ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 282 |
| Acc36I | ACCTGC | 1 cut(s) | 282 |
| AclWI | GGATC | 1 cut(s) | 106 |
| AcuI | CTGAAG | 1 cut(s) | 346 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 183, 341, 529 |
| AflIII | ACRYGT | 1 cut(s) | 454 |
| AgsI | TTSAA | 2 cut(s) | 55, 125 |
| AluBI | AGCT | 6 cut(s) | 65, 119, 222, 238, 285, 551 |
| AluI | AGCT | 6 cut(s) | 65, 119, 222, 238, 285, 551 |
| Alw21I | GWGCWC | 1 cut(s) | 553 |
| Alw26I | GTCTC | 2 cut(s) | 264, 435 |
| AlwI | GGATC | 1 cut(s) | 106 |
| ApeKI | GCWGC | 1 cut(s) | 14 |
| AsuC2I | CCSGG | 1 cut(s) | 337 |
| AsuHPI | GGTGA | 1 cut(s) | 484 |
| AsuII | TTCGAA | 1 cut(s) | 369 |
| BanII | GRGCYC | 1 cut(s) | 553 |
| BbsI | GAAGAC | 1 cut(s) | 106 |
| Bbv12I | GWGCWC | 1 cut(s) | 553 |
| BbvI | GCAGC | 1 cut(s) | 26 |
| BccI | CCATC | 5 cut(s) | 275, 414, 471, 472, 590 |
| BclI | TGATCA | 1 cut(s) | 408 |
| BcnI | CCSGG | 1 cut(s) | 337 |
| BcoDI | GTCTC | 2 cut(s) | 264, 435 |
| BfaI | CTAG | 3 cut(s) | 96, 308, 557 |
| BfuAI | ACCTGC | 1 cut(s) | 282 |
| BisI | GCNGC | 1 cut(s) | 15 |
| BlsI | GCNGC | 1 cut(s) | 16 |
| Bme1390I | CCNGG | 1 cut(s) | 337 |
| BmrFI | CCNGG | 1 cut(s) | 337 |
| BmsI | GCATC | 2 cut(s) | 438, 574 |
| BoxI | GACNNNNGTC | 1 cut(s) | 297 |
| BpiI | GAAGAC | 1 cut(s) | 106 |
| Bpu14I | TTCGAA | 1 cut(s) | 369 |
| BpuMI | CCSGG | 1 cut(s) | 337 |
| BsaI | GGTCTC | 1 cut(s) | 435 |
| BsaJI | CCNNGG | 2 cut(s) | 32, 335 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 183, 341, 529 |
| Bse1I | ACTGG | 1 cut(s) | 495 |
| BseDI | CCNNGG | 2 cut(s) | 32, 335 |
| BseGI | GGATG | 2 cut(s) | 267, 425 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 183, 341, 529 |
| BseMII | CTCAG | 1 cut(s) | 275 |
| BseNI | ACTGG | 1 cut(s) | 495 |
| BseXI | GCAGC | 1 cut(s) | 26 |
| BsiHKAI | GWGCWC | 1 cut(s) | 553 |
| BsiSI | CCGG | 1 cut(s) | 337 |
| BslFI | GGGAC | 1 cut(s) | 159 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 183, 341, 529 |
| BsmAI | GTCTC | 2 cut(s) | 264, 435 |
| BsmBI | CGTCTC | 1 cut(s) | 264 |
| BsmFI | GGGAC | 1 cut(s) | 159 |
| Bso31I | GGTCTC | 1 cut(s) | 435 |
| Bsp119I | TTCGAA | 1 cut(s) | 369 |
| Bsp1286I | GDGCHC | 1 cut(s) | 553 |
| Bsp143I | GATC | 2 cut(s) | 111, 408 |
| Bsp19I | CCATGG | 1 cut(s) | 32 |
| BspCNI | CTCAG | 1 cut(s) | 274 |
| BspMI | ACCTGC | 1 cut(s) | 282 |
| BspPI | GGATC | 1 cut(s) | 106 |
| BspT104I | TTCGAA | 1 cut(s) | 369 |
| BspTNI | GGTCTC | 1 cut(s) | 435 |
| BsrI | ACTGG | 1 cut(s) | 495 |
| BssECI | CCNNGG | 2 cut(s) | 32, 335 |
