ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 981 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 175 |
| AccI | GTMKAC | 2 cut(s) | 548, 1310 |
| AccII | CGCG | 1 cut(s) | 612 |
| AccIII | TCCGGA | 1 cut(s) | 1352 |
| AciI | CCGC | 6 cut(s) | 10, 383, 386, 414, 456, 586 |
| AclWI | GGATC | 1 cut(s) | 1032 |
| AcsI | RAATTY | 1 cut(s) | 1323 |
| AcuI | CTGAAG | 1 cut(s) | 825 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 175, 1352 |
| AgsI | TTSAA | 5 cut(s) | 424, 740, 1057, 1135, 1255 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1361 |
| AjnI | CCWGG | 1 cut(s) | 20 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 343, 375 |
| AluBI | AGCT | 5 cut(s) | 488, 911, 1079, 1151, 1238 |
| AluI | AGCT | 5 cut(s) | 488, 911, 1079, 1151, 1238 |
| Alw26I | GTCTC | 2 cut(s) | 107, 1369 |
| AlwI | GGATC | 1 cut(s) | 1032 |
| Ama87I | CYCGRG | 3 cut(s) | 342, 649, 1346 |
| Aor13HI | TCCGGA | 1 cut(s) | 1352 |
| AoxI | GGCC | 2 cut(s) | 498, 1342 |
| ApeKI | GCWGC | 6 cut(s) | 45, 406, 540, 871, 956, 1235 |
| ApoI | RAATTY | 1 cut(s) | 1323 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 349, 381, 814, 846 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 253 |
| AspLEI | GCGC | 1 cut(s) | 612 |
| AspS9I | GGNCC | 3 cut(s) | 811, 1343, 1350 |
| AsuC2I | CCSGG | 5 cut(s) | 343, 344, 494, 1347, 1348 |
| AsuHPI | GGTGA | 3 cut(s) | 288, 428, 638 |
| AvaI | CYCGRG | 3 cut(s) | 342, 649, 1346 |
| AvaII | GGWCC | 2 cut(s) | 811, 1350 |
| BaeGI | GKGCMC | 1 cut(s) | 754 |
| BbvI | GCAGC | 6 cut(s) | 32, 393, 552, 883, 943, 1247 |
| BccI | CCATC | 3 cut(s) | 783, 1139, 1272 |
| BceAI | ACGGC | 4 cut(s) | 278, 553, 770, 1373 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 695, 713, 729, 747 |
| BciT130I | CCWGG | 1 cut(s) | 22 |
| BciVI | GTATCC | 1 cut(s) | 192 |
| BclI | TGATCA | 2 cut(s) | 559, 661 |
| BcnI | CCSGG | 5 cut(s) | 343, 344, 494, 1347, 1348 |
| BcoDI | GTCTC | 2 cut(s) | 107, 1369 |
| BfuAI | ACCTGC | 1 cut(s) | 981 |
| BfuI | GTATCC | 1 cut(s) | 192 |
| BisI | GCNGC | 7 cut(s) | 46, 384, 407, 541, 872, 957, 1236 |
| BlsI | GCNGC | 7 cut(s) | 47, 385, 408, 542, 873, 958, 1237 |
| Bme1390I | CCNGG | 6 cut(s) | 22, 343, 344, 494, 1347, 1348 |
| Bme18I | GGWCC | 2 cut(s) | 811, 1350 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1361 |
| BmeT110I | CYCGRG | 3 cut(s) | 342, 649, 1346 |
| BmgT120I | GGNCC | 3 cut(s) | 811, 1343, 1350 |
| BmiI | GGNNCC | 5 cut(s) | 812, 813, 1164, 1345, 1351 |
| BmrFI | CCNGG | 6 cut(s) | 22, 343, 344, 494, 1347, 1348 |
| BmsI | GCATC | 4 cut(s) | 471, 894, 943, 1106 |
| BoxI | GACNNNNGTC | 2 cut(s) | 588, 1334 |
| BpuMI | CCSGG | 5 cut(s) | 343, 344, 494, 1347, 1348 |
