ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 789 |
| AciI | CCGC | 4 cut(s) | 345, 650, 707, 789 |
| AclWI | GGATC | 2 cut(s) | 70, 809 |
| AcsI | RAATTY | 2 cut(s) | 199, 367 |
| AfaI | GTAC | 2 cut(s) | 237, 637 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 351, 405, 574, 713, 1000 |
| AgeI | ACCGGT | 1 cut(s) | 238 |
| AgsI | TTSAA | 4 cut(s) | 204, 264, 427, 743 |
| AjnI | CCWGG | 2 cut(s) | 50, 404 |
| AluBI | AGCT | 5 cut(s) | 62, 594, 610, 962, 1033 |
| AluI | AGCT | 5 cut(s) | 62, 594, 610, 962, 1033 |
| Alw21I | GWGCWC | 1 cut(s) | 301 |
| Alw26I | GTCTC | 2 cut(s) | 107, 1088 |
| AlwI | GGATC | 2 cut(s) | 70, 809 |
| AoxI | GGCC | 1 cut(s) | 182 |
| ApeKI | GCWGC | 1 cut(s) | 959 |
| ApoI | RAATTY | 2 cut(s) | 199, 367 |
| AsiGI | ACCGGT | 1 cut(s) | 238 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 620 |
| AspLEI | GCGC | 1 cut(s) | 378 |
| AsuC2I | CCSGG | 1 cut(s) | 994 |
| AsuHPI | GGTGA | 2 cut(s) | 253, 1017 |
| Bbv12I | GWGCWC | 1 cut(s) | 301 |
| BbvI | GCAGC | 1 cut(s) | 971 |
| BccI | CCATC | 2 cut(s) | 502, 634 |
| BceAI | ACGGC | 1 cut(s) | 934 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 836, 870 |
| BciT130I | CCWGG | 2 cut(s) | 52, 406 |
| BclI | TGATCA | 2 cut(s) | 664, 780 |
| BcnI | CCSGG | 1 cut(s) | 994 |
| BcoDI | GTCTC | 2 cut(s) | 107, 1088 |
| BfaI | CTAG | 1 cut(s) | 1088 |
| BisI | GCNGC | 2 cut(s) | 650, 960 |
| BlsI | GCNGC | 2 cut(s) | 651, 961 |
| Bme1390I | CCNGG | 3 cut(s) | 52, 406, 994 |
| BmrFI | CCNGG | 3 cut(s) | 52, 406, 994 |
| BmrI | ACTGGG | 1 cut(s) | 723 |
| BmsI | GCATC | 4 cut(s) | 363, 364, 395, 474 |
| BmuI | ACTGGG | 1 cut(s) | 723 |
| BpmI | CTGGAG | 1 cut(s) | 34 |
| Bpu10I | CCTNAGC | 1 cut(s) | 611 |
| BpuMI | CCSGG | 1 cut(s) | 994 |
| BsaAI | YACGTR | 1 cut(s) | 635 |
| BsaBI | GATNNNNATC | 1 cut(s) | 354 |
| BsaJI | CCNNGG | 1 cut(s) | 404 |
| BsaWI | WCCGGW | 1 cut(s) | 238 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 351, 405, 574, 713, 1000 |
| Bse118I | RCCGGY | 1 cut(s) | 238 |
| Bse1I | ACTGG | 2 cut(s) | 141, 718 |
| Bse3DI | GCAATG | 2 cut(s) | 510, 983 |
| Bse8I | GATNNNNATC | 1 cut(s) | 354 |
| BseBI | CCWGG | 2 cut(s) | 52, 406 |
| BseDI | CCNNGG | 1 cut(s) | 404 |
| BseGI | GGATG | 2 cut(s) | 231, 937 |
| BseJI | GATNNNNATC | 1 cut(s) | 354 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 351, 405, 574, 713, 1000 |
| BseMI | GCAATG | 2 cut(s) | 510, 983 |
| BseMII | CTCAG | 4 cut(s) | 353, 459, 798, 963 |
| BseNI | ACTGG | 2 cut(s) | 141, 718 |
| BseRI | GAGGAG | 1 cut(s) | 309 |
| BseXI | GCAGC | 1 cut(s) | 971 |
| BsgI | GTGCAG | 1 cut(s) | 500 |
