cut(s) | 129 |
| AoxI | GGCC | 1 cut(s) | 429 |
| ApeKI | GCWGC | 1 cut(s) | 207 |
| AspLEI | GCGC | 1 cut(s) | 70 |
| AspS9I | GGNCC | 1 cut(s) | 252 |
| AsuC2I | CCSGG | 1 cut(s) | 139 |
| AsuHPI | GGTGA | 1 cut(s) | 173 |
| AvaII | GGWCC | 1 cut(s) | 252 |
| BbvI | GCAGC | 1 cut(s) | 194 |
| BccI | CCATC | 2 cut(s) | 152, 267 |
| BcnI | CCSGG | 1 cut(s) | 139 |
| BcoDI | GTCTC | 2 cut(s) | 311, 335 |
| BfaI | CTAG | 1 cut(s) | 338 |
| BfmI | CTRYAG | 1 cut(s) | 208 |
| BglII | AGATCT | 1 cut(s) | 391 |
| BisI | GCNGC | 1 cut(s) | 208 |
| BlsI | GCNGC | 1 cut(s) | 209 |
| Bme1390I | CCNGG | 1 cut(s) | 139 |
| Bme18I | GGWCC | 1 cut(s) | 252 |
| BmgT120I | GGNCC | 1 cut(s) | 252 |
| BmrFI | CCNGG | 1 cut(s) | 139 |
| BmsI | GCATC | 1 cut(s) | 55 |
| BpmI | CTGGAG | 1 cut(s) | 145 |
| BpuMI | CCSGG | 1 cut(s) | 139 |
| BsaHI | GRCGYC | 1 cut(s) | 194 |
| BsaI | GGTCTC | 1 cut(s) | 335 |
| BsaWI | WCCGGW | 1 cut(s) | 165 |
| Bse1I | ACTGG | 1 cut(s) | 128 |
| BseGI | GGATG | 2 cut(s) | 31, 259 |
| BseNI | ACTGG | 1 cut(s) | 128 |
| BseRI | GAGGAG | 1 cut(s) | 392 |
| BseXI | GCAGC | 1 cut(s) | 194 |
| BshFI | GGCC | 1 cut(s) | 431 |
| BsiSI | CCGG | 2 cut(s) | 139, 166 |
| BsmAI | GTCTC | 2 cut(s) | 311, 335 |
| BsnI | GGCC | 1 cut(s) | 431 |
| Bso31I | GGTCTC | 1 cut(s) | 335 |
| Bsp143I | GATC | 3 cut(s) | 28, 134, 391 |
| BspANI | GGCC | 1 cut(s) | 431 |
| BspMAI | CTGCAG | 1 cut(s) | 212 |
| BspPI | GGATC | 1 cut(s) | 129 |
| BspTNI | GGTCTC | 1 cut(s) | 335 |
| BsrI | ACTGG | 1 cut(s) | 128 |
| BssMI | GATC | 3 cut(s) | 28, 134, 391 |
| BssNI | GRCGYC | 1 cut(s) | 194 |
| Bst4CI | ACNGT | 1 cut(s) | 322 |
| BstACI | GRCGYC | 1 cut(s) | 194 |
| BstEII | GGTNACC | 1 cut(s) | 161 |
| BstF5I | GGATG | 2 cut(s) | 31, 259 |
| BstHHI | GCGC | 1 cut(s) | 70 |
| BstKTI | GATC | 3 cut(s) | 31, 137, 394 |
| BstMAI | GTCTC | 2 cut(s) | 311, 335 |
| BstMBI | GATC | 3 cut(s) | 28, 134, 391 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 74 |
| BstPI | GGTNACC | 1 cut(s) | 161 |
| BstSCI | CCNGG | 1 cut(s) | 137 |
| BstSFI | CTRYAG | 1 cut(s) | 208 |
| BstV1I | GCAGC | 1 cut(s) | 194 |
| BstX2I | RGATCY | 1 cut(s) | 391 |
| BstYI | RGATCY | 1 cut(s) | 391 |
| BsuRI | GGCC | 1 cut(s) | 431 |
| BtsCI | GGATG | 2 cut(s) | 31, 259 |
| CfoI | GCGC | 1 cut(s) | 70 |
| Cfr13I | GGNCC | 1 cut(s) | 252 |
| CseI | GACGC | 1 cut(s) | 183 |
| CviAII | CATG | 1 cut(s) | 358 |
| CviJI | RGCY | 4 cut(s) | 7, 100, 401, 431 |
| CviKI_1 | RGCY | 4 cut(s) | 7, 100, 401, 431 |
| DpnI | GATC | 3 cut(s) | 30, 136, 393 |
| DpnII | GATC | 3 cut(s) | 28, 134, 391 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 50 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 50 |
| Eco147I | AGGCCT | 1 cut(s) | 431 |
| Eco31I | GGTCTC | 1 cut(s) | 335 |
| Eco47I | GGWCC | 1 cut(s) | 252 |
| Eco91I | GGTNACC | 1 cut(s) | 161 |
| EcoO65I | GGTNACC | 1 cut(s) | 161 |
| FaeI | CATG | 1 cut(s) | 361 |
| FaiI | YATR | 6 cut(s) | 11, 35, 186, 297, 359, 408 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 416 |
| FatI | CATG | 1 cut(s) | 357 |
| Fnu4HI | GCNGC | 1 cut(s) | 208 |
| FokI | GGATG | 2 cut(s) | 38, 246 |
| Fsp4HI | GCNGC | 1 cut(s) | 208 |
| FspBI | CTAG | 1 cut(s) | 338 |
| FspI | TGCGCA | 1 cut(s) | 69 |
| GlaI | GCGC | 1 cut(s) | 69 |