| Bsa29I | ATCGAT | 1 cut(s) | 69 |
| BsaJI | CCNNGG | 5 cut(s) | 342, 401, 1339, 1345, 1346 |
| BsaWI | WCCGGW | 1 cut(s) | 1352 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1140, 1170 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 175, 1352 |
| Bse1I | ACTGG | 2 cut(s) | 169, 236 |
| Bse3DI | GCAATG | 2 cut(s) | 36, 448 |
| BseAI | TCCGGA | 1 cut(s) | 1352 |
| BseBI | CCWGG | 1 cut(s) | 22 |
| BseCI | ATCGAT | 1 cut(s) | 69 |
| BseDI | CCNNGG | 5 cut(s) | 342, 401, 1339, 1345, 1346 |
| BseGI | GGATG | 3 cut(s) | 794, 934, 1264 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 175, 1352 |
| BseMI | GCAATG | 2 cut(s) | 36, 448 |
| BseMII | CTCAG | 1 cut(s) | 1205 |
| BseNI | ACTGG | 2 cut(s) | 169, 236 |
| BseRI | GAGGAG | 1 cut(s) | 1028 |
| BseSI | GKGCMC | 1 cut(s) | 754 |
| BseXI | GCAGC | 6 cut(s) | 32, 393, 552, 883, 943, 1247 |
| Bsh1236I | CGCG | 1 cut(s) | 612 |
| BshFI | GGCC | 2 cut(s) | 500, 1344 |
| BshVI | ATCGAT | 1 cut(s) | 69 |
| BsiHKCI | CYCGRG | 3 cut(s) | 342, 649, 1346 |
| BsiSI | CCGG | 4 cut(s) | 343, 493, 1347, 1353 |
| BslFI | GGGAC | 2 cut(s) | 359, 824 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 175, 1352 |
| BsmAI | GTCTC | 2 cut(s) | 107, 1369 |
| BsmFI | GGGAC | 2 cut(s) | 359, 824 |
| BsmI | GAATGC | 4 cut(s) | 12, 96, 625, 1144 |
| BsnI | GGCC | 2 cut(s) | 500, 1344 |
| BsoBI | CYCGRG | 3 cut(s) | 342, 649, 1346 |
| Bsp1286I | GDGCHC | 1 cut(s) | 754 |
| Bsp13I | TCCGGA | 1 cut(s) | 1352 |
| Bsp143I | GATC | 6 cut(s) | 66, 390, 559, 661, 1037, 1122 |
| BspACI | CCGC | 6 cut(s) | 10, 383, 386, 414, 456, 586 |
| BspANI | GGCC | 2 cut(s) | 500, 1344 |
| BspCNI | CTCAG | 1 cut(s) | 1204 |
| BspDI | ATCGAT | 1 cut(s) | 69 |
| BspEI | TCCGGA | 1 cut(s) | 1352 |
| BspFNI | CGCG | 1 cut(s) | 612 |
| BspLI | GGNNCC | 5 cut(s) | 812, 813, 1164, 1345, 1351 |
| BspMI | ACCTGC | 1 cut(s) | 981 |
| BspPI | GGATC | 1 cut(s) | 1032 |
| BspQI | GCTCTTC | 1 cut(s) | 1087 |
| BsrDI | GCAATG | 2 cut(s) | 36, 448 |
| BsrI | ACTGG | 2 cut(s) | 169, 236 |
| BssECI | CCNNGG | 5 cut(s) | 342, 401, 1339, 1345, 1346 |
| BssMI | GATC | 6 cut(s) | 66, 390, 559, 661, 1037, 1122 |
| BssNAI | GTATAC | 2 cut(s) | 549, 1311 |
| BssT1I | CCWWGG | 1 cut(s) | 1339 |
| Bst1107I | GTATAC | 2 cut(s) | 549, 1311 |
| Bst2UI | CCWGG | 1 cut(s) | 22 |
| Bst4CI | ACNGT | 6 cut(s) | 216, 280, 402, 579, 744, 1261 |
| Bst6I | CTCTTC | 3 cut(s) | 107, 713, 1087 |
| BstC8I | GCNNGC | 3 cut(s) | 43, 486, 909 |
| BstDEI | CTNAG | 1 cut(s) | 1191 |
| BstDSI | CCRYGG | 1 cut(s) | 401 |
| BstF5I | GGATG | 3 cut(s) | 794, 934, 1264 |
| BstFNI | CGCG | 1 cut(s) | 612 |
| BstHHI | GCGC | 1 cut(s) | 612 |
| BstKTI | GATC | 6 cut(s) | 69, 393, 562, 664, 1040, 1125 |