| BssMI | GATC | 2 cut(s) | 111, 408 |
| BssT1I | CCWWGG | 1 cut(s) | 32 |
| Bst4CI | ACNGT | 2 cut(s) | 299, 375 |
| BstBI | TTCGAA | 1 cut(s) | 369 |
| BstDEI | CTNAG | 1 cut(s) | 261 |
| BstDSI | CCRYGG | 1 cut(s) | 32 |
| BstF5I | GGATG | 2 cut(s) | 267, 425 |
| BstKTI | GATC | 2 cut(s) | 114, 411 |
| BstMAI | GTCTC | 2 cut(s) | 264, 435 |
| BstMBI | GATC | 2 cut(s) | 111, 408 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 548 |
| BstNSI | RCATGY | 1 cut(s) | 458 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 297 |
| BstSCI | CCNGG | 1 cut(s) | 335 |
| BstV1I | GCAGC | 1 cut(s) | 26 |
| BstV2I | GAAGAC | 1 cut(s) | 106 |
| BstX2I | RGATCY | 1 cut(s) | 111 |
| BstYI | RGATCY | 1 cut(s) | 111 |
| BtgI | CCRYGG | 1 cut(s) | 32 |
| BtsCI | GGATG | 2 cut(s) | 267, 425 |
| BtsI | GCAGTG | 1 cut(s) | 549 |
| BtsIMutI | CAGTG | 1 cut(s) | 549 |
| BveI | ACCTGC | 1 cut(s) | 282 |
| CviAII | CATG | 7 cut(s) | 33, 104, 133, 157, 183, 455, 517 |
| DdeI | CTNAG | 1 cut(s) | 261 |
| DpnI | GATC | 2 cut(s) | 113, 410 |
| DpnII | GATC | 2 cut(s) | 111, 408 |
| Ecl136II | GAGCTC | 1 cut(s) | 551 |
| Eco130I | CCWWGG | 1 cut(s) | 32 |
| Eco24I | GRGCYC | 1 cut(s) | 553 |
| Eco31I | GGTCTC | 1 cut(s) | 435 |
| Eco53kI | GAGCTC | 1 cut(s) | 551 |
| Eco57I | CTGAAG | 1 cut(s) | 346 |
| EcoICRI | GAGCTC | 1 cut(s) | 551 |
| EcoT14I | CCWWGG | 1 cut(s) | 32 |
| EcoT38I | GRGCYC | 1 cut(s) | 553 |
| ErhI | CCWWGG | 1 cut(s) | 32 |
| Esp3I | CGTCTC | 1 cut(s) | 264 |
| FaeI | CATG | 7 cut(s) | 36, 107, 136, 160, 186, 458, 520 |
| FaqI | GGGAC | 1 cut(s) | 159 |
| FatI | CATG | 7 cut(s) | 32, 103, 132, 156, 182, 454, 516 |
| FbaI | TGATCA | 1 cut(s) | 408 |
| Fnu4HI | GCNGC | 1 cut(s) | 15 |
| FokI | GGATG | 2 cut(s) | 254, 432 |
| FriOI | GRGCYC | 1 cut(s) | 553 |
| Fsp4HI | GCNGC | 1 cut(s) | 15 |
| FspBI | CTAG | 3 cut(s) | 96, 308, 557 |
| GluI | GCNGC | 1 cut(s) | 15 |
| HapII | CCGG | 1 cut(s) | 337 |
| Hin1II | CATG | 7 cut(s) | 36, 107, 136, 160, 186, 458, 520 |
| HindIII | AAGCTT | 1 cut(s) | 220 |
| HinfI | GANTC | 1 cut(s) | 366 |
| HpaII | CCGG | 1 cut(s) | 337 |
| HphI | GGTGA | 1 cut(s) | 484 |
| Hpy166II | GTNNAC | 1 cut(s) | 347 |
| Hpy188I | TCNGA | 5 cut(s) | 190, 264, 292, 365, 524 |
| Hpy188III | TCNNGA | 3 cut(s) | 74, 176, 557 |
| Hpy8I | GTNNAC | 1 cut(s) | 347 |
| HpyAV | CCTTC | 2 cut(s) | 370, 431 |
| HpyCH4III | ACNGT | 2 cut(s) | 299, 375 |
| HpyCH4IV | ACGT | 1 cut(s) | 231 |
| HpyCH4V | TGCA | 3 cut(s) | 14, 451, 587 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 548 |
| HpyF3I | CTNAG | 1 cut(s) | 261 |