| Bsh1236I | CGCG | 1 cut(s) | 789 |
| BshFI | GGCC | 1 cut(s) | 184 |
| BshTI | ACCGGT | 1 cut(s) | 238 |
| BsiHKAI | GWGCWC | 1 cut(s) | 301 |
| BsiSI | CCGG | 3 cut(s) | 79, 239, 994 |
| BslFI | GGGAC | 1 cut(s) | 449 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 351, 405, 574, 713, 1000 |
| BsmAI | GTCTC | 2 cut(s) | 107, 1088 |
| BsmFI | GGGAC | 1 cut(s) | 449 |
| BsnI | GGCC | 1 cut(s) | 184 |
| Bsp1286I | GDGCHC | 1 cut(s) | 301 |
| Bsp143I | GATC | 6 cut(s) | 66, 75, 586, 664, 780, 814 |
| BspACI | CCGC | 4 cut(s) | 345, 650, 707, 789 |
| BspANI | GGCC | 1 cut(s) | 184 |
| BspCNI | CTCAG | 4 cut(s) | 352, 458, 799, 964 |
| BspFNI | CGCG | 1 cut(s) | 789 |
| BspPI | GGATC | 2 cut(s) | 70, 809 |
| BsrDI | GCAATG | 2 cut(s) | 510, 983 |
| BsrFI | RCCGGY | 1 cut(s) | 238 |
| BsrI | ACTGG | 2 cut(s) | 141, 718 |
| BssAI | RCCGGY | 1 cut(s) | 238 |
| BssECI | CCNNGG | 1 cut(s) | 404 |
| BssMI | GATC | 6 cut(s) | 66, 75, 586, 664, 780, 814 |
| Bst2UI | CCWGG | 2 cut(s) | 52, 406 |
| Bst4CI | ACNGT | 2 cut(s) | 173, 671 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 985 |
| BstBAI | YACGTR | 1 cut(s) | 635 |
| BstC8I | GCNNGC | 1 cut(s) | 990 |
| BstDEI | CTNAG | 5 cut(s) | 339, 445, 611, 807, 972 |
| BstF5I | GGATG | 2 cut(s) | 231, 937 |
| BstFNI | CGCG | 1 cut(s) | 789 |
| BstHHI | GCGC | 1 cut(s) | 378 |
| BstKTI | GATC | 6 cut(s) | 69, 78, 589, 667, 783, 817 |
| BstMAI | GTCTC | 2 cut(s) | 107, 1088 |
| BstMBI | GATC | 6 cut(s) | 66, 75, 586, 664, 780, 814 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 344, 715, 968, 985 |
| BstNI | CCWGG | 2 cut(s) | 52, 406 |
| BstNSI | RCATGY | 4 cut(s) | 272, 324, 479, 992 |
| BstSCI | CCNGG | 3 cut(s) | 50, 404, 992 |
| BstUI | CGCG | 1 cut(s) | 789 |
| BstV1I | GCAGC | 1 cut(s) | 971 |
| BstX2I | RGATCY | 1 cut(s) | 814 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 309 |
| BstYI | RGATCY | 1 cut(s) | 814 |
| BsuRI | GGCC | 1 cut(s) | 184 |
| BtsCI | GGATG | 2 cut(s) | 231, 937 |
| BtsI | GCAGTG | 1 cut(s) | 921 |
| BtsIMutI | CAGTG | 2 cut(s) | 783, 921 |
| Cac8I | GCNNGC | 1 cut(s) | 990 |
| CfoI | GCGC | 1 cut(s) | 378 |
| Cfr10I | RCCGGY | 1 cut(s) | 238 |
| Csp6I | GTAC | 2 cut(s) | 236, 636 |
| CspAI | ACCGGT | 1 cut(s) | 238 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 192, 227 |
| CviAII | CATG | 6 cut(s) | 269, 321, 363, 476, 555, 989 |
| CviQI | GTAC | 2 cut(s) | 236, 636 |
| DdeI | CTNAG | 5 cut(s) | 339, 445, 611, 807, 972 |
| DpnI | GATC | 6 cut(s) | 68, 77, 588, 666, 782, 816 |
| DpnII | GATC | 6 cut(s) | 66, 75, 586, 664, 780, 814 |