| BstMAI | GTCTC | 2 cut(s) | 107, 1369 |
| BstMBI | GATC | 6 cut(s) | 66, 390, 559, 661, 1037, 1122 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 42, 54, 362, 917, 1148 |
| BstNI | CCWGG | 1 cut(s) | 22 |
| BstNSI | RCATGY | 2 cut(s) | 269, 1364 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 588, 1334 |
| BstSCI | CCNGG | 6 cut(s) | 20, 341, 342, 492, 1345, 1346 |
| BstSLI | GKGCMC | 1 cut(s) | 754 |
| BstUI | CGCG | 1 cut(s) | 612 |
| BstV1I | GCAGC | 6 cut(s) | 32, 393, 552, 883, 943, 1247 |
| BstZ17I | GTATAC | 2 cut(s) | 549, 1311 |
| Bsu15I | ATCGAT | 1 cut(s) | 69 |
| BsuI | GTATCC | 1 cut(s) | 192 |
| BsuRI | GGCC | 2 cut(s) | 500, 1344 |
| BsuTUI | ATCGAT | 1 cut(s) | 69 |
| BtgI | CCRYGG | 1 cut(s) | 401 |
| BtgZI | GCGATG | 1 cut(s) | 974 |
| BtsCI | GGATG | 3 cut(s) | 794, 934, 1264 |
| BtsIMutI | CAGTG | 2 cut(s) | 176, 212 |
| BveI | ACCTGC | 1 cut(s) | 981 |
| Cac8I | GCNNGC | 3 cut(s) | 43, 486, 909 |
| CfoI | GCGC | 1 cut(s) | 612 |
| Cfr13I | GGNCC | 3 cut(s) | 811, 1343, 1350 |
| Cfr9I | CCCGGG | 2 cut(s) | 342, 1346 |
| ClaI | ATCGAT | 1 cut(s) | 69 |
| CseI | GACGC | 1 cut(s) | 63 |
| CviAII | CATG | 4 cut(s) | 266, 552, 867, 1361 |
| DdeI | CTNAG | 1 cut(s) | 1191 |
| DpnI | GATC | 6 cut(s) | 68, 392, 561, 663, 1039, 1124 |
| DpnII | GATC | 6 cut(s) | 66, 390, 559, 661, 1037, 1122 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1361 |
| Eam1104I | CTCTTC | 3 cut(s) | 107, 713, 1087 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1361 |
| EarI | CTCTTC | 3 cut(s) | 107, 713, 1087 |
| EciI | GGCGGA | 2 cut(s) | 401, 471 |
| Eco130I | CCWWGG | 1 cut(s) | 1339 |
| Eco47I | GGWCC | 2 cut(s) | 811, 1350 |
| Eco57I | CTGAAG | 1 cut(s) | 825 |
| Eco88I | CYCGRG | 3 cut(s) | 342, 649, 1346 |
| EcoO109I | RGGNCCY | 2 cut(s) | 811, 1343 |
| EcoRII | CCWGG | 1 cut(s) | 20 |
| EcoT14I | CCWWGG | 1 cut(s) | 1339 |
| ErhI | CCWWGG | 1 cut(s) | 1339 |
| FaeI | CATG | 4 cut(s) | 269, 555, 870, 1364 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 343, 375 |
| FaqI | GGGAC | 2 cut(s) | 359, 824 |
| FatI | CATG | 4 cut(s) | 265, 551, 866, 1360 |
| FbaI | TGATCA | 2 cut(s) | 559, 661 |
| FblI | GTMKAC | 2 cut(s) | 548, 1310 |
| Fnu4HI | GCNGC | 7 cut(s) | 46, 384, 407, 541, 872, 957, 1236 |
| FokI | GGATG | 3 cut(s) | 801, 941, 1251 |
| Fsp4HI | GCNGC | 7 cut(s) | 46, 384, 407, 541, 872, 957, 1236 |
| GlaI | GCGC | 1 cut(s) | 611 |
| GluI | GCNGC | 7 cut(s) | 46, 384, 407, 541, 872, 957, 1236 |
| HaeIII | GGCC | 2 cut(s) | 500, 1344 |
| HapII | CCGG | 4 cut(s) | 343, 493, 1347, 1353 |
| HgaI | GACGC | 1 cut(s) | 63 |
| HhaI | GCGC | 1 cut(s) | 612 |
| Hin1II | CATG | 4 cut(s) | 269, 555, 870, 1364 |