| HpySE526I | ACGT | 1 cut(s) | 231 |
| Hsp92II | CATG | 7 cut(s) | 36, 107, 136, 160, 186, 458, 520 |
| Ksp22I | TGATCA | 1 cut(s) | 408 |
| Kzo9I | GATC | 2 cut(s) | 111, 408 |
| LmnI | GCTCC | 1 cut(s) | 525 |
| LpnPI | CCDG | 6 cut(s) | 69, 287, 327, 350, 413, 508 |
| Lsp1109I | GCAGC | 1 cut(s) | 26 |
| LweI | GCATC | 2 cut(s) | 438, 574 |
| MaeI | CTAG | 3 cut(s) | 96, 308, 557 |
| MaeII | ACGT | 1 cut(s) | 231 |
| MalI | GATC | 2 cut(s) | 113, 410 |
| MboI | GATC | 2 cut(s) | 111, 408 |
| MboII | GAAGA | 3 cut(s) | 99, 111, 413 |
| MflI | RGATCY | 1 cut(s) | 111 |
| MhlI | GDGCHC | 1 cut(s) | 553 |
| MluCI | AATT | 2 cut(s) | 330, 563 |
| MmeI | TCCRAC | 3 cut(s) | 168, 479, 547 |
| MnlI | CCTC | 5 cut(s) | 236, 265, 312, 410, 531 |
| MseI | TTAA | 1 cut(s) | 471 |
| MspI | CCGG | 1 cut(s) | 337 |
| MspR9I | CCNGG | 1 cut(s) | 337 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 548 |
| NciI | CCSGG | 1 cut(s) | 337 |
| NcoI | CCATGG | 1 cut(s) | 32 |
| NdeII | GATC | 2 cut(s) | 111, 408 |
| NlaIII | CATG | 7 cut(s) | 36, 107, 136, 160, 186, 458, 520 |
| NspI | RCATGY | 1 cut(s) | 458 |
| NspV | TTCGAA | 1 cut(s) | 369 |
| PaqCI | CACCTGC | 1 cut(s) | 282 |
| PciI | ACATGT | 1 cut(s) | 454 |
| PfeI | GAWTC | 1 cut(s) | 366 |
| PkrI | GCNGC | 1 cut(s) | 16 |
| PscI | ACATGT | 1 cut(s) | 454 |
| PshAI | GACNNNNGTC | 1 cut(s) | 297 |
| Psp124BI | GAGCTC | 1 cut(s) | 553 |
| PsuI | RGATCY | 1 cut(s) | 111 |
| SacI | GAGCTC | 1 cut(s) | 553 |
| SaqAI | TTAA | 1 cut(s) | 471 |
| SatI | GCNGC | 1 cut(s) | 15 |
| Sau3AI | GATC | 2 cut(s) | 111, 408 |
| ScrFI | CCNGG | 1 cut(s) | 337 |
| SduI | GDGCHC | 1 cut(s) | 553 |
| SfaNI | GCATC | 2 cut(s) | 438, 574 |
| SfuI | TTCGAA | 1 cut(s) | 369 |
| Sse9I | AATT | 2 cut(s) | 330, 563 |
| SspI | AATATT | 1 cut(s) | 513 |
| SspMI | CTAG | 3 cut(s) | 96, 308, 557 |
| SstI | GAGCTC | 1 cut(s) | 553 |
| StyD4I | CCNGG | 1 cut(s) | 335 |
| StyI | CCWWGG | 1 cut(s) | 32 |
| TaaI | ACNGT | 2 cut(s) | 299, 375 |
| TaiI | ACGT | 1 cut(s) | 234 |
| TaqI | TCGA | 1 cut(s) | 369 |
| TasI | AATT | 2 cut(s) | 330, 563 |
| TfiI | GAWTC | 1 cut(s) | 366 |
| Tru1I | TTAA | 1 cut(s) | 471 |
| Tru9I | TTAA | 1 cut(s) | 471 |
| TscAI | CASTG | 1 cut(s) | 549 |
| TseI | GCWGC | 1 cut(s) | 14 |
| TspDTI | ATGAA | 2 cut(s) | 505, 576 |
| TspGWI | ACGGA | 1 cut(s) | 152 |
| TspRI | CASTG | 1 cut(s) | 549 |
| XbaI | TCTAGA | 1 cut(s) | 556 |
| XceI | RCATGY | 1 cut(s) | 458 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 208 |
| XspI | CTAG | 3 cut(s) | 96, 308, 557 |