| EcoRI | GAATTC | 1 cut(s) | 199 |
| EcoRII | CCWGG | 2 cut(s) | 50, 404 |
| EcoT22I | ATGCAT | 1 cut(s) | 326 |
| FaeI | CATG | 6 cut(s) | 272, 324, 366, 479, 558, 992 |
| FaqI | GGGAC | 1 cut(s) | 449 |
| FatI | CATG | 6 cut(s) | 268, 320, 362, 475, 554, 988 |
| FbaI | TGATCA | 2 cut(s) | 664, 780 |
| Fnu4HI | GCNGC | 2 cut(s) | 650, 960 |
| FokI | GGATG | 2 cut(s) | 238, 944 |
| Fsp4HI | GCNGC | 2 cut(s) | 650, 960 |
| FspBI | CTAG | 1 cut(s) | 1088 |
| GlaI | GCGC | 1 cut(s) | 377 |
| GluI | GCNGC | 2 cut(s) | 650, 960 |
| GsuI | CTGGAG | 1 cut(s) | 34 |
| HaeIII | GGCC | 1 cut(s) | 184 |
| HapII | CCGG | 3 cut(s) | 79, 239, 994 |
| HhaI | GCGC | 1 cut(s) | 378 |
| Hin1II | CATG | 6 cut(s) | 272, 324, 366, 479, 558, 992 |
| Hin6I | GCGC | 1 cut(s) | 376 |
| HinP1I | GCGC | 1 cut(s) | 376 |
| HincII | GTYRAC | 3 cut(s) | 274, 439, 1011 |
| HindII | GTYRAC | 3 cut(s) | 274, 439, 1011 |
| HinfI | GANTC | 8 cut(s) | 97, 115, 150, 462, 616, 773, 823, 1064 |
| HpaI | GTTAAC | 1 cut(s) | 1011 |
| HpaII | CCGG | 3 cut(s) | 79, 239, 994 |
| HphI | GGTGA | 2 cut(s) | 253, 1017 |
| Hpy166II | GTNNAC | 4 cut(s) | 274, 439, 860, 1011 |
| Hpy188III | TCNNGA | 4 cut(s) | 764, 857, 904, 1001 |
| Hpy8I | GTNNAC | 4 cut(s) | 274, 439, 860, 1011 |
| Hpy99I | CGWCG | 1 cut(s) | 60 |
| HpyAV | CCTTC | 3 cut(s) | 465, 568, 904 |
| HpyCH4III | ACNGT | 2 cut(s) | 173, 671 |
| HpyCH4IV | ACGT | 3 cut(s) | 276, 634, 838 |
| HpyCH4V | TGCA | 4 cut(s) | 324, 481, 487, 988 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 344, 715, 968, 985 |
| HpyF3I | CTNAG | 5 cut(s) | 339, 445, 611, 807, 972 |
| HpySE526I | ACGT | 3 cut(s) | 276, 634, 838 |
| Hsp92II | CATG | 6 cut(s) | 272, 324, 366, 479, 558, 992 |
| HspAI | GCGC | 1 cut(s) | 376 |
| Ksp22I | TGATCA | 2 cut(s) | 664, 780 |
| KspAI | GTTAAC | 1 cut(s) | 1011 |
| Kzo9I | GATC | 6 cut(s) | 66, 75, 586, 664, 780, 814 |
| LmnI | GCTCC | 3 cut(s) | 296, 591, 607 |
| Lsp1109I | GCAGC | 1 cut(s) | 971 |
| LweI | GCATC | 4 cut(s) | 363, 364, 395, 474 |
| MaeI | CTAG | 1 cut(s) | 1088 |
| MaeII | ACGT | 3 cut(s) | 276, 634, 838 |
| MaeIII | GTNAC | 2 cut(s) | 936, 1023 |
| MalI | GATC | 6 cut(s) | 68, 77, 588, 666, 782, 816 |
| MboI | GATC | 6 cut(s) | 66, 75, 586, 664, 780, 814 |
| MboII | GAAGA | 2 cut(s) | 252, 621 |
| MfeI | CAATTG | 1 cut(s) | 380 |
| MflI | RGATCY | 1 cut(s) | 814 |
| MhlI | GDGCHC | 1 cut(s) | 301 |
| MluCI | AATT | 7 cut(s) | 25, 199, 253, 367, 380, 432, 1004 |
| MlyI | GAGTC | 4 cut(s) | 109, 159, 471, 832 |
| Mph1103I | ATGCAT | 1 cut(s) | 326 |
| MroXI | GAANNNNTTC | 1 cut(s) | 620 |
| MseI | TTAA | 5 cut(s) | 317, 684, 843, 954, 1010 |