| Hin6I | GCGC | 1 cut(s) | 610 |
| HinP1I | GCGC | 1 cut(s) | 610 |
| HincII | GTYRAC | 3 cut(s) | 241, 1008, 1034 |
| HindII | GTYRAC | 3 cut(s) | 241, 1008, 1034 |
| HindIII | AAGCTT | 1 cut(s) | 486 |
| HinfI | GANTC | 6 cut(s) | 115, 150, 695, 1030, 1189, 1288 |
| HpaII | CCGG | 4 cut(s) | 343, 493, 1347, 1353 |
| HphI | GGTGA | 3 cut(s) | 288, 428, 638 |
| Hpy166II | GTNNAC | 6 cut(s) | 241, 549, 671, 1008, 1034, 1311 |
| Hpy188III | TCNNGA | 4 cut(s) | 676, 841, 1126, 1353 |
| Hpy8I | GTNNAC | 6 cut(s) | 241, 549, 671, 1008, 1034, 1311 |
| Hpy99I | CGWCG | 1 cut(s) | 57 |
| HpyAV | CCTTC | 5 cut(s) | 345, 565, 653, 800, 1214 |
| HpyCH4III | ACNGT | 6 cut(s) | 216, 280, 402, 579, 744, 1261 |
| HpyCH4IV | ACGT | 2 cut(s) | 243, 1307 |
| HpyCH4V | TGCA | 6 cut(s) | 30, 41, 484, 701, 820, 1142 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 42, 54, 362, 917, 1148 |
| HpyF3I | CTNAG | 1 cut(s) | 1191 |
| HpySE526I | ACGT | 2 cut(s) | 243, 1307 |
| Hsp92II | CATG | 4 cut(s) | 269, 555, 870, 1364 |
| HspAI | GCGC | 1 cut(s) | 610 |
| KflI | GGGWCCC | 1 cut(s) | 811 |
| Kpn2I | TCCGGA | 1 cut(s) | 1352 |
| Ksp22I | TGATCA | 2 cut(s) | 559, 661 |
| Kzo9I | GATC | 6 cut(s) | 66, 390, 559, 661, 1037, 1122 |
| LguI | GCTCTTC | 1 cut(s) | 1087 |
| LmnI | GCTCC | 1 cut(s) | 1148 |
| Lsp1109I | GCAGC | 6 cut(s) | 32, 393, 552, 883, 943, 1247 |
| LweI | GCATC | 4 cut(s) | 471, 894, 943, 1106 |
| MaeII | ACGT | 2 cut(s) | 243, 1307 |
| MaeIII | GTNAC | 6 cut(s) | 274, 993, 1156, 1186, 1202, 1273 |
| MalI | GATC | 6 cut(s) | 68, 392, 561, 663, 1039, 1124 |
| MboI | GATC | 6 cut(s) | 66, 390, 559, 661, 1037, 1122 |
| MboII | GAAGA | 5 cut(s) | 94, 730, 1104, 1147, 1364 |
| MfeI | CAATTG | 1 cut(s) | 134 |
| MhlI | GDGCHC | 1 cut(s) | 754 |
| MluCI | AATT | 6 cut(s) | 25, 134, 980, 1244, 1295, 1323 |
| MlyI | GAGTC | 4 cut(s) | 109, 689, 1039, 1183 |
| MmeI | TCCRAC | 1 cut(s) | 695 |
| MroI | TCCGGA | 1 cut(s) | 1352 |
| MroXI | GAANNNNTTC | 1 cut(s) | 253 |
| MseI | TTAA | 3 cut(s) | 74, 969, 983 |
| MslI | CAYNNNNRTG | 2 cut(s) | 217, 270 |
| MspI | CCGG | 4 cut(s) | 343, 493, 1347, 1353 |
| MspR9I | CCNGG | 6 cut(s) | 22, 343, 344, 494, 1347, 1348 |
| MunI | CAATTG | 1 cut(s) | 134 |
| Mva1269I | GAATGC | 4 cut(s) | 12, 96, 625, 1144 |
| MvaI | CCWGG | 1 cut(s) | 22 |
| MvnI | CGCG | 1 cut(s) | 612 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 42, 54, 362, 917, 1148 |
| NciI | CCSGG | 5 cut(s) | 343, 344, 494, 1347, 1348 |
| NdeII | GATC | 6 cut(s) | 66, 390, 559, 661, 1037, 1122 |
| NlaIII | CATG | 4 cut(s) | 269, 555, 870, 1364 |
| NlaIV | GGNNCC | 5 cut(s) | 812, 813, 1164, 1345, 1351 |
| NmuCI | GTSAC | 3 cut(s) | 274, 1186, 1202 |
| NspI | RCATGY | 2 cut(s) | 269, 1364 |