| GluI | GCNGC | 1 cut(s) | 208 |
| GsuI | CTGGAG | 1 cut(s) | 145 |
| HaeIII | GGCC | 1 cut(s) | 431 |
| HapII | CCGG | 2 cut(s) | 139, 166 |
| HgaI | GACGC | 1 cut(s) | 183 |
| HhaI | GCGC | 1 cut(s) | 70 |
| Hin1I | GRCGYC | 1 cut(s) | 194 |
| Hin1II | CATG | 1 cut(s) | 361 |
| Hin6I | GCGC | 1 cut(s) | 68 |
| HinP1I | GCGC | 1 cut(s) | 68 |
| HindIII | AAGCTT | 1 cut(s) | 5 |
| HinfI | GANTC | 3 cut(s) | 94, 142, 214 |
| HpaII | CCGG | 2 cut(s) | 139, 166 |
| HphI | GGTGA | 1 cut(s) | 173 |
| Hpy188I | TCNGA | 4 cut(s) | 93, 316, 351, 418 |
| Hpy188III | TCNNGA | 2 cut(s) | 338, 424 |
| HpyAV | CCTTC | 3 cut(s) | 67, 183, 421 |
| HpyCH4III | ACNGT | 1 cut(s) | 322 |
| HpyCH4V | TGCA | 2 cut(s) | 210, 361 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 74 |
| Hsp92I | GRCGYC | 1 cut(s) | 194 |
| Hsp92II | CATG | 1 cut(s) | 361 |
| HspAI | GCGC | 1 cut(s) | 68 |
| Kzo9I | GATC | 3 cut(s) | 28, 134, 391 |
| LpnPI | CCDG | 4 cut(s) | 109, 152, 179, 196 |
| Lsp1109I | GCAGC | 1 cut(s) | 194 |
| LweI | GCATC | 1 cut(s) | 55 |
| MaeI | CTAG | 1 cut(s) | 338 |
| MaeIII | GTNAC | 4 cut(s) | 52, 150, 161, 370 |
| MalI | GATC | 3 cut(s) | 30, 136, 393 |
| MboI | GATC | 3 cut(s) | 28, 134, 391 |
| MflI | RGATCY | 1 cut(s) | 391 |
| MluCI | AATT | 2 cut(s) | 83, 412 |
| MnlI | CCTC | 6 cut(s) | 30, 43, 120, 262, 265, 370 |
| MseI | TTAA | 4 cut(s) | 111, 222, 234, 284 |
| MslI | CAYNNNNRTG | 2 cut(s) | 63, 264 |
| MspI | CCGG | 2 cut(s) | 139, 166 |
| MspR9I | CCNGG | 1 cut(s) | 139 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 74 |
| NciI | CCSGG | 1 cut(s) | 139 |
| NdeII | GATC | 3 cut(s) | 28, 134, 391 |
| NlaIII | CATG | 1 cut(s) | 361 |
| NmuCI | GTSAC | 2 cut(s) | 52, 161 |
| NsbI | TGCGCA | 1 cut(s) | 69 |
| PceI | AGGCCT | 1 cut(s) | 431 |
| PfeI | GAWTC | 3 cut(s) | 94, 142, 214 |
| PfoI | TCCNGGA | 1 cut(s) | 137 |
| PkrI | GCNGC | 1 cut(s) | 209 |
| PspEI | GGTNACC | 1 cut(s) | 161 |
| PspPI | GGNCC | 1 cut(s) | 252 |
| PstI | CTGCAG | 1 cut(s) | 212 |
| PsuI | RGATCY | 1 cut(s) | 391 |
| RseI | CAYNNNNRTG | 2 cut(s) | 63, 264 |
| SaqAI | TTAA | 4 cut(s) | 111, 222, 234, 284 |
| SatI | GCNGC | 1 cut(s) | 208 |
| Sau3AI | GATC | 3 cut(s) | 28, 134, 391 |
| Sau96I | GGNCC | 1 cut(s) | 252 |
| ScrFI | CCNGG | 1 cut(s) | 139 |
| SetI | ASST | 7 cut(s) | 9, 54, 102, 257, 273, 367, 403 |
| SfaNI | GCATC | 1 cut(s) | 55 |
| SfcI | CTRYAG | 1 cut(s) | 208 |
| SinI | GGWCC | 1 cut(s) | 252 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 63, 264 |
| Sse9I | AATT | 2 cut(s) | 83, 412 |
| SseBI | AGGCCT | 1 cut(s) | 431 |
| SspI | AATATT | 1 cut(s) | 280 |
| SspMI | CTAG | 1 cut(s) | 338 |
| StuI | AGGCCT | 1 cut(s) | 431 |
| StyD4I | CCNGG | 1 cut(s) | 137 |
| TaaI | ACNGT | 1 cut(s) | 322 |
| TaqI | TCGA | 1 cut(s) | 217 |
| TasI | AATT | 2 cut(s) | 83, 412 |
| TfiI | GAWTC | 3 cut(s) | 94, 142, 214 |
| Tru1I | TTAA | 4 cut(s) | 111, 222, 234, 284 |
| Tru9I | TTAA | 4 cut(s) | 111, 222, 234, 284 |
| TseFI | GTSAC | 2 cut(s) | 52, 161 |
| TseI | GCWGC | 1 cut(s) | 207 |
| Tsp45I | GTSAC | 2 cut(s) | 52, 161 |
| TspDTI | ATGAA | 5 cut(s) | 17, 129, 173, 312, 398 |
| TspGWI | ACGGA | 1 cut(s) | 299 |
| VpaK11BI | GGWCC | 1 cut(s) | 252 |
| XbaI | TCTAGA | 1 cut(s) | 337 |
| XspI | CTAG | 1 cut(s) | 338 |