| MspA1I | CMGCKG | 2 cut(s) | 347, 962 |
| MspI | CCGG | 3 cut(s) | 79, 239, 994 |
| MspR9I | CCNGG | 3 cut(s) | 52, 406, 994 |
| MunI | CAATTG | 1 cut(s) | 380 |
| MvaI | CCWGG | 2 cut(s) | 52, 406 |
| MvnI | CGCG | 1 cut(s) | 789 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 344, 715, 968, 985 |
| NciI | CCSGG | 1 cut(s) | 994 |
| NdeII | GATC | 6 cut(s) | 66, 75, 586, 664, 780, 814 |
| NlaIII | CATG | 6 cut(s) | 272, 324, 366, 479, 558, 992 |
| NmuCI | GTSAC | 1 cut(s) | 1023 |
| NsiI | ATGCAT | 1 cut(s) | 326 |
| NspI | RCATGY | 4 cut(s) | 272, 324, 479, 992 |
| PaeI | GCATGC | 1 cut(s) | 992 |
| PdmI | GAANNNNTTC | 1 cut(s) | 620 |
| PfeI | GAWTC | 4 cut(s) | 97, 616, 773, 1064 |
| PinAI | ACCGGT | 1 cut(s) | 238 |
| PkrI | GCNGC | 2 cut(s) | 651, 961 |
| PleI | GAGTC | 4 cut(s) | 109, 158, 470, 831 |
| PpsI | GAGTC | 4 cut(s) | 109, 158, 470, 831 |
| Ppu21I | YACGTR | 1 cut(s) | 635 |
| Psp6I | CCWGG | 2 cut(s) | 50, 404 |
| PspGI | CCWGG | 2 cut(s) | 50, 404 |
| PsuI | RGATCY | 1 cut(s) | 814 |
| PvuII | CAGCTG | 1 cut(s) | 962 |
| RsaI | GTAC | 2 cut(s) | 237, 637 |
| RsaNI | GTAC | 2 cut(s) | 236, 636 |
| SaqAI | TTAA | 5 cut(s) | 317, 684, 843, 954, 1010 |
| SatI | GCNGC | 2 cut(s) | 650, 960 |
| Sau3AI | GATC | 6 cut(s) | 66, 75, 586, 664, 780, 814 |
| SchI | GAGTC | 4 cut(s) | 109, 159, 471, 832 |
| ScrFI | CCNGG | 3 cut(s) | 52, 406, 994 |
| SduI | GDGCHC | 1 cut(s) | 301 |
| SfaNI | GCATC | 4 cut(s) | 363, 364, 395, 474 |
| SphI | GCATGC | 1 cut(s) | 992 |
| Sse9I | AATT | 7 cut(s) | 25, 199, 253, 367, 380, 432, 1004 |
| SsiI | CCGC | 4 cut(s) | 345, 650, 707, 789 |
| SspI | AATATT | 1 cut(s) | 749 |
| SspMI | CTAG | 1 cut(s) | 1088 |
| StyD4I | CCNGG | 3 cut(s) | 50, 404, 992 |
| TaaI | ACNGT | 2 cut(s) | 173, 671 |
| TaiI | ACGT | 3 cut(s) | 279, 637, 841 |
| TaqI | TCGA | 2 cut(s) | 69, 469 |
| TasI | AATT | 7 cut(s) | 25, 199, 253, 367, 380, 432, 1004 |
| TauI | GCSGC | 1 cut(s) | 652 |
| TfiI | GAWTC | 4 cut(s) | 97, 616, 773, 1064 |
| Tru1I | TTAA | 5 cut(s) | 317, 684, 843, 954, 1010 |
| Tru9I | TTAA | 5 cut(s) | 317, 684, 843, 954, 1010 |
| TscAI | CASTG | 2 cut(s) | 783, 921 |
| TseFI | GTSAC | 1 cut(s) | 1023 |
| TseI | GCWGC | 1 cut(s) | 959 |
| Tsp45I | GTSAC | 1 cut(s) | 1023 |
| TspDTI | ATGAA | 5 cut(s) | 242, 321, 444, 725, 923 |
| TspGWI | ACGGA | 1 cut(s) | 485 |
| TspRI | CASTG | 2 cut(s) | 783, 921 |
| XapI | RAATTY | 2 cut(s) | 199, 367 |
| XceI | RCATGY | 4 cut(s) | 272, 324, 479, 992 |
| XmnI | GAANNNNTTC | 1 cut(s) | 620 |
| XspI | CTAG | 1 cut(s) | 1088 |
| Zsp2I | ATGCAT | 1 cut(s) | 326 |