| PciSI | GCTCTTC | 1 cut(s) | 1087 |
| PctI | GAATGC | 4 cut(s) | 12, 96, 625, 1144 |
| PdmI | GAANNNNTTC | 1 cut(s) | 253 |
| PfeI | GAWTC | 2 cut(s) | 150, 1288 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 175 |
| PfoI | TCCNGGA | 1 cut(s) | 492 |
| PkrI | GCNGC | 7 cut(s) | 47, 385, 408, 542, 873, 958, 1237 |
| PleI | GAGTC | 4 cut(s) | 109, 689, 1038, 1183 |
| PpsI | GAGTC | 4 cut(s) | 109, 689, 1038, 1183 |
| PpuMI | RGGWCCY | 1 cut(s) | 811 |
| PshAI | GACNNNNGTC | 2 cut(s) | 588, 1334 |
| Psp5II | RGGWCCY | 1 cut(s) | 811 |
| Psp6I | CCWGG | 1 cut(s) | 20 |
| PspGI | CCWGG | 1 cut(s) | 20 |
| PspN4I | GGNNCC | 5 cut(s) | 812, 813, 1164, 1345, 1351 |
| PspPI | GGNCC | 3 cut(s) | 811, 1343, 1350 |
| PspPPI | RGGWCCY | 1 cut(s) | 811 |
| RseI | CAYNNNNRTG | 2 cut(s) | 217, 270 |
| SapI | GCTCTTC | 1 cut(s) | 1087 |
| SaqAI | TTAA | 3 cut(s) | 74, 969, 983 |
| SatI | GCNGC | 7 cut(s) | 46, 384, 407, 541, 872, 957, 1236 |
| Sau3AI | GATC | 6 cut(s) | 66, 390, 559, 661, 1037, 1122 |
| Sau96I | GGNCC | 3 cut(s) | 811, 1343, 1350 |
| SchI | GAGTC | 4 cut(s) | 109, 689, 1039, 1183 |
| ScrFI | CCNGG | 6 cut(s) | 22, 343, 344, 494, 1347, 1348 |
| SduI | GDGCHC | 1 cut(s) | 754 |
| SfaNI | GCATC | 4 cut(s) | 471, 894, 943, 1106 |
| SinI | GGWCC | 2 cut(s) | 811, 1350 |
| SmaI | CCCGGG | 2 cut(s) | 344, 1348 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 217, 270 |
| Sse9I | AATT | 6 cut(s) | 25, 134, 980, 1244, 1295, 1323 |
| SsiI | CCGC | 6 cut(s) | 10, 383, 386, 414, 456, 586 |
| StyD4I | CCNGG | 6 cut(s) | 20, 341, 342, 492, 1345, 1346 |
| StyI | CCWWGG | 1 cut(s) | 1339 |
| TaaI | ACNGT | 6 cut(s) | 216, 280, 402, 579, 744, 1261 |
| TaiI | ACGT | 2 cut(s) | 246, 1310 |
| TaqI | TCGA | 6 cut(s) | 52, 69, 200, 270, 733, 892 |
| TasI | AATT | 6 cut(s) | 25, 134, 980, 1244, 1295, 1323 |
| TauI | GCSGC | 1 cut(s) | 386 |
| TfiI | GAWTC | 2 cut(s) | 150, 1288 |
| Tru1I | TTAA | 3 cut(s) | 74, 969, 983 |
| Tru9I | TTAA | 3 cut(s) | 74, 969, 983 |
| TscAI | CASTG | 2 cut(s) | 176, 219 |
| TseFI | GTSAC | 3 cut(s) | 274, 1186, 1202 |
| TseI | GCWGC | 6 cut(s) | 45, 406, 540, 871, 956, 1235 |
| Tsp45I | GTSAC | 3 cut(s) | 274, 1186, 1202 |
| TspDTI | ATGAA | 6 cut(s) | 318, 945, 977, 1076, 1301, 1335 |
| TspGWI | ACGGA | 4 cut(s) | 914, 1129, 1175, 1232 |
| TspMI | CCCGGG | 2 cut(s) | 342, 1346 |
| TspRI | CASTG | 2 cut(s) | 176, 219 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 175 |
| VpaK11BI | GGWCC | 2 cut(s) | 811, 1350 |
| XapI | RAATTY | 1 cut(s) | 1323 |
| XceI | RCATGY | 2 cut(s) | 269, 1364 |
| XmaI | CCCGGG | 2 cut(s) | 342, 1346 |
| XmiI | GTMKAC | 2 cut(s) | 548, 1310 |
| XmnI | GAANNNNTTC | 1 cut(s) | 253 |